Pregenerated sensors for CIR1 (Homo sapiens)
Ensembl gene IDs: ENSG00000138433Ensembl transcript IDs: ENST00000342016.8, ENST00000377973.4, ENST00000472169.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGCCTCCCAGCAGCTGTGATTACAGGCGCTGGCCACAAAACCCGGCTAATTTTTCCACTGTGCCCGGCCTaGGCCATCAGTGGGAACCGA | + |
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Preference number: 4 (lower is better) Translates to: SLPAAVITGAGHKTRLIFPLCPA*AISGNR Trigger: TCGGTTCCCACTGATGGCTCAGGCCGGGCACAGTGG...AAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTAATCACAGCTGCTGGGAGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS-3UTR TCA 90 bp | TACAGGCGCTGGCCACAAAACCCGGCTAATTTTTGTATTTCAGTAGAGACGGGGGCCTCCCAGCAGCTGTaGTTACAGGCGCTGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: YRRWPQNPANFCISVETGASQQL*LQALAT Trigger: TGTGGCCAGCGCCTGTAATCACAGCTGCTGGGAGGC...CCCCGTCTCTACTGAAATACAAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS-3UTR TCA 90 bp | CCTCCCAGCAGCTGTGATTACAGGCGCTGGCCACAAAACCCGGCTAATTTTTGTACTCCTGACCTCAAATaGTCCACCAGCCTTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PPSSCDYRRWPQNPANFCTPDLK*STSLGL Trigger: GAGGCCAAGGCTGGTGGATCATTTGAGGTCAGGAGT...ACAAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTAATCACAGCTGCTGGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS-3UTR TCA 90 bp | AGCCTCCCAGCAGCTGTGATTACAGGCGCTGGCCACAAAACCCGGCTAATTTTTCTCTATCGCCCAGGCTaGAGTGCAATGACACCATCT | + |
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Preference number: 4 (lower is better) Translates to: SLPAAVITGAGHKTRLIFLYRPG*SAMTPS Trigger: AGATGGTGTCATTGCACTTCAGCCTGGGCGATAGAG...AAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTAATCACAGCTGCTGGGAGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS-3UTR GCA 90 bp | AGCCTCCCAGCAGCTGTGATTACAGGCGCTGGCCACAAAACCCGGCTAATTTTTTCGCCCAGGCTGAAGTaGAATGACACCATCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SLPAAVITGAGHKTRLIFSPRLK*NDTISA Trigger: AGCTGAGATGGTGTCATTGCACTTCAGCCTGGGCGA...AAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTAATCACAGCTGCTGGGAGGCT 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS-3UTR GCA 90 bp | TACAGGCGCTGGCCACAAAACCCGGCTAATTTTTGTATTTCAGTAGAGACGGGGACCATCTCAGCTCACTaGAACTTCCACCTCCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: YRRWPQNPANFCISVETGTISAH*NFHLLG Trigger: ACCCAGGAGGTGGAAGTTGCAGTGAGCTGAGATGGT...CCCCGTCTCTACTGAAATACAAAAATTAGCCGGGTTTTGTGGCCAGCGCCTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377973.4 |
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| CDS GCA 90 bp | GTGCCCGTTTCCTTGTCTCCCTTTGCTTGTAACTACCAGGACTTCTaGTCCGGCTTCTCCGGCTCCTTTCCTCCCTGCCGTGGCTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: VPVSLSPFACNYQDF*SGFSGSFPPCRGFC Trigger: GCAGAAGCCACGGCAGGGAGGAAAGGAGCCGGAGAAGCCGGAGCAGAAGTCCTGGTAGTTACAAGCAAAGGGAGACAAGGAAACGGGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342016.8 |
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| CDS GCA 90 bp | ATGAAGAACTCTAGCCACGAAACAGCTTTTAACAGAACAATGACATaGGTGTCAAATAAAGTCACTTTACCTTTCCTCTTGAAAGTATGC | + |
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Preference number: 5 (lower is better) Translates to: MKNSSHETAFNRTMT*VSNKVTLPFLLKVC Trigger: GCATACTTTCAAGAGGAAAGGTAAAGTGACTTTATTTGACACGCATGTCATTGTTCTGTTAAAAGCTGTTTCGTGGCTAGAGTTCTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472169.1 |
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| CDS GCA 72 bp | TCCTTGTCTCCCTTTGCTTGTAACTACCAGGACTTCTaGTCCGGCTTCTCCGGCTCCTTTCCTCCCTGCCGT | + |
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Preference number: 6 (lower is better) Translates to: SLSPFACNYQDF*SGFSGSFPPCR Trigger: ACGGCAGGGAGGAAAGGAGCCGGAGAAGCCGGAGCAGAAGTCCTGGTAGTTACAAGCAAAGGGAGACAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342016.8 |
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| CDS CAA 90 bp | TTGCTCTTCACCAGGATTTCGCTGTGCCCGTTTCCTTGTCTCCCTTaGCTTGTAACTACCAGGACTTCTGCTCCGGCTTCTCCGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LLFTRISLCPFPCLP*LVTTRTSAPASPAP Trigger: AGGAGCCGGAGAAGCCGGAGCAGAAGTCCTGGTAGTTACAAGCAAAGGGAGACAAGGAAACGGGCACAGCGAAATCCTGGTGAAGAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342016.8 |
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| CDS CAA 72 bp | ACCAGGATTTCGCTGTGCCCGTTTCCTTGTCTCCCTTaGCTTGTAACTACCAGGACTTCTGCTCCGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: TRISLCPFPCLP*LVTTRTSAPAS Trigger: AGAAGCCGGAGCAGAAGTCCTGGTAGTTACAAGCAAAGGGAGACAAGGAAACGGGCACAGCGAAATCCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342016.8 |
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| CDS GCA 72 bp | ATTTCTTCTGCTTTGCTCTTCACCAGGATTTCGCTGTaGCCGTTTCCTTGTCTCCCTTTGCTTGTAACTACC | + |
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Preference number: 6 (lower is better) Translates to: ISSALLFTRISL*PFPCLPLLVTT Trigger: GGTAGTTACAAGCAAAGGGAGACAAGGAAACGGGCACAGCGAAATCCTGGTGAAGAGCAAAGCAGAAGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342016.8 |
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| CDS TCA 72 bp | AGAACTCTAGCCACGAAACAGCTTTTAACAGAACAATaGCATGCGTGTCAAATAAAGTCACTTTACCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: RTLATKQLLTEQ*HACQIKSLYLS Trigger: GGAAAGGTAAAGTGACTTTATTTGACACGCATGTCATTGTTCTGTTAAAAGCTGTTTCGTGGCTAGAGTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472169.1 |
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