Pregenerated sensors for CHP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000187446Ensembl transcript IDs: ENST00000334660.10, ENST00000560411.5, ENST00000560784.5, ENST00000560965.1, ENST00000561280.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGTTAAATATTTTGGACTaGGGCCAGGCGTGGTGGCTC | + |
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Preference number: 2 (lower is better) Translates to: FPKQGNKQASNESESQPRLNILD*GQAWWL Trigger: GAGCCACCACGCCTGGCCCCAGTCCAAAATATTTAA...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| 3UTR-3UTR GCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGTTCAACAGTCAACATTaGACTAACAAGAGGAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: FPKQGNKQASNESESQPRFNSQH*TNKRSH Trigger: GTGGCTCCTCTTGTTAGTGCAATGTTGACTGTTGAA...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| 3UTR-3UTR TCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGCTAGTGAATGGATACTaGACAGAAATATATAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: FPKQGNKQASNESESQPRLVNGY*TEIYRV Trigger: CACCCTATATATTTCTGTTCAGTATCCATTCACTAG...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| 3UTR-3UTR CAA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGCAATCTTTAAATATTTaGGACTGGGGCCAGGCGTGG | + |
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Preference number: 3 (lower is better) Translates to: FPKQGNKQASNESESQPRQSLNI*DWGQAW Trigger: CCACGCCTGGCCCCAGTCCAAAATATTTAAAGATTG...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| CDS-3UTR GCA 90 bp | AAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCTCGAGAACCCATCGCCGTaGCGGGAGCTCCTCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: KANSMLGRSVAQFQSRSLENPSP*RELLRE Trigger: CTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTC...GAGAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGGAGAACCCATCGCCGTaGCGGGAGCTCCTCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FPKQGNKQASNESESQPRENPSP*RELLRE Trigger: CTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTC...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| CDS-3UTR TCA 90 bp | TGTACATATTTAAAATGGACAGTTGGGGCCAGGCATGATGGCTCGTGCTTGTACGCCTGGCCAATATGCTaGAACCCCGTCTCTACTGTA | + |
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Preference number: 4 (lower is better) Translates to: CTYLKWTVGARHDGSCLYAWPIC*NPVSTV Trigger: TACAGTAGAGACGGGGTTTCAGCATATTGGCCAGGC...GTACAAGCACGAGCCATCATGCCTGGCCCCAACTGTCCATTTTAAATATGTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000560965.1 |
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| CDS-3UTR GCA 90 bp | TGTACATATTTAAAATGGACAGTTGGGGCCAGGCATGATGGCTCGTGCTTGTACAGGCATGATGGCTCGTaGTTGTACTCCCAGCACTTT | + |
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Preference number: 4 (lower is better) Translates to: CTYLKWTVGARHDGSCLYRHDGS*LYSQHF Trigger: AAAGTGCTGGGAGTACAAGCACGAGCCATCATGCCT...GTACAAGCACGAGCCATCATGCCTGGCCCCAACTGTCCATTTTAAATATGTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560965.1 |
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| CDS-3UTR TCA 90 bp | AGTCGAAAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCAATGGGGCGGAAATaGGCCAAAGTTCGCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: SRKANSMLGRSVAQFQSRSMGRK*AKVRMN Trigger: ATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGA...TCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTCGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR GCA 90 bp | AAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCTCCTCTCTTCCTCTAAGTaGAGTTTGTTGCTTCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KANSMLGRSVAQFQSRSLLSSSK*SLLLRL Trigger: CAGCCGAAGCAACAAACTGCACTTAGAGGAAGAGAG...GAGAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR GCA 90 bp | AAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCTCGCTTGGGAGGAGTGTTaGTCAATTTCAGTCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: KANSMLGRSVAQFQSRSLAWEEC*SISVSI Trigger: GATCGAGACTGAAATTGAGCAACACTCCTCCCAAGC...GAGAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR TCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGTCAATGGGGCGGAAATaGGCCAAAGTTCGCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: FPKQGNKQASNESESQPRSMGRK*AKVRMN Trigger: ATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGA...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| CDS-3UTR GCA 90 bp | GAAAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCGAAAAGCAAATTCCATaGTTGGGAGGAGTGTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: EKQIPCLGGVLLNFSLDLEKQIP*LGGVLL Trigger: GAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTC...GAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR TCA 90 bp | TATACAATAAGCTGTACATATTTAAAATGGACAGTTGGGGCCAGGCATGATGGCTCAATGGGGCGGAAATaGGCCAAAGTTCGCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: YTISCTYLKWTVGARHDGSMGRK*AKVRMN Trigger: ATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGA...GCCATCATGCCTGGCCCCAACTGTCCATTTTAAATATGTACAGCTTATTGTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000560965.1 |
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| CDS-3UTR TCA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGCAAGCAAGCAAGCAATaGGTCAGAAAGTCAACCAAG | + |
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Preference number: 4 (lower is better) Translates to: FPKQGNKQASNESESQPRQASKQ*VRKSTK Trigger: CTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTG...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| CDS-3UTR CCA 90 bp | TGTACATATTTAAAATGGACAGTTGGGGCCAGGCATGATGGCTCGTGCTTGTACTGTACATATTTAAAATaGACAGTTGGGGCCAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: CTYLKWTVGARHDGSCLYCTYLK*TVGARH Trigger: ATGCCTGGCCCCAACTGTCCATTTTAAATATGTACA...GTACAAGCACGAGCCATCATGCCTGGCCCCAACTGTCCATTTTAAATATGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000560965.1 |
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| CDS-3UTR CCA 90 bp | AGTCGAAAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGAAGCAAATTCCATGCTTaGGAGGAGTGTTGCTCAATT | + |
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Preference number: 4 (lower is better) Translates to: SRKANSMLGRSVAQFQSRSKFHA*EECCSI Trigger: AATTGAGCAACACTCCTCCCAAGCATGGAATTTGCT...TCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTCGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR CAA 90 bp | GAAAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCAAGCCGGTCTCCTTCTaGATCTCCTCGAGCTCTTCG | + |
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Preference number: 5 (lower is better) Translates to: EKQIPCLGGVLLNFSLDLKPVSF*ISSSSS Trigger: CGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTT...GAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR CAA 90 bp | TTTCCAAAGCAAGGAAACAAGCAAGCAAGCAATGAGTCAGAAAGTCAACCAAGGAAGCCGGTCTCCTTCTaGATCTCCTCGAGCTCTTCG | + |
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Preference number: 5 (lower is better) Translates to: FPKQGNKQASNESESQPRKPVSF*ISSSSS Trigger: CGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTT...CCTTGGTTGACTTTCTGACTCATTGCTTGCTTGCTTGTTTCCTTGCTTTGGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334660.10 |
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| CDS-3UTR CAA 90 bp | AAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCTCTGCTTGGGAGGAGTGTaGCTCAATTTCAGTCTCGAT | + |
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Preference number: 5 (lower is better) Translates to: KANSMLGRSVAQFQSRSLCLGGV*LNFSLD Trigger: ATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCA...GAGAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS-3UTR CAA 90 bp | GAAAAGCAAATTCCATGCTTGGGAGGAGTGTTGCTCAATTTCAGTCTCGATCTCAAGCAAATTCCATGCTaGGGAGGAGTGTTGCTCAAT | + |
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Preference number: 5 (lower is better) Translates to: EKQIPCLGGVLLNFSLDLKQIPC*GGVLLN Trigger: ATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTT...GAGATCGAGACTGAAATTGAGCAACACTCCTCCCAAGCATGGAATTTGCTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560784.5 |
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| CDS CAA 72 bp | AATCCTCTGGAAATCTTCCCGGAGCCGGTCTCCTTCTaGATCTCCTCGAGCTCTTCGTCCCGCAGTAACGTG | + |
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Preference number: 6 (lower is better) Translates to: NPLEIFPEPVSF*ISSSSSSRSNV Trigger: CACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTCCGGGAAGATTTCCAGAGGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560411.5 |
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| CDS CAA 72 bp | CCGTGCTTTGGGAGGTTGAAGTGGCCTAAGAATCACTaGAGGCCAGGAGTTTATGACCAGCCTCGACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: PCFGRLKWPKNH*RPGVYDQPRQN Trigger: ATTTTGTCGAGGCTGGTCATAAACTCCTGGCCTCAAGTGATTCTTAGGCCACTTCAACCTCCCAAAGCACGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561280.5 |
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