Pregenerated sensors for CHCHD4 (Homo sapiens)
Ensembl gene IDs: ENSG00000163528Ensembl transcript IDs: ENST00000295767.9, ENST00000420103.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTGGTGGTCACAGATaGATACGACACAGGCATCCAGTGGAGAAGACGGAAGGGGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: PFLSSSSVVVPGGHR*IRHRHPVEKTEGEG Trigger: TCCCTCCCCTTCCGTCTTCTCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000295767.9 |
||
| CDS TCA 90 bp | ATCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTGGTGGTCACAGATaGATACGACACAGGCATCCAGTGGAGAAGACGGAAGGGGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: IFLSSSSVVVPGGHR*IRHRHPVEKTEGEG Trigger: TCCCTCCCCTTCCGTCTTCTCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS CCA 90 bp | AGACCACAGGATCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTGGTaGTCACAGATGAATACGACACAGGCATCCAGTGGAGAAGACGGA | + |
|
Preference number: 5 (lower is better) Translates to: RPQDLPQLQLCGSTW*SQMNTTQASSGEDG Trigger: TCCGTCTTCTCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGATCCTGTGGTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS CCA 90 bp | CAGAGACCACAGGATCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTaGTGGTCACAGATGAATACGACACAGGCATCCAGTGGAGAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: QRPQDLPQLQLCGST*WSQMNTTQASSGED Trigger: GTCTTCTCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGATCCTGTGGTCTCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS TCA 72 bp | AGCTCCAGCTCTGTGGTAGTACCTGGTGGTCACAGATaGATACGACACAGGCATCCAGTGGAGAAGACGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SSSSVVVPGGHR*IRHRHPVEKTE Trigger: TTCCGTCTTCTCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000295767.9 ENST00000420103.1 |
||
| CDS CCA 72 bp | GATCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTGGTaGTCACAGATGAATACGACACAGGCATCCAGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: DLPQLQLCGSTW*SQMNTTQASSG Trigger: TCCACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGATC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS CCA 72 bp | CAGGATCTTCCTCAGCTCCAGCTCTGTGGTAGTACCTaGTGGTCACAGATGAATACGACACAGGCATCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: QDLPQLQLCGST*WSQMNTTQASS Trigger: ACTGGATGCCTGTGTCGTATTCATCTGTGACCACCAGGTACTACCACAGAGCTGGAGCTGAGGAAGATCCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS GCA 72 bp | TCGATCCTTCCATGTGCCTTCCTGGACATTTTCCCTTaGAGCACAGTTCACACTGGATCGAAAGTAGAACAG | + |
|
Preference number: 6 (lower is better) Translates to: SILPCAFLDIFP*STVHTGSKVEQ Trigger: CTGTTCTACTTTCGATCCAGTGTGAACTGTGCTGCAAGGGAAAATGTCCAGGAAGGCACATGGAAGGATCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS CAA 72 bp | TTCGATCCTTCCATGTGCCTTCCTGGACATTTTCCCTaGCAGCACAGTTCACACTGGATCGAAAGTAGAACA | + |
|
Preference number: 6 (lower is better) Translates to: FDPSMCLPGHFP*QHSSHWIESRT Trigger: TGTTCTACTTTCGATCCAGTGTGAACTGTGCTGCAAGGGAAAATGTCCAGGAAGGCACATGGAAGGATCGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS CCA 72 bp | CTTCCTGGACATTTTCCCTTGCAGCACAGTTCACACTaGATCGAAAGTAGAACAGTAACAGCTGTATCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: LPGHFPLQHSSH*IESRTVTAVSF Trigger: AAAAGATACAGCTGTTACTGTTCTACTTTCGATCCAGTGTGAACTGTGCTGCAAGGGAAAATGTCCAGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||
| CDS TCA 72 bp | CATTTTTGTCCCATGCAATGTGTTTTATTACATCTGTaGGTTCACTGGTGGGTATTACTTTATCTCCATTTT | + |
|
Preference number: 6 (lower is better) Translates to: HFCPMQCVLLHL*VHWWVLLYLHF Trigger: AAAATGGAGATAAAGTAATACCCACCAGTGAACTCACAGATGTAATAAAACACATTGCATGGGACAAAAATG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420103.1 |
||