Pregenerated sensors for CHASERR (Homo sapiens)
Ensembl gene IDs: ENSG00000272888Ensembl transcript IDs: ENST00000553829.1, ENST00000554133.5, ENST00000554669.6, ENST00000554894.5, ENST00000555227.1, ENST00000555520.1, ENST00000556895.5, ENST00000557147.1, ENST00000557682.6, ENST00000610332.1, ENST00000653163.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTCCGTTGGAGAACCGGGTCCGAGCGCGGCCACCGGCACCTCCTaGTCGCCCAAACCCGAGTCCCGGGCCGGACCGCCCGCCCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: SSVGEPGPSAATGTS*SPKPESRAGPPARA Trigger: GGCTCGGGCGGGCGGTCCGGCCCGGGACTCGGGTTTGGGCGACCAGGAGGTGCCGGTGGCCGCGCTCGGACCCGGTTCTCCAACGGAGGA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553829.1 ENST00000554669.6 ENST00000554894.5 ENST00000557147.1 |
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| CDS GCA 90 bp | GGGCCTCGCGGCCGCGGCGGAACGCCTGACAGCTCGGGGTGCTGCTaGCTCTCCGGCCATCTTGTGCCGTGTGTGTGGTGTCTCTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: GPRGRGGTPDSSGCC*LSGHLVPCVWCLSP Trigger: GGGAGAGAGACACCACACACACGGCACAAGATGGCCGGAGAGGCAGCAGCACCCCGAGCTGTCAGGCGTTCCGCCGCGGCCGCGAGGCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553829.1 ENST00000557682.6 |
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| CDS GCA 90 bp | GGCGGGCCTCGCGGCCGCGGCGGAACGCCTGACAGCTCGGGGTGCTaGTGCCTCTCCGGCCATCTTGTGCCGTGTGTGTGGTGTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: GGPRGRGGTPDSSGC*CLSGHLVPCVWCLS Trigger: AGAGAGACACCACACACACGGCACAAGATGGCCGGAGAGGCAGCAGCACCCCGAGCTGTCAGGCGTTCCGCCGCGGCCGCGAGGCCCGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553829.1 ENST00000557682.6 |
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| CDS GCA 90 bp | CGTCATAAAGGTTTAATAAGCAGCAAGTACCTTCGCATGTATCACTaGAGCCGTTTCAAAATCGGCTTTGAAAGAGTTAAAAGCCAACAC | + |
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Preference number: 5 (lower is better) Translates to: RHKGLISSKYLRMYH*SRFKIGFERVKSQH Trigger: GTGTTGGCTTTTAACTCTTTCAAAGCCGATTTTGAAACGGCTGCAGTGATACATGCGAAGGTACTTGCTGCTTATTAAACCTTTATGACG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553829.1 |
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| CDS TCA 90 bp | CCTGAATGCCGAAACGTGTTATATTTTCCACTCTATCACCACCTCTaGTTAACAAAAGATAAAGAGACGTCCTCAACTTATCTTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PECRNVLYFPLYHHL*LTKDKETSSTYLSP Trigger: GGGAGAAAGATAAGTTGAGGACGTCTCTTTATCTTTTGTTAATCAGAGGTGGTGATAGAGTGGAAAATATAACACGTTTCGGCATTCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555520.1 |
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| CDS CCA 72 bp | GGAGAACCGGGTCCGAGCGCGGCCACCGGCACCTCCTaGTCGCCCAAACCCGAGTCCCGGGCCGGACCGCCC | + |
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Preference number: 6 (lower is better) Translates to: GEPGPSAATGTS*SPKPESRAGPP Trigger: GGGCGGTCCGGCCCGGGACTCGGGTTTGGGCGACCAGGAGGTGCCGGTGGCCGCGCTCGGACCCGGTTCTCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553829.1 ENST00000554669.6 ENST00000554894.5 ENST00000557147.1 |
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| CDS CCA 72 bp | AAGTCACCGGGTCCGAGCGCGGCCACCGGCACCTCCTaGTCGCCCAAACCCGAGTCCCGGGCCGGACCGCCC | + |
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Preference number: 6 (lower is better) Translates to: KSPGPSAATGTS*SPKPESRAGPP Trigger: GGGCGGTCCGGCCCGGGACTCGGGTTTGGGCGACCAGGAGGTGCCGGTGGCCGCGCTCGGACCCGGTGACTT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556895.5 ENST00000557682.6 |
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| CDS GCA 72 bp | CGCGGCCGCGGCGGAACGCCTGACAGCTCGGGGTGCTaGTGCCTCTCCGGCCATCTTGTGCCGTGTGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RGRGGTPDSSGC*CLSGHLVPCVW Trigger: CCACACACACGGCACAAGATGGCCGGAGAGGCAGCAGCACCCCGAGCTGTCAGGCGTTCCGCCGCGGCCGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553829.1 ENST00000557682.6 |
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| CDS GCA 72 bp | GGCCGCGGCGGAACGCCTGACAGCTCGGGGTGCTGCTaGCTCTCCGGCCATCTTGTGCCGTGTGTGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: GRGGTPDSSGCC*LSGHLVPCVWC Trigger: ACACCACACACACGGCACAAGATGGCCGGAGAGGCAGCAGCACCCCGAGCTGTCAGGCGTTCCGCCGCGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553829.1 ENST00000557682.6 |
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| CDS GCA 72 bp | AAGACCAACCACCTCACATCAGTCAATAACAAATGGTaGTCGTGTATTAACCATGGATGTGTATGCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: KTNHLTSVNNKW*SCINHGCVCCS Trigger: ACTGCAGCATACACATCCATGGTTAATACACGAGCACCATTTGTTATTGACTGATGTGAGGTGGTTGGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557682.6 |
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| CDS CCA 72 bp | ACAAAGACCAACCACCTCACATCAGTCAATAACAAATaGTGCTCGTGTATTAACCATGGATGTGTATGCTGC | + |
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Preference number: 6 (lower is better) Translates to: TKTNHLTSVNNK*CSCINHGCVCC Trigger: GCAGCATACACATCCATGGTTAATACACGAGCACCATTTGTTATTGACTGATGTGAGGTGGTTGGTCTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557682.6 |
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| CDS GCA 72 bp | CTGACAGAAGAAATAAATAACAATGCCCCGGGTTTTTaGAACGTAAACATCCAGGATATATCCTACGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LTEEINNNAPGF*NVNIQDISYGS Trigger: ACTCCCGTAGGATATATCCTGGATGTTTACGTTGCAAAAACCCGGGGCATTGTTATTTATTTCTTCTGTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000610332.1 ENST00000653163.1 |
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| CDS GCA 72 bp | GGTTTAATAAGCAGCAAGTACCTTCGCATGTATCACTaGAGCCGTTTCAAAATCGGCTTTGAAAGAGTTAAA | + |
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Preference number: 6 (lower is better) Translates to: GLISSKYLRMYH*SRFKIGFERVK Trigger: TTTAACTCTTTCAAAGCCGATTTTGAAACGGCTGCAGTGATACATGCGAAGGTACTTGCTGCTTATTAAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553829.1 |
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| CDS GCA 72 bp | AATTTTAATCTCTTAAGTCACCTTCGCATGTATCACTaGAGCCGTTTCAAAATCGGCGGAAAGAGGTTAAAA | + |
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Preference number: 6 (lower is better) Translates to: NFNLLSHLRMYH*SRFKIGGKRLK Trigger: TTTTAACCTCTTTCCGCCGATTTTGAAACGGCTGCAGTGATACATGCGAAGGTGACTTAAGAGATTAAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554894.5 |
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| CDS TCA 72 bp | AGAAAATATTCCACAGACAAAAATCTATGGGCAAACTaGAGAGATGGCTCATGGACACATAACCTGTATACA | + |
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Preference number: 6 (lower is better) Translates to: RKYSTDKNLWAN*RDGSWTHNLYT Trigger: TGTATACAGGTTATGTGTCCATGAGCCATCTCTTCAGTTTGCCCATAGATTTTTGTCTGTGGAATATTTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000554133.5 ENST00000555227.1 |
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| CDS GCA 72 bp | AATTTTAATCTCTTAAGTCACCTTCGCATGTATCACTaGAGCCGTTTCAAAATCGGCTTTGAAAGAGTTAAA | + |
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Preference number: 6 (lower is better) Translates to: NFNLLSHLRMYH*SRFKIGFERVK Trigger: TTTAACTCTTTCAAAGCCGATTTTGAAACGGCTGCAGTGATACATGCGAAGGTGACTTAAGAGATTAAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000554669.6 ENST00000557147.1 |
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