Pregenerated sensors for CHCHD10 (Homo sapiens)
Ensembl gene IDs: ENSG00000250479, ENSG00000273607Ensembl transcript IDs: ENST00000523865.1, ENST00000626885.1, ENST00000629095.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCTGTCTGTCCCCTCCCTCCAGACAGGGTCTGCTGACCACCGCGTaGCCTGGGAGTCTCCGGTGGCCTAGGGAAGTGAAGCGCGGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: GCLSPPSRQGLLTTA*PGSLRWPREVKRGP Trigger: AGGGCCGCGCTTCACTTCCCTAGGCCACCGGAGACTCCCAGGCCACGCGGTGGTCAGCAGACCCTGTCTGGAGGGAGGGGACAGACAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS CCA 90 bp | CTCCGGGTCTCGGCTGGAAATGGGACCCTGCTCCCTCCCTGCGCCTaGCAGGCTGTGCGGGTTCTGGGGACAGGGGCCAGTGTCGCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LRVSAGNGTLLPPCA*QAVRVLGTGASVAK Trigger: CTTTGCGACACTGGCCCCTGTCCCCAGAACCCGCACAGCCTGCCAGGCGCAGGGAGGGAGCAGGGTCCCATTTCCAGCCGAGACCCGGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS CCA 90 bp | TCCCGTCCTCCGGACATCTCCCTTCCAGCAGCTCCGGGTCTCGGCTaGAAATGGGACCCTGCTCCCTCCCTGCGCCTGGCAGGCTGTGCG | + |
|
Preference number: 5 (lower is better) Translates to: SRPPDISLPAAPGLG*KWDPAPSLRLAGCA Trigger: CGCACAGCCTGCCAGGCGCAGGGAGGGAGCAGGGTCCCATTTCCAGCCGAGACCCGGAGCTGCTGGAAGGGAGATGTCCGGAGGACGGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS GCA 90 bp | CATCTCCCTTCCAGCAGCTCCGGGTCTCGGCTGGAAATGGGACCCTaGTCCCTCCCTGCGCCTGGCAGGCTGTGCGGGTTCTGGGGACAG | + |
|
Preference number: 5 (lower is better) Translates to: HLPSSSSGSRLEMGP*SLPAPGRLCGFWGQ Trigger: CTGTCCCCAGAACCCGCACAGCCTGCCAGGCGCAGGGAGGGAGCAGGGTCCCATTTCCAGCCGAGACCCGGAGCTGCTGGAAGGGAGATG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS TCA 90 bp | CCACATCCCCAGCCTGGGTGTCCCAAGGGTCCTAGGCAGGCTGAGTaGTCCAGCAGCAGAGGCGGCTACAGACAGCATGTTTCTGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: PHPQPGCPKGPRQAE*SSSRGGYRQHVSAA Trigger: GGCAGCAGAAACATGCTGTCTGTAGCCGCCTCTGCTGCTGGATCACTCAGCCTGCCTAGGACCCTTGGGACACCCAGGCTGGGGATGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523865.1 ENST00000626885.1 |
||
| CDS CCA 72 bp | TGCTCCCTCCCTGCGCCTGGCAGGCTGTGCGGGTTCTaGGGACAGGGGCCAGTGTCGCAAAGCGCCGAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: CSLPAPGRLCGF*GQGPVSQSAEG Trigger: GCCCTCGGCGCTTTGCGACACTGGCCCCTGTCCCCAGAACCCGCACAGCCTGCCAGGCGCAGGGAGGGAGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS GCA 72 bp | TCCAGCAGCTCCGGGTCTCGGCTGGAAATGGGACCCTaGTCCCTCCCTGCGCCTGGCAGGCTGTGCGGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: SSSSGSRLEMGP*SLPAPGRLCGF Trigger: GAACCCGCACAGCCTGCCAGGCGCAGGGAGGGAGCAGGGTCCCATTTCCAGCCGAGACCCGGAGCTGCTGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS CCA 72 bp | TCCCCTCCCTCCAGACAGGGTCTGCTGACCACCGCGTaGCCTGGGAGTCTCCGGTGGCCTAGGGAAGTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SPPSRQGLLTTA*PGSLRWPREVK Trigger: CTTCACTTCCCTAGGCCACCGGAGACTCCCAGGCCACGCGGTGGTCAGCAGACCCTGTCTGGAGGGAGGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS CCA 72 bp | ATCTCCCTTCCAGCAGCTCCGGGTCTCGGCTGGAAATaGGACCCTGCTCCCTCCCTGCGCCTGGCAGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: ISLPAAPGLGWK*DPAPSLRLAGC Trigger: ACAGCCTGCCAGGCGCAGGGAGGGAGCAGGGTCCCATTTCCAGCCGAGACCCGGAGCTGCTGGAAGGGAGAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629095.1 |
||
| CDS TCA 72 bp | CAGCCTGGGTGTCCCAAGGGTCCTAGGCAGGCTGAGTaGTCCAGCAGCAGAGGCGGCTACAGACAGCATGTT | + |
|
Preference number: 6 (lower is better) Translates to: QPGCPKGPRQAE*SSSRGGYRQHV Trigger: AACATGCTGTCTGTAGCCGCCTCTGCTGCTGGATCACTCAGCCTGCCTAGGACCCTTGGGACACCCAGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523865.1 ENST00000626885.1 |
||
| CDS CCA 72 bp | TGCAAGAGGCTGCAGGATCAGCTTGGAGTTGGCACCTaGAGGTGCGTTTCAAACCTGGGGCCACCTGCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: CKRLQDQLGVGT*RCVSNLGPPAP Trigger: AGGGGCAGGTGGCCCCAGGTTTGAAACGCACCTCCAGGTGCCAACTCCAAGCTGATCCTGCAGCCTCTTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000523865.1 ENST00000626885.1 |
||
| CDS CCA 72 bp | GGTACAGTGCAAGAGGCTGCAGGATCAGCTTGGAGTTaGCACCTGGAGGTGCGTTTCAAACCTGGGGCCACC | + |
|
Preference number: 6 (lower is better) Translates to: GTVQEAAGSAWS*HLEVRFKPGAT Trigger: GGTGGCCCCAGGTTTGAAACGCACCTCCAGGTGCCAACTCCAAGCTGATCCTGCAGCCTCTTGCACTGTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523865.1 ENST00000626885.1 |
||
| CDS CAA 72 bp | GCCTGGGGGTACAGTGCAAGAGGCTGCAGGATCAGCTaGGAGTTGGCACCTGGAGGTGCGTTTCAAACCTGG | + |
|
Preference number: 6 (lower is better) Translates to: AWGYSARGCRIS*ELAPGGAFQTW Trigger: CCAGGTTTGAAACGCACCTCCAGGTGCCAACTCCAAGCTGATCCTGCAGCCTCTTGCACTGTACCCCCAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000523865.1 ENST00000626885.1 |
||