Pregenerated sensors for CHORDC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000110172Ensembl transcript IDs: ENST00000529402.1, ENST00000529726.1, ENST00000533062.5, ENST00000533724.5, ENST00000533739.1, ENST00000642790.1, ENST00000643554.1, ENST00000643642.1, ENST00000647001.1, ENST00000647443.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTTCTCTTACAGCAAGACCAACCTTGGTCAACTAGTATCCCTGTATTGATGTATCACCGGTCTGACGACTaGGGCGGCTACCGGCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: LLLQQDQPWSTSIPVLMYHRSDD*GGYRLP Trigger: CGGAAGCCGGTAGCCGCCTCAGTCGTCAGACCGGTG...ATACATCAATACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTGTAAGAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS-3UTR CCA 90 bp | CTCTTACAGCAAGACCAACCTTGGTCAACTAGTATCCCTGTATTGATGTATACGCAGCAAGACCAACCTTaGTCAACTAGTATCCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LLQQDQPWSTSIPVLMYTQQDQP*STSIPV Trigger: TACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTG...CGTATACATCAATACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTGTAAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS-3UTR TCA 90 bp | CTCTTACAGCAAGACCAACCTTGGTCAACTAGTATCCCTGTATTGATGTATACGCTAGTATCCCTGTATTaGTGTATACGCATTTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LLQQDQPWSTSIPVLMYTLVSLY*CIRILS Trigger: AGACAAAATGCGTATACATCAATACAGGGATACTAG...CGTATACATCAATACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTGTAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS-3UTR CCA 90 bp | ATACGCATTTTGTCTGAAATCTTCTGGACTGTGAAATCCAATAATCTTGGAAAGCAGCAAGACCAACCTTaGTCAACTAGTATCCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: IRILSEIFWTVKSNNLGKQQDQP*STSIPV Trigger: TACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTG...CTTTCCAAGATTATTGGATTTCACAGTCCAGAAGATTTCAGACAAAATGCGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS CCA 90 bp | TCCGCGGACACCCTCCGGCCCAAAGGGCCTCCCCTGCTGATGAGGTaGAGGGGAGGGAGGGCTGGCGGCGCGTTCCTCTTACCGTCGGAA | + |
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Preference number: 5 (lower is better) Translates to: SADTLRPKGPPLLMR*RGGRAGGAFLLPSE Trigger: TTCCGACGGTAAGAGGAACGCGCCGCCAGCCCTCCCTCCCCTCCACCTCATCAGCAGGGGAGGCCCTTTGGGCCGGAGGGTGTCCGCGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000529402.1 ENST00000647001.1 |
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| CDS GCA 90 bp | GCCTGCCACCATGTAAAACATTCCTTTATTACTCGCTCTACCTTCTaGCATGATTGTGAGGCCTCCCCAGCCATATGGAACTGTGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: ACHHVKHSFITRSTF*HDCEASPAIWNCEF Trigger: GAACTCACAGTTCCATATGGCTGGGGAGGCCTCACAATCATGGCAGAAGGTAGAGCGAGTAATAAAGGAATGTTTTACATGGTGGCAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS TCA 90 bp | ATTTTCACCTTGTTGGTTAATGGTGTCACCAATCACCCAGATGCTTaGATTCCCTTCACATCGAATCCATTAGCAAATCCTGCTAATACA | + |
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Preference number: 5 (lower is better) Translates to: IFTLLVNGVTNHPDA*IPFTSNPLANPANT Trigger: TGTATTAGCAGGATTTGCTAATGGATTCGATGTGAAGGGAATTCAAGCATCTGGGTGATTGGTGACACCATTAACCAACAAGGTGAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000529726.1 ENST00000647443.1 |
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| CDS GCA 90 bp | ACATCTGATACCTTCTCCTTGATCTTCCTCTATTACCCTACCATTTaGACTGCCTTCCCCAATCCAGTAATTACTAATTCCCTTTTATCT | + |
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Preference number: 5 (lower is better) Translates to: TSDTFSLIFLYYPTI*TAFPNPVITNSLLS Trigger: AGATAAAAGGGAATTAGTAATTACTGGATTGGGGAAGGCAGTGCAAATGGTAGGGTAATAGAGGAAGATCAAGGAGAAGGTATCAGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000529726.1 ENST00000647443.1 |
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| CDS-3UTR CAA 90 bp | CTCTTACAGCAAGACCAACCTTGGTCAACTAGTATCCCTGTATTGATGTATACGACTAGTATCCCTGTATaGATGTATACGCATTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: LLQQDQPWSTSIPVLMYTTSIPV*MYTHFV Trigger: GACAAAATGCGTATACATCAATACAGGGATACTAGT...CGTATACATCAATACAGGGATACTAGTTGACCAAGGTTGGTCTTGCTGTAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS CCA 90 bp | GGTTCAACAAAGGTACTCAATATACATGTGTGGGAATACAGAGTCTaGTTATCAGAAGGCAAGTATGAAGAATCTGTACAACTCTATTGC | + |
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Preference number: 5 (lower is better) Translates to: GSTKVLNIHVWEYRV*LSEGKYEESVQLYC Trigger: GCAATAGAGTTGTACAGATTCTTCATACTTGCCTTCTGATAACCAGACTCTGTATTCCCACACATGTATATTGAGTACCTTTGTTGAACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS CCA 90 bp | TACTCACTTCTACCAGTGGAGATAATTTATGTGGACACTGGCATATaGATCTGTAAATTCAGATACGATCGTATTGCAAGGCAATTTCAG | + |
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Preference number: 5 (lower is better) Translates to: YSLLPVEIIYVDTGI*ICKFRYDRIARQFQ Trigger: CTGAAATTGCCTTGCAATACGATCGTATCTGAATTTACAGATCCATATGCCAGTGTCCACATAAATTATCTCCACTGGTAGAAGTGAGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS TCA 90 bp | ATGGTCTCCTCTAACTATGAAGATGGAGAGAGAATAAAATCATCCTaGGTAGTTTCCTTAGCAATAATCTGTACTCAGAGTGCTAATGAA | + |
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Preference number: 5 (lower is better) Translates to: MVSSNYEDGERIKSS*VVSLAIICTQSANE Trigger: TTCATTAGCACTCTGAGTACAGATTATTGCTAAGGAAACTACTCAGGATGATTTTATTCTCTCTCCATCTTCATAGTTAGAGGAGACCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS-3UTR CAA 90 bp | ATACGCATTTTGTCTGAAATCTTCTGGACTGTGAAATCCAATAATCTTGGAAAGACTAGTATCCCTGTATaGATGTATACGCATTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: IRILSEIFWTVKSNNLGKTSIPV*MYTHFV Trigger: GACAAAATGCGTATACATCAATACAGGGATACTAGT...CTTTCCAAGATTATTGGATTTCACAGTCCAGAAGATTTCAGACAAAATGCGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533062.5 ENST00000643554.1 |
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| CDS CCA 72 bp | GCCTCCCCTGCTGATGAGGTGGAGGGGAGGGAGGGCTaGCGGCGCGTTCCTCTTACCGTCGGAATTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: ASPADEVEGREG*RRVPLTVGIGL Trigger: GAGACCAATTCCGACGGTAAGAGGAACGCGCCGCCAGCCCTCCCTCCCCTCCACCTCATCAGCAGGGGAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000529402.1 ENST00000647001.1 |
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| CDS CCA 72 bp | GGAGTGCGGGGACGACGGGGGAAACACGTGGATCCATaGGAGCGTCTCTCTCCGCAGTGGCAGAGGACAGTC | + |
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Preference number: 6 (lower is better) Translates to: GVRGRRGKHVDP*ERLSPQWQRTV Trigger: GACTGTCCTCTGCCACTGCGGAGAGAGACGCTCCCATGGATCCACGTGTTTCCCCCGTCGTCCCCGCACTCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000529402.1 ENST00000647001.1 |
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| CDS CCA 72 bp | TCCACATGGTGTGTGACAGACCTAGTGGGAGGTAACTaGATCATGGGGATGCCTTTTTCCCATGCTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: STWCVTDLVGGN*IMGMPFSHAVL Trigger: GAGAACAGCATGGGAAAAAGGCATCCCCATGATCCAGTTACCTCCCACTAGGTCTGTCACACACCATGTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS CCA 72 bp | TCTCAACTGCAGGATGCGGAAAAGTATGGGTCGTCTTaGGATAATGTTGTCTTAGTGCCCCAGGGCCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: SQLQDAEKYGSS*DNVVLVPQGPK Trigger: TTTTGGGCCCTGGGGCACTAAGACAACATTATCCCAAGACGACCCATACTTTTCCGCATCCTGCAGTTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000529726.1 ENST00000647443.1 |
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| CDS GCA 72 bp | CATGTAAAACATTCCTTTATTACTCGCTCTACCTTCTaGCATGATTGTGAGGCCTCCCCAGCCATATGGAAC | + |
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Preference number: 6 (lower is better) Translates to: HVKHSFITRSTF*HDCEASPAIWN Trigger: GTTCCATATGGCTGGGGAGGCCTCACAATCATGGCAGAAGGTAGAGCGAGTAATAAAGGAATGTTTTACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS CCA 72 bp | CTACCAGTGGAGATAATTTATGTGGACACTGGCATATaGATCTGTAAATTCAGATACGATCGTATTGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: LPVEIIYVDTGI*ICKFRYDRIAR Trigger: CCTTGCAATACGATCGTATCTGAATTTACAGATCCATATGCCAGTGTCCACATAAATTATCTCCACTGGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS CAA 72 bp | GAAAAGACCTTAAGATCATCATCTACTGTCTTTTCTTaGTCTTTAGTGGAGTATACGCTTAAAGCACCTCCC | + |
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Preference number: 6 (lower is better) Translates to: EKTLRSSSTVFS*SLVEYTLKAPP Trigger: GGGAGGTGCTTTAAGCGTATACTCCACTAAAGACAAAGAAAAGACAGTAGATGATGATCTTAAGGTCTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533739.1 ENST00000642790.1 |
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| CDS TCA 72 bp | GTGACTAGGATTTGCTTATATCCCCAAATTGATATATaGCACATTTCTTCTTCTTTTGAGGACCTGGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VTRICLYPQIDI*HISSSFEDLVS Trigger: AGACACCAGGTCCTCAAAAGAAGAAGAAATGTGTCATATATCAATTTGGGGATATAAGCAAATCCTAGTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS CCA 72 bp | AAGGTACTCAATATACATGTGTGGGAATACAGAGTCTaGTTATCAGAAGGCAAGTATGAAGAATCTGTACAA | + |
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Preference number: 6 (lower is better) Translates to: KVLNIHVWEYRV*LSEGKYEESVQ Trigger: TTGTACAGATTCTTCATACTTGCCTTCTGATAACCAGACTCTGTATTCCCACACATGTATATTGAGTACCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000533724.5 ENST00000643642.1 |
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| CDS GCA 72 bp | GGTAAGCAAGAGACATTAGAGATAGGTAAAAGATTCTaGACACTTCACAAGAGGATATACAAATGGCTAATA | + |
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Preference number: 6 (lower is better) Translates to: GKQETLEIGKRF*TLHKRIYKWLI Trigger: TATTAGCCATTTGTATATCCTCTTGTGAAGTGTGCAGAATCTTTTACCTATCTCTAATGTCTCTTGCTTACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000529726.1 ENST00000647443.1 |
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| CDS TCA 72 bp | CATAATTTTCTCTATACTTGTGCTATTACTTACGCTTaGAATACCCTTTCTCTGTTTTCCCTGTCATTCACT | + |
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Preference number: 6 (lower is better) Translates to: HNFLYTCAITYA*NTLSLFSLSFT Trigger: AGTGAATGACAGGGAAAACAGAGAAAGGGTATTTCAAGCGTAAGTAATAGCACAAGTATAGAGAAAATTATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000529726.1 ENST00000647443.1 |
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