RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHST4 (Homo sapiens)

Ensembl gene IDs: ENSG00000140835

Ensembl transcript IDs: ENST00000338482.5, ENST00000539698.4, ENST00000572693.1

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGTaGTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGCCCAG +
Preference number: 1 (lower is better)
Translates to: CGQGGLWINSTDTVS*LIGLQATKSLKSAQ
Trigger: CTGGGCAGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR TCA 90 bp CCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTaGTACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCT +
Preference number: 1 (lower is better)
Translates to: PLGKMWTGRFMDQFH*YCVVLNRPPGHKVS
Trigger: AGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 90 bp GAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGGAGGTTTATaGATCAATTCCACTGATACTGTGTCGTGCTTAATAGGCCTCCAG +
Preference number: 1 (lower is better)
Translates to: ERSIPHWARCGQGGL*INSTDTVSCLIGLQ
Trigger: CTGGAGGCCTATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR TCA 90 bp AGTCTGTTTTCTAGACACAAGCATGGACACAAAAGTCCTTCTGCTTaGGCACGTGTGGACACAACTCACACTCAGTGTGATACCCACAGA +
Preference number: 1 (lower is better)
Translates to: SLFSRHKHGHKSPSA*ARVDTTHTQCDTHR
Trigger: TCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTCTAGAAAACAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 90 bp GTGGAAAATGCTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTaGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGAT +
Preference number: 1 (lower is better)
Translates to: VENAGELFGERSIPH*ARCGQGGLWINSTD
Trigger: ATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAGCATTTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 90 bp CTTGAATCCACTGGGAACTCCAAGGGCTCAGAATTTGCATCTCTGTaGAAAATGCTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATT +
Preference number: 1 (lower is better)
Translates to: LESTGNSKGSEFASL*KMLVSSLVKDPFPI
Trigger: AATGGGGAATGGATCTTTCACCAAAGAGCTCACCAGCATTTTCCACAGAGATGCAAATTCTGAGCCCTTGGAGTTCCCAGTGGATTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAAC +
Preference number: 2 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPEADTR*QQSLLN
Trigger: GTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTC...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAAC +
Preference number: 2 (lower is better)
Translates to: WARCGQGGLWINSTDTVSEADTR*QQSLLN
Trigger: GTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTC...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGCTGCTTGAGCACGTGTaGACACAACTCACACTCAGT +
Preference number: 2 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRLLEHV*TQLTLS
Trigger: ACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAG...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR TCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGAGGCCACAAAGTCTCTaGAGTCTGCCCAGACAGGAA +
Preference number: 2 (lower is better)
Translates to: WARCGQGGLWINSTDTVSRPQSL*SLPRQE
Trigger: TTCCTGTCTGGGCAGACTTCAGAGACTTTGTGGCCT...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CAA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTaGTTCCCACTTCCTTCCTTGAATCCACTGGGAACTCCAAGGGCT +
Preference number: 2 (lower is better)
Translates to: LPIAVMVKLISRHPT*FPLPSLNPLGTPRA
Trigger: AGCCCTTGGAGTTCCCAGTGGATTCAAGGAAGGAAGTGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR TCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGAGCATTCAGAGAAAGTaGCTGAGGCTGACACCAGGT +
Preference number: 2 (lower is better)
Translates to: PIGQDVDREVYGSIPLILSIQRK*LRLTPG
Trigger: ACCTGGTGTCAGCCTCAGTCACTTTCTCTGAATGCT...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR GCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCACACAAAAGTCCTTCTaGTTGAGCACGTGTGGACAC +
Preference number: 2 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPTQKSF*LSTCGH
Trigger: GTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR GCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAACTGGTGGGATGTGCTaGTCACATAAGGTTCCCCAG +
Preference number: 2 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPTGGMC*SHKVPQ
Trigger: CTGGGGAACCTTATGTGAGCAGCACATCCCACCAGT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR GCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGAAAGTCTCTGAAGTCTaGCCAGACAGGAAGATCAAG +
Preference number: 2 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRKVSEV*PDRKIK
Trigger: CTTGATCTTCCTGTCTGGGCAGACTTCAGAGACTTT...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCTGCTTGAGCACGTGTaGACACAACTCACACTCAGT +
Preference number: 2 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFLLEHV*TQLTLS
Trigger: ACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAG...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR TCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAAGCATTCAGAGAAAGTaGCTGAGGCTGACACCAGGT +
Preference number: 2 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPSIQRK*LRLTPG
Trigger: ACCTGGTGTCAGCCTCAGTCACTTTCTCTGAATGCT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR TCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTAAAAGTCCTTCTGCTTaGGCACGTGTGGACACAACT +
Preference number: 2 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSKSPSA*ARVDTT
Trigger: AGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTT...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR TCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAAAAAGTCCTTCTGCTTaGGCACGTGTGGACACAACT +
Preference number: 2 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGKSPSA*ARVDTT
Trigger: AGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR GCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGACACAAAAGTCCTTCTaGTTGAGCACGTGTGGACAC +
Preference number: 2 (lower is better)
Translates to: WARCGQGGLWINSTDTVSTQKSF*LSTCGH
Trigger: GTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGT...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGAATACCCTGTTTCACTaGTGGGATGTGCTGCTCACA +
Preference number: 2 (lower is better)
Translates to: PIGQDVDREVYGSIPLILNTLFH*WDVLLT
Trigger: TGTGAGCAGCACATCCCACCAGTGAAACAGGGTATT...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAGAATTTGCATCTCTGTaGAAAATGCTGGTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPEFASL*KMLVSS
Trigger: AGAGCTCACCAGCATTTTCCACAGAGATGCAAATTC...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 72 bp AGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTaGACACAACTCACACTCAGTGTGATACCCACAGAC +
Preference number: 3 (lower is better)
Translates to: SMDTKVLLLEHV*TQLTLSVIPTD
Trigger: GTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CAA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGCAAAAGTCCTTCTGCTaGAGCACGTGTGGACACAAC +
Preference number: 3 (lower is better)
Translates to: PIGQDVDREVYGSIPLILQKSFC*STCGHN
Trigger: GTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTG...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR TCA 72 bp AAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTaGTACTGTGTCGTGCTTAATAGGCCTCCAGGCCAC +
Preference number: 3 (lower is better)
Translates to: KMWTGRFMDQFH*YCVVLNRPPGH
Trigger: GTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CAA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCACAAAAGTCCTTCTGCTaGAGCACGTGTGGACACAAC +
Preference number: 3 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPQKSFC*STCGHN
Trigger: GTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTG...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR-3UTR CAA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCACCAAGGGCTCAGAATTaGCATCTCTGTGGAAAATGC +
Preference number: 3 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPPRAQN*HLCGKC
Trigger: GCATTTTCCACAGAGATGCAAATTCTGAGCCCTTGG...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR GCA 72 bp GGAGGTTTATGGATCAATTCCACTGATACTGTGTCGTaGTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAG +
Preference number: 3 (lower is better)
Translates to: GGLWINSTDTVS*LIGLQATKSLK
Trigger: CTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR GCA 72 bp GCTTCACAGGTCAAAGTCTTCTATGTGATGGGAAAATaGAGAGGGGAAGTGATATTCAAATGCAGCCCAGGC +
Preference number: 3 (lower is better)
Translates to: ASQVKVFYVMGK*RGEVIFKCSPG
Trigger: GCCTGGGCTGCATTTGAATATCACTTCCCCTCTGCATTTTCCCATCACATAGAAGACTTTGACCTGTGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 72 bp ACTGGGAACTCCAAGGGCTCAGAATTTGCATCTCTGTaGAAAATGCTGGTGAGCTCTTTGGTGAAAGATCCA +
Preference number: 3 (lower is better)
Translates to: TGNSKGSEFASL*KMLVSSLVKDP
Trigger: TGGATCTTTCACCAAAGAGCTCACCAGCATTTTCCACAGAGATGCAAATTCTGAGCCCTTGGAGTTCCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CCA 72 bp ATTCCCCATTGGGCAAGATGTGGACAGGGAGGTTTATaGATCAATTCCACTGATACTGTGTCGTGCTTAATA +
Preference number: 3 (lower is better)
Translates to: IPHWARCGQGGL*INSTDTVSCLI
Trigger: TATTAAGCACGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGTGCCCTTGCCTCGGGTaGTGTTATGCACCCAGGTCT +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRCPCLG*CYAPRS
Trigger: AGACCTGGGTGCATAACATCACCCGAGGCAAGGGCA...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGACAGAACCAGCACGTaGATGCGCTCGGGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSDRTST*MRSGCA
Trigger: GGCACAGCCCGAGCGCATGCACGTGCTGGTTCTGTC...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAGACAGAACCAGCACGTaGATGCGCTCGGGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGDRTST*MRSGCA
Trigger: GGCACAGCCCGAGCGCATGCACGTGCTGGTTCTGTC...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGTCCCGCACAGCCATGTaGAGCATCCAGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQSRTAM*SIQAVL
Trigger: GAGCACCGCCTGGATGCTGCACATGGCTGTGCGGGA...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTTCCCGCACAGCCATGTaGAGCATCCAGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSSRTAM*SIQAVL
Trigger: GAGCACCGCCTGGATGCTGCACATGGCTGTGCGGGA...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCTACATTCGGGAAGTCTaGGCCACAGGGGCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPYIREV*ATGARA
Trigger: GGCTCGAGCCCCTGTGGCCCAGACTTCCCGAATGTA...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCCTTGCAAGACGGGCTTaGGAAAGCACTCGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLLARRA*ESTRSQ
Trigger: CTGGGAGCGAGTGCTTTCTCAAGCCCGTCTTGCAAG...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR TCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCACCTCAAAGGGCTGTTaGCTGCACAGGAGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPTSKGC*LHRSLQ
Trigger: CTGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGGCACGATATGCAGGTTaGGGGAGGGGTCTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRARYAG*GRGLSA
Trigger: TGCTGAAAGACCCCTCCCTCAACCTGCATATCGTGC...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCTGCCCTTGCCTCGGGTaGTGTTATGCACCCAGGTCT +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPCPCLG*CYAPRS
Trigger: AGACCTGGGTGCATAACATCACCCGAGGCAAGGGCA...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAAGGGGTGGGGAGACTaGTTGAGGTGGGCTGGGAGA +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQKGWGD*LRWAGR
Trigger: TCTCCCAGCCCACCTCAAGCAGTCTCCCCACCCCTT...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGCCCACTGAAAGAGGCTaGACTGTCTCCGGGGACCAG +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQPTERG*TVSGDQ
Trigger: CTGGTCCCCGGAGACAGTCCAGCCTCTTTCAGTGGG...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGACCCACTGAAAGAGGCTaGACTGTCTCCGGGGACCAG +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGPTERG*TVSGDQ
Trigger: CTGGTCCCCGGAGACAGTCCAGCCTCTTTCAGTGGG...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTTACATTCGGGAAGTCTaGGCCACAGGGGCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSYIREV*ATGARA
Trigger: GGCTCGAGCCCCTGTGGCCCAGACTTCCCGAATGTA...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAAC +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDREADTR*QQSLLN
Trigger: GTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTC...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGACGGCTGTTCTCCCACTaGAAGAGGCTGGACTGTCTC +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGRLFSH*KRLDCL
Trigger: GAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCG...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGCGGCTGTTCTCCCACTaGAAGAGGCTGGACTGTCTC +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQRLFSH*KRLDCL
Trigger: GAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCG...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGACCTCAAAGGGCTGTTaGCTGCACAGGAGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILTSKGC*LHRSLQ
Trigger: CTGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGT...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGGCAGTAGCATTGTGCTaGAGTGGAAGACCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRAVALC*SGRPCG
Trigger: GCCACAAGGTCTTCCACTTCAGCACAATGCTACTGC...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS-3UTR GCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCATGCGCTCGGGCTGTaGCTTCATAGACAGGGAGCT +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSHALGL*LHRQGA
Trigger: AGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGACATGCGCTCGGGCTGTaGCTTCATAGACAGGGAGCT +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGHALGL*LHRQGA
Trigger: AGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATG...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAGAACCAGCACGTGCATaGGCTCGGGCTGTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIEPARA*ARAVPS
Trigger: TGAAGGCACAGCCCGAGCGCATGCACGTGCTGGTTC...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCATCCAGGCGGTGCTCTaGTTGAAGGTCATCCACACG +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPIQAVL*LKVIHT
Trigger: CGTGTGGATGACCTTCAAGCAGAGCACCGCCTGGAT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCCAAAGGGCTGTTGACTaGACAGGAGCCTGCAGTGAG +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLQRAVD*TGACSE
Trigger: CTCACTGCAGGCTCCTGTGCAGTCAACAGCCCTTTG...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAGGGTCCCGGACCAGGTaGACGATATGCAGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPGSRTR*TICRLR
Trigger: CCTCAACCTGCATATCGTGCACCTGGTCCGGGACCC...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAGGGTCCCGGACCAGGTaGACGATATGCAGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIGSRTR*TICRLR
Trigger: CCTCAACCTGCATATCGTGCACCTGGTCCGGGACCC...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCTGAGACTCAAGGGGTaGGGAGACTGCTTGAGGTGG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFLRLKG*GDCLRW
Trigger: CCACCTCAAGCAGTCTCCCCACCCCTTGAGTCTCAG...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGTTCCTGCAGGGCCTTaGGCAAGGACTGGATGGTCT +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSVPAGP*ARTGWS
Trigger: AGACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAAC...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGGACCAGCGCCAAGCCTaGGAGACATTAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILDQRQA*ETLRAS
Trigger: GGATGCCCTTAATGTCTCCCAGGCTTGGCGCTGGTC...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCGACCAGCGCCAAGCCTaGGAGACATTAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFDQRQA*ETLRAS
Trigger: GGATGCCCTTAATGTCTCCCAGGCTTGGCGCTGGTC...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCAAGTGGAAGACCTTGTaGCTTGGGCTTCCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLKWKTL*LGLPCC
Trigger: GCAGCAGGGAAGCCCAAGCCACAAGGTCTTCCACTT...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS-3UTR TCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCGCTGGCTTTGGCAGATaGCCTGCATCACATAGTAGG +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLAGFGR*PASHSR
Trigger: CCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGC...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGTTATGCACCCAGGTCTaGAGATGGGGCAAGAATTCC +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRLCTQV*RWGKNS
Trigger: GGAATTCTTGCCCCATCTTCAGACCTGGGTGCATAA...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGGTTCTTGTTCAGATCTaGCGTGGCGGTAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILVLVQI*RGGSPA
Trigger: TGCTGGGCTACCGCCACGTCAGATCTGAACAAGAAC...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGTTCTTGTTCAGATCTaGCGTGGCGGTAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSVLVQI*RGGSPA
Trigger: TGCTGGGCTACCGCCACGTCAGATCTGAACAAGAAC...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCAGGCCACAAAGTCTCTaGAGTCTGCCCAGACAGGAA +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLRPQSL*SLPRQE
Trigger: TTCCTGTCTGGGCAGACTTCAGAGACTTTGTGGCCT...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGTCCCACTTCCTTCCTTaGATCCACTGGGAACTCCAA +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRSHFLP*IHWELQ
Trigger: TTGGAGTTCCCAGTGGATTCAAGGAAGGAAGTGGGA...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGATCCAGGCGGTGCTCTaGTTGAAGGTCATCCACACG +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQIQAVL*LKVIHT
Trigger: CGTGTGGATGACCTTCAAGCAGAGCACCGCCTGGAT...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGCAAAGGGCTGTTGACTaGACAGGAGCCTGCAGTGAG +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILQRAVD*TGACSE
Trigger: CTCACTGCAGGCTCCTGTGCAGTCAACAGCCCTTTG...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACTGGTGGGATGTGCTaGTCACATAAGGTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLTGGMC*SHKVPQ
Trigger: CTGGGGAACCTTATGTGAGCAGCACATCCCACCAGT...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGTTCACTGGTGGGATGTaGTGCTCACATAAGGTTCCC +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRFTGGM*CSHKVP
Trigger: GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAA...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGAGCATTGTGCTGAAGTaGAAGACCTTGCAAGACGGG +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRSIVLK*KTLQDG
Trigger: CCCGTCTTGCAAGGTCTTCCACTTCAGCACAATGCT...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCGCCAAGATGGCCATCTaGGAAACCAGAAACAGCAGG +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLAKMAI*ETRNSR
Trigger: CCTGCTGTTTCTGGTTTCCCAGATGGCCATCTTGGC...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAGTTCCTGCAGGGCCTTaGGCAAGGACTGGATGGTCT +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPVPAGP*ARTGWS
Trigger: AGACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAAC...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAAC +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFEADTR*QQSLLN
Trigger: GTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTC...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGCTGGCTTTGGCAGATaGCCTGCATCACATAGTAGG +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSAGFGR*PASHSR
Trigger: CCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGC...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCTTATGCACCCAGGTCTaGAGATGGGGCAAGAATTCC +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPLCTQV*RWGKNS
Trigger: GGAATTCTTGCCCCATCTTCAGACCTGGGTGCATAA...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCAGCATTCAGAGAAAGTaGCTGAGGCTGACACCAGGT +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLSIQRK*LRLTPG
Trigger: ACCTGGTGTCAGCCTCAGTCACTTTCTCTGAATGCT...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGAAAAGTCCTTCTGCTTaGGCACGTGTGGACACAACT +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRKSPSA*ARVDTT
Trigger: AGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTT...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCACTGGTGGGATGTGCTaGTCACATAAGGTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFTGGMC*SHKVPQ
Trigger: CTGGGGAACCTTATGTGAGCAGCACATCCCACCAGT...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCACTGATACTGTGTCGTaGTTAATAGGCCTCCAGGCC +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPTDTVS*LIGLQA
Trigger: GGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGCATTTTCCCCCAGACTaGAGGCATCCTGGCATGTTG +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILHFPPD*RHPGML
Trigger: CAACATGCCAGGATGCCTCCAGTCTGGGGGAAAATG...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCTGGGCAAGGACTGGATaGTCTTGTAGATCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPWARTG*SCRSPA
Trigger: AGCTGGAGATCTACAAGACCATCCAGTCCTTGCCCA...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTTTGTGTGGAAAGCGTaGTCACCCATGCCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILFVWKA*SPMPLP
Trigger: AGGCAAGGGCATGGGTGACCACGCTTTCCACACAAA...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCTTTGTGTGGAAAGCGTaGTCACCCATGCCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFFVWKA*SPMPLP
Trigger: AGGCAAGGGCATGGGTGACCACGCTTTCCACACAAA...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCAGATCCATTCCCCATTaGGCAAGATGTGGACAGGGA +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPRSIPH*ARCGQG
Trigger: TCCCTGTCCACATCTTGCCCAATGGGGAATGGATCT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTGAAGACCTTGTGGCTTaGGCTTCCCTGCTGCTTTTG +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSEDLVA*ASLLLL
Trigger: CAAAAGCAGCAGGGAAGCCCAAGCCACAAGGTCTTC...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS-3UTR TCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAGCTGGGAGAAGCAAATaGGGAAGCATTTTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPAGRSK*GSIFPQ
Trigger: CTGGGGGAAAATGCTTCCTCATTTGCTTCTCCCAGC...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR TCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCGCAGTAGCATTGTGCTaGAGTGGAAGACCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFAVALC*SGRPCK
Trigger: CTTGCAAGGTCTTCCACTTCAGCACAATGCTACTGC...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR TCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCTTTCATCTTGTGGGATaGTGTCACAGGCAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFFHLVG*CHRQVQ
Trigger: CTGCACCTGCCTGTGACATCATCCCACAAGATGAAA...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTTTCATCTTGTGGGATaGTGTCACAGGCAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILFHLVG*CHRQVQ
Trigger: CTGCACCTGCCTGTGACATCATCCCACAAGATGAAA...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCTCGCCACAGGCTTTCTaGAGTCGAGAAACCTTTTCA +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLSPQAF*SRETFS
Trigger: TGAAAAGGTTTCTCGACTTCAGAAAGCCTGTGGCGA...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGAGGCCACAAAGTCTCTaGAGTCTGCCCAGACAGGAA +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRRPQSL*SLPRQE
Trigger: TTCCTGTCTGGGCAGACTTCAGAGACTTTGTGGCCT...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGTGCTGCCCAAAAAGCTaGCCCACAAAAGAAGAGCCA +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSCCPKS*PTKEEP
Trigger: TGGCTCTTCTTTTGTGGGGCAGCTTTTTGGGCAGCA...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTTCACTGGTGGGATGTaGTGCTCACATAAGGTTCCC +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILFTGGM*CSHKVP
Trigger: GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAA...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGATCTCCAGCTGGCTTTaGCAGATGACCTGCATCACA +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSISSWL*QMTCIT
Trigger: TGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGAT...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGGGCAAGGACTGGATaGTCTTGTAGATCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILWARTG*SCRSPA
Trigger: AGCTGGAGATCTACAAGACCATCCAGTCCTTGCCCA...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATATCCCTGGCATTTGTGTaGAAAGCGTGGTCACCCATG +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVISLAFV*KAWSPM
Trigger: CATGGGTGACCACGCTTTCCACACAAATGCCAGGGA...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGTCCCTGGCATTTGTGTaGAAAGCGTGGTCACCCATG +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRSLAFV*KAWSPM
Trigger: CATGGGTGACCACGCTTTCCACACAAATGCCAGGGA...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAAGCCCAGCAAATTCATaGCATCGCCACAGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGSPANS*HRHRLS
Trigger: AGAAAGCCTGTGGCGATGCCATGAATTTGCTGGGCT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTCTGCTTGAGCACGTGTaGACACAACTCACACTCAGT +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSLLEHV*TQLTLS
Trigger: ACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAG...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGAGATCCATTCCCCATTaGGCAAGATGTGGACAGGGA +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSRSIPH*ARCGQG
Trigger: TCCCTGTCCACATCTTGCCCAATGGGGAATGGATCT...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
3UTR CAA 72 bp GCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTaGTTCCCACTTCCTTCCTTGAATCCACTGGGAACT +
Preference number: 4 (lower is better)
Translates to: AVMVKLISRHPT*FPLPSLNPLGT
Trigger: AGTTCCCAGTGGATTCAAGGAAGGAAGTGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATATCCCACTTCCTTCCTTaGATCCACTGGGAACTCCAA +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVISHFLP*IHWELQ
Trigger: TTGGAGTTCCCAGTGGATTCAAGGAAGGAAGTGGGA...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAAATGCAGAGGGGAAGTaGTATTCAAATGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGNAEGK*YSNAAQ
Trigger: CTGGGCTGCATTTGAATATCACTTCCCCTCTGCATT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTAATGCAGAGGGGAAGTaGTATTCAAATGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSNAEGK*YSNAAQ
Trigger: CTGGGCTGCATTTGAATATCACTTCCCCTCTGCATT...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATATGCTGCCCAAAAAGCTaGCCCACAAAAGAAGAGCCA +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVICCPKS*PTKEEP
Trigger: TGGCTCTTCTTTTGTGGGGCAGCTTTTTGGGCAGCA...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCAGTTTTTGCTCATGCTaGCCCATCACAATGCGACTG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFSFCSC*PITMRL
Trigger: CAGTCGCATTGTGATGGGGCAGCATGAGCAAAAACT...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGTTTTTGCTCATGCTaGCCCATCACAATGCGACTG +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQSFCSC*PITMRL
Trigger: CAGTCGCATTGTGATGGGGCAGCATGAGCAAAAACT...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCTTGAGTTTTTGCTCATaGTGCCCCATCACAATGCGA +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLLSFCS*CPITMR
Trigger: TCGCATTGTGATGGGGCAGCATGAGCAAAAACTCAA...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCACACAAAAGTCCTTCTaGTTGAGCACGTGTGGACAC +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFTQKSF*LSTCGH
Trigger: GTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGT...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGACTGATACTGTGTCGTaGTTAATAGGCCTCCAGGCC +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRTDTVS*LIGLQA
Trigger: GGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGTTGTGGCTGTACATGTaGAAGAATAGAGCCAAGATG +
Preference number: 4 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRLWLYM*KNRAKM
Trigger: CATCTTGGCTCTATTCTTCCACATGTACAGCCACAA...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGCAGGTAGAAAACATCTaGGTGCTGCCCAAAAAGCTG +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQQVENI*VLPKKL
Trigger: CAGCTTTTTGGGCAGCACCCAGATGTTTTCTACCTG...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAATCTCCAGCTGGCTTTaGCAGATGACCTGCATCACA +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIISSWL*QMTCIT
Trigger: TGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGAT...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAAGCCCAGCAAATTCATaGCATCGCCACAGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPSPANS*HRHRLS
Trigger: AGAAAGCCTGTGGCGATGCCATGAATTTGCTGGGCT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCCATTGGGCAAGATGTaGACAGGGAGGTTTATGGAT +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSPLGKM*TGRFMD
Trigger: ATCCATAAACCTCCCTGTCCACATCTTGCCCAATGG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAAGCATTGTGCTGAAGTaGAAGACCTTGTGGCTTGGG +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPSIVLK*KTLWLG
Trigger: CCCAAGCCACAAGGTCTTCCACTTCAGCACAATGCT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS-3UTR TCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATATCCGCTAAGCACAAATaGCAAGAACCTGTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVISAKHK*QEPVVL
Trigger: AAGCACCACAGGTTCTTGTCATTTGTGCTTAGCGGA...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR TCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCATGGCATGTTGACTACTaGAAGGCAACTGTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPWHVDY*KATVKV
Trigger: GACCTTCACAGTTGCCTTTCAGTAGTCAACATGCCA...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR TCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGTGCGACTGTCAATCATaGGATCTCCCTTTGTGCGTT +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRCDCQS*DLPLCV
Trigger: AACGCACAAAGGGAGATCTCATGATTGACAGTCGCA...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGTCGCCACAGGCTTTCTaGAGTCGAGAAACCTTTTCA +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRSPQAF*SRETFS
Trigger: TGAAAAGGTTTCTCGACTTCAGAAAGCCTGTGGCGA...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGTTGAGTTTTTGCTCATaGTGCCCCATCACAATGCGA +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQLSFCS*CPITMR
Trigger: TCGCATTGTGATGGGGCAGCATGAGCAAAAACTCAA...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGATCCTTCTTGAGTTTTTaGTCATGCTGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGSFLSF*SCCPIT
Trigger: TGTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGA...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp CCCATTGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTCCTTCTTGAGTTTTTaGTCATGCTGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: PIGQDVDREVYGSIPLILSFLSF*SCCPIT
Trigger: TGTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGA...CAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCAATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGAAAGTCTCTGAAGTCTaGCCAGACAGGAAGATCAAG +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSKVSEV*PDRKIK
Trigger: CTTGATCTTCCTGTCTGGGCAGACTTCAGAGACTTT...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAAGGGAGCTGATGTTGTaGCTGTACATGTGGAAGAAT +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGRELML*LYMWKN
Trigger: ATTCTTCCACATGTACAGCCACAACATCAGCTCCCT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGCAGGTAGAAAACATCTaGGTGCTGCCCAAAAAGCTG +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRQVENI*VLPKKL
Trigger: CAGCTTTTTGGGCAGCACCCAGATGTTTTCTACCTG...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCGATGATTTCATCTTGTaGGATGATGTCACAGGCAGG +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFDDFIL*DDVTGR
Trigger: CCTGCCTGTGACATCATCCCACAAGATGAAATCATC...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGGATGATTTCATCTTGTaGGATGATGTCACAGGCAGG +
Preference number: 4 (lower is better)
Translates to: WARCGQGGLWINSTDTVSDDFIL*DDVTGR
Trigger: CCTGCCTGTGACATCATCCCACAAGATGAAATCATC...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAAATACCCTGTTTCACTaGTGGGATGTGCTGCTCACA +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVINTLFH*WDVLLT
Trigger: TGTGAGCAGCACATCCCACCAGTGAAACAGGGTATT...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAAATACCCTGTTTCACTaGTGGGATGTGCTGCTCACA +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPNTLFH*WDVLLT
Trigger: TGTGAGCAGCACATCCCACCAGTGAAACAGGGTATT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCGGACAGGGAGGTTTATaGATCAATTCCACTGATACT +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPGQGGL*INSTDT
Trigger: AGTATCAGTGGAATTGATCCATAAACCTCCCTGTCC...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCACCATTGGGCAAGATGTaGACAGGGAGGTTTATGGAT +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPPLGKM*TGRFMD
Trigger: ATCCATAAACCTCCCTGTCCACATCTTGCCCAATGG...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGAAAGTCTCTGAAGTCTaGCCAGACAGGAAGATCAAG +
Preference number: 4 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRKVSEV*PDRKIK
Trigger: CTTGATCTTCCTGTCTGGGCAGACTTCAGAGACTTT...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGCAAGGGCTCAGAATTTaGATCTCTGTGGAAAATGCT +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQQGLRI*ISVENA
Trigger: AGCATTTTCCACAGAGATGCAAATTCTGAGCCCTTG...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCTATGTGATGGGAAAATaGAGAGGGGAAGTGATATTC +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLYVMGK*RGEVIF
Trigger: GAATATCACTTCCCCTCTGCATTTTCCCATCACATA...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAGAGTTGTGTGAGCTTTaGGATGATCTTTGCCGATTT +
Preference number: 4 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGELCEL*DDLCRF
Trigger: AAATCGGCAAAGATCATCCCAAAGCTCACACAACTC...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTTTGTGGCTGTACATGTaGAAGAATAGAGCCAAGATG +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSLWLYM*KNRAKM
Trigger: CATCTTGGCTCTATTCTTCCACATGTACAGCCACAA...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAAGGGAGCTGATGTTGTaGCTGTACATGTGGAAGAAT +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIRELML*LYMWKN
Trigger: ATTCTTCCACATGTACAGCCACAACATCAGCTCCCT...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGGGACAGGGAGGTTTATaGATCAATTCCACTGATACT +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQGQGGL*INSTDT
Trigger: AGTATCAGTGGAATTGATCCATAAACCTCCCTGTCC...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGGAATTTGCATCTCTGTaGAAAATGCTGGTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQEFASL*KMLVSS
Trigger: AGAGCTCACCAGCATTTTCCACAGAGATGCAAATTC...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTATGGATCAATTCCACTaGTACTGTGTCGTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSMDQFH*YCVVLN
Trigger: ATTAAGCACGACACAGTATCAGTGGAATTGATCCAT...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR TCA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGATGGATCAATTCCACTaGTACTGTGTCGTGCTTAAT +
Preference number: 4 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQMDQFH*YCVVLN
Trigger: ATTAAGCACGACACAGTATCAGTGGAATTGATCCAT...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCACTTTGGGATGATCTTTaGCGATTTCCATCAGCTAAG +
Preference number: 4 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPLWDDL*RFPSAK
Trigger: CTTAGCTGATGGAAATCGGCAAAGATCATCCCAAAG...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR GCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATACAAGGGCTCAGAATTTaGATCTCTGTGGAAAATGCT +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIQGLRI*ISVENA
Trigger: AGCATTTTCCACAGAGATGCAAATTCTGAGCCCTTG...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCGTGAACTTAAGAGCTTaGTCTTTTGTGCAGAGATTT +
Preference number: 4 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPVNLRA*SFVQRF
Trigger: AAATCTCTGCACAAAAGAGCAAGCTCTTAAGTTCAC...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCTATGTGATGGGAAAATaGAGAGGGGAAGTGATATTC +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFYVMGK*RGEVIF
Trigger: GAATATCACTTCCCCTCTGCATTTTCCCATCACATA...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCGAGCTTGCTCTTTTGTaGAGAGATTTTGTTTCATAT +
Preference number: 4 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLELALL*RDFVSY
Trigger: ATATGAAACAAAATCTCTGCACAAAAGAGCAAGCTC...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCGAGCTTGCTCTTTTGTaGAGAGATTTTGTTTCATAT +
Preference number: 4 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFELALL*RDFVSY
Trigger: ATATGAAACAAAATCTCTGCACAAAAGAGCAAGCTC...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR GCA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAGTGAACTTAAGAGCTTaGTCTTTTGTGCAGAGATTT +
Preference number: 4 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIVNLRA*SFVQRF
Trigger: AAATCTCTGCACAAAAGAGCAAGCTCTTAAGTTCAC...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS GCA 90 bp CCCACAAAAGAAGAGCCAGAGCGCCAGGAAGACAGAACCAGCACGTaGATGCGCTCGGGCTGTGCCTTCATAGACAGGGAGCTGATGTTG +
Preference number: 5 (lower is better)
Translates to: PTKEEPERQEDRTST*MRSGCAFIDRELML
Trigger: CAACATCAGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATGCACGTGCTGGTTCTGTCTTCCTGGCGCTCTGGCTCTTCTTTTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 90 bp GCCTGGGAGACATTAAGGGCATCCCTGGCATTTGTGTGGAAAGCGTaGTCACCCATGCCCTTGCCTCGGGTGATGTTATGCACCCAGGTC +
Preference number: 5 (lower is better)
Translates to: AWETLRASLAFVWKA*SPMPLPRVMLCTQV
Trigger: GACCTGGGTGCATAACATCACCCGAGGCAAGGGCATGGGTGACCACGCTTTCCACACAAATGCCAGGGATGCCCTTAATGTCTCCCAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS-3UTR CAA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCCGTTCCTGCAGGGCCTaGGGCAAGGACTGGATGGTC +
Preference number: 5 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLRSCRA*GKDWMV
Trigger: GACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAACG...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCCAGGCGGTGCTCTGCTaGAAGGTCATCCACACGTGC +
Preference number: 5 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPQAVLC*KVIHTC
Trigger: GCACGTGTGGATGACCTTCAAGCAGAGCACCGCCTG...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGCTGAAGTGGAAGACCTaGTGGCTTGGGCTTCCCTGC +
Preference number: 5 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRLKWKT*WLGLPC
Trigger: GCAGGGAAGCCCAAGCCACAAGGTCTTCCACTTCAG...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS TCA 90 bp TGGCATTTGTGTGGAAAGCGTGGTCACCCATGCCCTTGCCTCGGGTaGTGTTATGCACCCAGGTCTGAAGATGGGGCAAGAATTCCAATC +
Preference number: 5 (lower is better)
Translates to: WHLCGKRGHPCPCLG*CYAPRSEDGARIPI
Trigger: GATTGGAATTCTTGCCCCATCTTCAGACCTGGGTGCATAACATCACCCGAGGCAAGGGCATGGGTGACCACGCTTTCCACACAAATGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS-3UTR CAA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCAGGCGGTGCTCTGCTaGAAGGTCATCCACACGTGC +
Preference number: 5 (lower is better)
Translates to: WARCGQGGLWINSTDTVSQAVLC*KVIHTC
Trigger: GCACGTGTGGATGACCTTCAAGCAGAGCACCGCCTG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCCACCTCAAAGGGCTGTaGACTGCACAGGAGCCTGCA +
Preference number: 5 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLHLKGL*TAQEPA
Trigger: TGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGTG...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATACGTTCCTGCAGGGCCTaGGGCAAGGACTGGATGGTC +
Preference number: 5 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIRSCRA*GKDWMV
Trigger: GACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAACG...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS TCA 90 bp TGGTCACCCATGCCCTTGCCTCGGGTGATGTTATGCACCCAGGTCTaGAGATGGGGCAAGAATTCCAATCCCACGAATTCATACATTCGG +
Preference number: 5 (lower is better)
Translates to: WSPMPLPRVMLCTQV*RWGKNSNPTNSYIR
Trigger: CCGAATGTATGAATTCGTGGGATTGGAATTCTTGCCCCATCTTCAGACCTGGGTGCATAACATCACCCGAGGCAAGGGCATGGGTGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS-3UTR CAA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCCTTGCAAGACGGGCTaGAGAAAGCACTCGCTCCCA +
Preference number: 5 (lower is better)
Translates to: WARCGQGGLWINSTDTVSPCKTG*RKHSLP
Trigger: TGGGAGCGAGTGCTTTCTCAAGCCCGTCTTGCAAGG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CAA 90 bp GACACAAGCATGGACACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCGATCTCCAGCTGGCTTaGGCAGATGACCTGCATCAC +
Preference number: 5 (lower is better)
Translates to: DTSMDTKVLLLEHVWTQLDLQLA*ADDLHH
Trigger: GTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATC...GAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGTGTCCATGCTTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCGATCTCCAGCTGGCTTaGGCAGATGACCTGCATCAC +
Preference number: 5 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPDLQLA*ADDLHH
Trigger: GTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATC...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGTGGTCACCCATGCCCTaGCCTCGGGTGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQWSPMP*PRVMLC
Trigger: GCATAACATCACCCGAGGCAAGGGCATGGGTGACCA...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTGATACTGTGTCGTGCTTAATAGGCCTCCAGGCCACAAAGTCTCTGAAGTCTTGGTCACCCATGCCCTaGCCTCGGGTGATGTTATGC +
Preference number: 5 (lower is better)
Translates to: TDTVSCLIGLQATKSLKSWSPMP*PRVMLC
Trigger: GCATAACATCACCCGAGGCAAGGGCATGGGTGACCA...AGACTTCAGAGACTTTGTGGCCTGGAGGCCTATTAAGCACGACACAGTATCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGGGGCATCCCTGGCATTaGTGTGGAAAGCGTGGTCAC +
Preference number: 5 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQGHPWH*CGKRGH
Trigger: GTGACCACGCTTTCCACACAAATGCCAGGGATGCCC...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAGGGCATCCCTGGCATTaGTGTGGAAAGCGTGGTCAC +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGGHPWH*CGKRGH
Trigger: GTGACCACGCTTTCCACACAAATGCCAGGGATGCCC...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS TCA 90 bp GAAGCATTTTCCCCCAGACTGGAGGCATCCTGGCATGTTGACTACTaGAAGGCAACTGTGAAGGTCAACTCCCTTGGAAGAGAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: EAFSPRLEASWHVDY*KATVKVNSLGRERE
Trigger: CTCTCTCTCTCTTCCAAGGGAGTTGACCTTCACAGTTGCCTTTCAGTAGTCAACATGCCAGGATGCCTCCAGTCTGGGGGAAAATGCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS CCA 90 bp GGCTGTGCCTTCATAGACAGGGAGCTGATGTTGTGGCTGTACATGTaGAAGAATAGAGCCAAGATGGCCATCTGGGAAACCAGAAACAGC +
Preference number: 5 (lower is better)
Translates to: GCAFIDRELMLWLYM*KNRAKMAIWETRNS
Trigger: GCTGTTTCTGGTTTCCCAGATGGCCATCTTGGCTCTATTCTTCCACATGTACAGCCACAACATCAGCTCCCTGTCTATGAAGGCACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 90 bp AAGGCTCAGAAGCATTCAGAGAAAGTGACTGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAACCCTCTTAGTGGATTTGCTCAGGGA +
Preference number: 5 (lower is better)
Translates to: KAQKHSEKVTEADTR*QQSLLNPLSGFAQG
Trigger: TCCCTGAGCAAATCCACTAAGAGGGTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTCAGTCACTTTCTCTGAATGCTTCTGAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS-3UTR CAA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCGACAGGGAGCTGATGTaGTGGCTGTACATGTGGAAG +
Preference number: 5 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPDRELM*WLYMWK
Trigger: CTTCCACATGTACAGCCACAACATCAGCTCCCTGTC...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGCACCTCAAAGGGCTGTaGACTGCACAGGAGCCTGCA +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRHLKGL*TAQEPA
Trigger: TGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGTG...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGTGCACGATATGCAGGTaGAGGGAGGGGTCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: WARCGQGGLWINSTDTVSCTICR*REGSFS
Trigger: GCTGAAAGACCCCTCCCTCAACCTGCATATCGTGCA...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCAAGATCCATTCCCCATaGGGCAAGATGTGGACAGGG +
Preference number: 5 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPKIHSP*GKMWTG
Trigger: CCCTGTCCACATCTTGCCCAATGGGGAATGGATCTT...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp AGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCCCCTGAAGTGGAAGACCTaGCAAGACGGGCTTGAGAAA +
Preference number: 5 (lower is better)
Translates to: RRAIPCFTGGMCCSHKVPLKWKT*QDGLEK
Trigger: TTTCTCAAGCCCGTCTTGCAAGGTCTTCCACTTCAG...GGGAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAGACAGGGAGCTGATGTaGTGGCTGTACATGTGGAAG +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGDRELM*WLYMWK
Trigger: CTTCCACATGTACAGCCACAACATCAGCTCCCTGTC...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCACCCTCTTAGTGGATTaGCTCAGGGACAGTCCAGGT +
Preference number: 5 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFTLLVD*LRDSPG
Trigger: ACCTGGACTGTCCCTGAGCAAATCCACTAAGAGGGT...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAACCCTCTTAGTGGATTaGCTCAGGGACAGTCCAGGT +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGTLLVD*LRDSPG
Trigger: ACCTGGACTGTCCCTGAGCAAATCCACTAAGAGGGT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGCCAAGGGCTCAGAATTaGCATCTCTGTGGAAAATGC +
Preference number: 5 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRPRAQN*HLCGKC
Trigger: GCATTTTCCACAGAGATGCAAATTCTGAGCCCTTGG...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAGGAAGACCTTGTGGCTaGGGCTTCCCTGCTGCTTTT +
Preference number: 5 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPGRPCG*GFPAAF
Trigger: AAAAGCAGCAGGGAAGCCCAAGCCACAAGGTCTTCC...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000539698.4
CDS-3UTR CAA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCTCCTTCTTGAGTTTTaGCTCATGCTGCCCCATCAC +
Preference number: 5 (lower is better)
Translates to: WARCGQGGLWINSTDTVSLLLEF*LMLPHH
Trigger: GTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGAG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp CTGGTGAGCTCTTTGGTGAAAGATCCATTCCCCATTGGGCAAGATGTGGACAGGCATCACATAGTAGGGTaGGTCCTCCTTCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: LVSSLVKDPFPIGQDVDRHHIVG*VLLLEF
Trigger: AAACTCAAGAAGGAGGACCAACCCTACTATGTGATG...CCTGTCCACATCTTGCCCAATGGGGAATGGATCTTTCACCAAAGAGCTCACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGCAGGTTTCTCTGTTCTaGTTCAGATCTGACGTGGCG +
Preference number: 5 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQQVSLF*FRSDVA
Trigger: CGCCACGTCAGATCTGAACAAGAACAGAGAAACCTG...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGAATGCTGGTGAGCTCTTaGGTGAAAGATCCATTCCCC +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGMLVSS*VKDPFP
Trigger: GGGGAATGGATCTTTCACCAAAGAGCTCACCAGCAT...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GAAGAAGAGCAATACCCTGTTTCACTGGTGGGATGTGCTGCTCACATAAGGTTCATGCTGGTGAGCTCTTaGGTGAAAGATCCATTCCCC +
Preference number: 5 (lower is better)
Translates to: EEEQYPVSLVGCAAHIRFMLVSS*VKDPFP
Trigger: GGGGAATGGATCTTTCACCAAAGAGCTCACCAGCAT...GAACCTTATGTGAGCAGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGATTCCCACTTCCTTCCTaGAATCCACTGGGAACTCCA +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGFPLPS*NPLGTP
Trigger: TGGAGTTCCCAGTGGATTCAAGGAAGGAAGTGGGAA...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GTGGACACAACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGTAGGCATCCAACCTaGTTCCCACTTCCTTCCTTG +
Preference number: 5 (lower is better)
Translates to: VDTTHTQCDTHRHVVKAQSRHPT*FPLPSL
Trigger: CAAGGAAGGAAGTGGGAACAAGGTTGGATGCCTACT...CTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGTTGTGTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATAAGGCATCCTGGCATGTaGACTACTGAAAGGCAACTG +
Preference number: 5 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIRHPGM*TTERQL
Trigger: CAGTTGCCTTTCAGTAGTCAACATGCCAGGATGCCT...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGCTCCTTCTTGAGTTTTaGCTCATGCTGCCCCATCAC +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRLLLEF*LMLPHH
Trigger: GTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGAG...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGCAGGTTTCTCTGTTCTaGTTCAGATCTGACGTGGCG +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRQVSLF*FRSDVA
Trigger: CGCCACGTCAGATCTGAACAAGAACAGAGAAACCTG...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACAAAAGTCCTTCTGCTTGAGCACGTGTGGACACAACTCACACTCAGTGTGATACAAAAGTCCTTCTGCTaGAGCACGTGTGGACACAAC +
Preference number: 5 (lower is better)
Translates to: TKVLLLEHVWTQLTLSVIQKSFC*STCGHN
Trigger: GTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTG...TATCACACTGAGTGTGAGTTGTGTCCACACGTGCTCAAGCAGAAGGACTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGTTCCCACTTCCTTCCTaGAATCCACTGGGAACTCCA +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRFPLPS*NPLGTP
Trigger: TGGAGTTCCCAGTGGATTCAAGGAAGGAAGTGGGAA...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp TTACCGATAGCTGTGATGGTCAAGCTCATAAGTAGGCATCCAACCTTGTTCCCAAGTAGGCATCCAACCTaGTTCCCACTTCCTTCCTTG +
Preference number: 5 (lower is better)
Translates to: LPIAVMVKLISRHPTLFPSRHPT*FPLPSL
Trigger: CAAGGAAGGAAGTGGGAACAAGGTTGGATGCCTACT...TGGGAACAAGGTTGGATGCCTACTTATGAGCTTGACCATCACAGCTATCGGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp TGGGCAAGATGTGGACAGGGAGGTTTATGGATCAATTCCACTGATACTGTGTCGCATCACATAGTAGGGTaGGTCCTCCTTCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: WARCGQGGLWINSTDTVSHHIVG*VLLLEF
Trigger: AAACTCAAGAAGGAGGACCAACCCTACTATGTGATG...CGACACAGTATCAGTGGAATTGATCCATAAACCTCCCTGTCCACATCTTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGCCAAGGGCTCAGAATTaGCATCTCTGTGGAAAATGC +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRPRAQN*HLCGKC
Trigger: GCATTTTCCACAGAGATGCAAATTCTGAGCCCTTGG...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp GGATGTGCTGCTCACATAAGGTTCCCCAGTCTGTTTTCTAGACACAAGCATGGATGTGAACTTAAGAGCTaGCTCTTTTGTGCAGAGATT +
Preference number: 5 (lower is better)
Translates to: GCAAHIRFPSLFSRHKHGCELKS*LFCAEI
Trigger: AATCTCTGCACAAAAGAGCAAGCTCTTAAGTTCACA...TCCATGCTTGTGTCTAGAAAACAGACTGGGGAACCTTATGTGAGCAGCACATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS-3UTR CAA 90 bp ACTCACACTCAGTGTGATACCCACAGACATGTAGTTAAGGCTCAGAGATGTAGGTGTGAACTTAAGAGCTaGCTCTTTTGTGCAGAGATT +
Preference number: 5 (lower is better)
Translates to: THTQCDTHRHVVKAQRCRCELKS*LFCAEI
Trigger: AATCTCTGCACAAAAGAGCAAGCTCTTAAGTTCACA...CCTACATCTCTGAGCCTTAACTACATGTCTGTGGGTATCACACTGAGTGTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338482.5
ENST00000539698.4
CDS CAA 72 bp GGAGCGGCAGGCCTTCTCCACCACCTCAAAGGGCTGTaGACTGCACAGGAGCCTGCAGTGAGCCCGGGGGAT +
Preference number: 6 (lower is better)
Translates to: GAAGLLHHLKGL*TAQEPAVSPGD
Trigger: ATCCCCCGGGCTCACTGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGTGGTGGAGAAGGCCTGCCGCTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS TCA 72 bp GCAGGTGCAGAACACAGGGCCCGGCTGTTCTCCCACTaGAAGAGGCTGGACTGTCTCCGGGGACCAGGTTCC +
Preference number: 6 (lower is better)
Translates to: AGAEHRARLFSH*KRLDCLRGPGS
Trigger: GGAACCTGGTCCCCGGAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCGGGCCCTGTGTTCTGCACCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp AACACAGGGCCCGGCTGTTCTCCCACTGAAAGAGGCTaGACTGTCTCCGGGGACCAGGTTCCATGTAGGCAT +
Preference number: 6 (lower is better)
Translates to: NTGPGCSPTERG*TVSGDQVPCRH
Trigger: ATGCCTACATGGAACCTGGTCCCCGGAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCGGGCCCTGTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp GAGCCTGCAGTGAGCCCGGGGGATGATTTCATCTTGTaGGATGATGTCACAGGCAGGTGCAGAACACAGGGC +
Preference number: 6 (lower is better)
Translates to: EPAVSPGDDFIL*DDVTGRCRTQG
Trigger: GCCCTGTGTTCTGCACCTGCCTGTGACATCATCCCACAAGATGAAATCATCCCCCGGGCTCACTGCAGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS TCA 72 bp TGTGGAAAGCGTGGTCACCCATGCCCTTGCCTCGGGTaGTGTTATGCACCCAGGTCTGAAGATGGGGCAAGA +
Preference number: 6 (lower is better)
Translates to: CGKRGHPCPCLG*CYAPRSEDGAR
Trigger: TCTTGCCCCATCTTCAGACCTGGGTGCATAACATCACCCGAGGCAAGGGCATGGGTGACCACGCTTTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS GCA 72 bp GGAAGACAGAACCAGCACGTGCATGCGCTCGGGCTGTaGCTTCATAGACAGGGAGCTGATGTTGTGGCTGTA +
Preference number: 6 (lower is better)
Translates to: GRQNQHVHALGL*LHRQGADVVAV
Trigger: TACAGCCACAACATCAGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATGCACGTGCTGGTTCTGTCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp CATAGCGCACAAGCAGGTAGCGTTCCTGCAGGGCCTTaGGCAAGGACTGGATGGTCTTGTAGATCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: HSAQAGSVPAGP*ARTGWSCRSPA
Trigger: AGCTGGAGATCTACAAGACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAACGCTACCTGCTTGTGCGCTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 90 bp ACGTGCATGCGCTCGGGCTGTGCCTTCATAGACAGGGAGCTGATGTaGTGGCTGTACATGTGGAAGAATAGAGCCAAGATGGCCATCTGG +
Preference number: 6 (lower is better)
Translates to: TCMRSGCAFIDRELM*WLYMWKNRAKMAIW
Trigger: CCAGATGGCCATCTTGGCTCTATTCTTCCACATGTACAGCCACAACATCAGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATGCACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp ACATTAAGGGCATCCCTGGCATTTGTGTGGAAAGCGTaGTCACCCATGCCCTTGCCTCGGGTGATGTTATGC +
Preference number: 6 (lower is better)
Translates to: TLRASLAFVWKA*SPMPLPRVMLC
Trigger: GCATAACATCACCCGAGGCAAGGGCATGGGTGACCACGCTTTCCACACAAATGCCAGGGATGCCCTTAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 90 bp GGCCTTGGGCAAGGACTGGATGGTCTTGTAGATCTCCAGCTGGCTTaGGCAGATGACCTGCATCACATAGTAGGGTTGGTCCTCCTTCTT +
Preference number: 6 (lower is better)
Translates to: GLGQGLDGLVDLQLA*ADDLHHIVGLVLLL
Trigger: AAGAAGGAGGACCAACCCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATCTACAAGACCATCCAGTCCTTGCCCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS TCA 72 bp TCCCCCAGACTGGAGGCATCCTGGCATGTTGACTACTaGAAGGCAACTGTGAAGGTCAACTCCCTTGGAAGA +
Preference number: 6 (lower is better)
Translates to: SPRLEASWHVDY*KATVKVNSLGR
Trigger: TCTTCCAAGGGAGTTGACCTTCACAGTTGCCTTTCAGTAGTCAACATGCCAGGATGCCTCCAGTCTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS TCA 72 bp GCTCATGCTGCCCCATCACAATGCGACTGTCAATCATaGGATCTCCCTTTGTGCGTTCTCGGGAACGGAACA +
Preference number: 6 (lower is better)
Translates to: AHAAPSQCDCQS*DLPLCVLGNGT
Trigger: TGTTCCGTTCCCGAGAACGCACAAAGGGAGATCTCATGATTGACAGTCGCATTGTGATGGGGCAGCATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 72 bp GGTGGCAGCAAAGCCTTCTCAACCCTCTTAGTGGATTaGCTCAGGGACAGTCCAGGTAGACAGAAGATCCAG +
Preference number: 6 (lower is better)
Translates to: GGSKAFSTLLVD*LRDSPGRQKIQ
Trigger: CTGGATCTTCTGTCTACCTGGACTGTCCCTGAGCAAATCCACTAAGAGGGTTGAGAAGGCTTTGCTGCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS TCA 72 bp AGCATTTTCCCCCAGACTGGAGGCATCCTGGCATGTTaGCTACTGAAAGGCAACTGTGAAGGTCAACTCCCT +
Preference number: 6 (lower is better)
Translates to: SIFPQTGGILAC*LLKGNCEGQLP
Trigger: AGGGAGTTGACCTTCACAGTTGCCTTTCAGTAGTCAACATGCCAGGATGCCTCCAGTCTGGGGGAAAATGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS TCA 72 bp CATTGTGCTGAAGTGGAAGACCTTGCAAGACGGGCTTaGGAAAGCACTCGCTCCCAGGAAGCTGTGAAAGTA +
Preference number: 6 (lower is better)
Translates to: HCAEVEDLARRA*ESTRSQEAVKV
Trigger: TACTTTCACAGCTTCCTGGGAGCGAGTGCTTTCTCAAGCCCGTCTTGCAAGGTCTTCCACTTCAGCACAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS TCA 72 bp GATCCAGCAACAGGTTTCTCTGTTCTTGTTCAGATCTaGCGTGGCGGTAGCCCAGCAAATTCATGGCATCGC +
Preference number: 6 (lower is better)
Translates to: DPATGFSVLVQI*RGGSPANSWHR
Trigger: GCGATGCCATGAATTTGCTGGGCTACCGCCACGTCAGATCTGAACAAGAACAGAGAAACCTGTTGCTGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 72 bp CAAGGACTGGATGGTCTTGTAGATCTCCAGCTGGCTTaGGCAGATGACCTGCATCACATAGTAGGGTTGGTC +
Preference number: 6 (lower is better)
Translates to: QGLDGLVDLQLA*ADDLHHIVGLV
Trigger: GACCAACCCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATCTACAAGACCATCCAGTCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 90 bp GATCTCCAGCTGGCTTTGGCAGATGACCTGCATCACATAGTAGGGTaGGTCCTCCTTCTTGAGTTTTTGCTCATGCTGCCCCATCACAAT +
Preference number: 6 (lower is better)
Translates to: DLQLALADDLHHIVG*VLLLEFLLMLPHHN
Trigger: ATTGTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGAGGACCAACCCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp AAGAGAGAGAGAGCAGGCAGGGAGTTGTGTGAGCTTTaGGATGATCTTTGCCGATTTCCATCAGCTAAGTCC +
Preference number: 6 (lower is better)
Translates to: KRERAGRELCEL*DDLCRFPSAKS
Trigger: GGACTTAGCTGATGGAAATCGGCAAAGATCATCCCAAAGCTCACACAACTCCCTGCCTGCTCTCTCTCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS CCA 72 bp TGGGAGAAGCAAATGAGGAAGCATTTTCCCCCAGACTaGAGGCATCCTGGCATGTTGACTACTGAAAGGCAA +
Preference number: 6 (lower is better)
Translates to: WEKQMRKHFPPD*RHPGMLTTERQ
Trigger: TTGCCTTTCAGTAGTCAACATGCCAGGATGCCTCCAGTCTGGGGGAAAATGCTTCCTCATTTGCTTCTCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338482.5
CDS CCA 72 bp TTCATAGACAGGGAGCTGATGTTGTGGCTGTACATGTaGAAGAATAGAGCCAAGATGGCCATCTGGGAAACC +
Preference number: 6 (lower is better)
Translates to: FIDRELMLWLYM*KNRAKMAIWET
Trigger: GGTTTCCCAGATGGCCATCTTGGCTCTATTCTTCCACATGTACAGCCACAACATCAGCTCCCTGTCTATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CCA 72 bp AAGCATTCAGAGAAAGTGACTGAGGCTGACACCAGGTaGCAGCAAAGCCTTCTCAACCCTCTTAGTGGATTT +
Preference number: 6 (lower is better)
Translates to: KHSEKVTEADTR*QQSLLNPLSGF
Trigger: AAATCCACTAAGAGGGTTGAGAAGGCTTTGCTGCCACCTGGTGTCAGCCTCAGTCACTTTCTCTGAATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 72 bp GGTAGACAGAAGATCCAGCAACAGGTTTCTCTGTTCTaGTTCAGATCTGACGTGGCGGTAGCCCAGCAAATT +
Preference number: 6 (lower is better)
Translates to: GRQKIQQQVSLF*FRSDVAVAQQI
Trigger: AATTTGCTGGGCTACCGCCACGTCAGATCTGAACAAGAACAGAGAAACCTGTTGCTGGATCTTCTGTCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 90 bp GATGACCTGCATCACATAGTAGGGTTGGTCCTCCTTCTTGAGTTTTaGCTCATGCTGCCCCATCACAATGCGACTGTCAATCATGAGATC +
Preference number: 6 (lower is better)
Translates to: DDLHHIVGLVLLLEF*LMLPHHNATVNHEI
Trigger: GATCTCATGATTGACAGTCGCATTGTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGAGGACCAACCCTACTATGTGATGCAGGTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1
CDS CAA 90 bp GTGCTGAAGTGGAAGACCTTTAAGGAACAAACAGAAAGGGTGGAGTaGGGCTGCTGTTTTATTGTTTGCCTTCTATTCCCCTTCTGGCCA +
Preference number: 6 (lower is better)
Translates to: VLKWKTFKEQTERVE*GCCFIVCLLFPFWP
Trigger: TGGCCAGAAGGGGAATAGAAGGCAAACAATAAAACAGCAGCCCAACTCCACCCTTTCTGTTTGTTCCTTAAAGGTCTTCCACTTCAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000572693.1
CDS CAA 72 bp CATCACATAGTAGGGTTGGTCCTCCTTCTTGAGTTTTaGCTCATGCTGCCCCATCACAATGCGACTGTCAAT +
Preference number: 6 (lower is better)
Translates to: HHIVGLVLLLEF*LMLPHHNATVN
Trigger: ATTGACAGTCGCATTGTGATGGGGCAGCATGAGCAAAAACTCAAGAAGGAGGACCAACCCTACTATGTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338482.5
ENST00000539698.4
ENST00000572693.1