RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CGGBP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000163320

Ensembl transcript IDs: ENST00000309534.10, ENST00000398392.2, ENST00000462901.5, ENST00000467332.1, ENST00000474441.1, ENST00000482016.6, ENST00000675130.1

Found 287 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAAACACATATGGTTATGTTTTGCTGCTGGTCTCCTCATACATGTaGTTCATCAACGAGAGCACTACTCTAGGCATGCATTTATCATAC +
Preference number: 1 (lower is better)
Translates to: QNTYGYVLLLVSSYM*FINESTTLGMHLSY
Trigger: GTATGATAAATGCATGCCTAGAGTAGTGCTCTCGTTGATGAAGCACATGTATGAGGAGACCAGCAGCAAAACATAACCATATGTGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR CCA 90 bp CCATTAACATTCATGTGCAAATTCTTACAGGCAAAAGTTTTAACGTaGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGT +
Preference number: 1 (lower is better)
Translates to: PLTFMCKFLQAKVLT*KFQLGDLANCTYNS
Trigger: ACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTTGCACATGAATGTTAATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR GCA 90 bp CAACATCATCCAGTTTACTGCTTAGGACCACTCTCAAAGCTGATCTaGCATTACATTTTGCTATTAGTGCAAATTAATACCCAAATAATA +
Preference number: 1 (lower is better)
Translates to: QHHPVYCLGPLSKLI*HYILLLVQINTQII
Trigger: TATTATTTGGGTATTAATTTGCACTAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAGTGGTCCTAAGCAGTAAACTGGATGATGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCCTCACCCAAAGTTATaGAGGATACTGCCAGATCTC +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIPHPKL*RILPDL
Trigger: GAGATCTGGCAGTATCCTGCATAACTTTGGGTGAGG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTCCTCACCCAAAGTTATaGAGGATACTGCCAGATCTC +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLPHPKL*RILPDL
Trigger: GAGATCTGGCAGTATCCTGCATAACTTTGGGTGAGG...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGGGGAAGTATGGAATTaGAAGATAGTTAAGGTGACT +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIGEVWN*KIVKVT
Trigger: AGTCACCTTAACTATCTTTCAATTCCATACTTCCCC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGTCAAATGGCCAGTTTaGCAACCTGAATTAGAAACT +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIVKWPV*QPELET
Trigger: AGTTTCTAATTCAGGTTGTCAAACTGGCCATTTGAC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCTCACATTTTGATAAGTaGTTTATTTTGGCGGCAGGC +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDISHFDK*FILAAG
Trigger: GCCTGCCGCCAAAATAAATCACTTATCAAAATGTGA...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTGACCACTCTCAAAGCTaGTCTGCCATTACATTTTGC +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLDHSQS*SAITFC
Trigger: GCAAAATGTAATGGCAGATCAGCTTTGAGAGTGGTC...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCCTCACCCAAAGTTATaGAGGATACTGCCAGATCTC +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKPHPKL*RILPDL
Trigger: GAGATCTGGCAGTATCCTGCATAACTTTGGGTGAGG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCATATGGTTATGTTTTaGTGCTGGTCTCCTCATACA +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIHMVMF*CWSPHT
Trigger: TGTATGAGGAGACCAGCAGCAAAACATAACCATATG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCATCCCCACAACAGGATaGAAAACATTTCTAAGGAGA +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIIPTTG*KTFLRR
Trigger: TCTCCTTAGAAATGTTTTCCATCCTGTTGTGGGGAT...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGACTGTTAAGTGGTGTTaGCTGGCAGCAGCTTCAATA +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKTVKWC*LAAASI
Trigger: TATTGAAGCTGCTGCCAGGCAACACCACTTAACAGT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGTCTCCTCATACATGTaGTTCATCAACGAGAGCACT +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKVSSYM*FINEST
Trigger: AGTGCTCTCGTTGATGAAGCACATGTATGAGGAGAC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTGGGGAAGTATGGAATTaGAAGATAGTTAAGGTGACT +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLGEVWN*KIVKVT
Trigger: AGTCACCTTAACTATCTTTCAATTCCATACTTCCCC...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTTCACATTTTGATAAGTaGTTTATTTTGGCGGCAGGC +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLSHFDK*FILAAG
Trigger: GCCTGCCGCCAAAATAAATCACTTATCAAAATGTGA...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCTCTAAACCTAGGTTTTaGTTTATACCATTGGTGACT +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDISKPRF*FIPLVT
Trigger: AGTCACCAATGGTATAAAGCAAAACCTAGGTTTAGA...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGAGGGCAGTTCTTCCATaGACAAACATTTCAGGAGAA +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKRAVLP*TNISGE
Trigger: TTCTCCTGAAATGTTTGTGCATGGAAGAACTGCCCT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAGTCTCCTCATACATGTaGTTCATCAACGAGAGCACT +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKVSSYM*FINEST
Trigger: AGTGCTCTCGTTGATGAAGCACATGTATGAGGAGAC...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTATGGTTATGTTTTGCTaGTGGTCTCCTCATACATGT +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLMVMFC*WSPHTC
Trigger: ACATGTATGAGGAGACCAGCAGCAAAACATAACCAT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTCATATGGTTATGTTTTaGTGCTGGTCTCCTCATACA +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLHMVMF*CWSPHT
Trigger: TGTATGAGGAGACCAGCAGCAAAACATAACCATATG...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCTCAAAGCTGATCTaGCATTACATTTTGCTATTA +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDILSKLI*HYILLL
Trigger: TAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCATCATCCAGTTTACTaGTTAGGACCACTCTCAAAG +
Preference number: 2 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNHHPVY*LGPLSK
Trigger: CTTTGAGAGTGGTCCTAAGCAGTAAACTGGATGATG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCTTGTTATCTAACATATaGCAATCATGGTTTCAGGGA +
Preference number: 2 (lower is better)
Translates to: LLYTRSLHLQSSICLLDILLSNI*QSWFQG
Trigger: TCCCTGAAACCATGATTGGCATATGTTAGATAACAA...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCTCCAAAGCAGCATATaGCTCTTAGACATCCTCATT +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKLQSSI*LLDILI
Trigger: AATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTATCCCCACAACAGGATaGAAAACATTTCTAAGGAGA +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLIPTTG*KTFLRR
Trigger: TCTCCTTAGAAATGTTTTCCATCCTGTTGTGGGGAT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACACAGAGATCATTTCCTaGACATGGCTGATCTTTAAG +
Preference number: 2 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNTEIIS*TWLIFK
Trigger: CTTAAAGATCAGCCATGTTCAGGAAATGATCTCTGT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGCCAGTTTGACAACCTaGATTAGAAACTTAAGTCTG +
Preference number: 2 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNASLTT*IRNLSL
Trigger: CAGACTTAAGTTTCTAATTCAGGTTGTCAAACTGGC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGAGGGCAGTTCTTCCATaGACAAACATTTCAGGAGAA +
Preference number: 2 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKRAVLP*TNISGE
Trigger: TTCTCCTGAAATGTTTGTGCATGGAAGAACTGCCCT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGATGGTTATGTTTTGCTaGTGGTCTCCTCATACATGT +
Preference number: 2 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKMVMFC*WSPHTC
Trigger: ACATGTATGAGGAGACCAGCAGCAAAACATAACCAT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCATATGGTTATGTTTTaGTGCTGGTCTCCTCATACA +
Preference number: 2 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNHMVMF*CWSPHT
Trigger: TGTATGAGGAGACCAGCAGCAAAACATAACCATATG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACTCCAAAGCAGCATATaGCTCTTAGACATCCTCATT +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKLQSSI*LLDILI
Trigger: AATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAACGCAAAACACATATaGTTATGTTTTGCTGCTGGT +
Preference number: 2 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLNAKHI*LCFAAG
Trigger: ACCAGCAGCAAAACATAACCATATGTGTTTTGCGTT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAATCTCCCTTCCTTTTTaGAGAGGATCCTCTAAAGAA +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKISLPF*RGSSKE
Trigger: TTCTTTAGAGGATCCTCTTCAAAAAGGAAGGGAGAT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAACAGAGATCATTTCCTaGACATGGCTGATCTTTAAG +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKTEIIS*TWLIFK
Trigger: CTTAAAGATCAGCCATGTTCAGGAAATGATCTCTGT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCATGTTTTCTGGTCCCTaGAAATTCAATAGGGCCAAA +
Preference number: 2 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAMFSGP*KFNRAK
Trigger: TTTGGCCCTATTGAATTTTCAGGGACCAGAAAACAT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAGGGCAGTTCTTCCATaGACAAACATTTCAGGAGAA +
Preference number: 2 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMRAVLP*TNISGE
Trigger: TTCTCCTGAAATGTTTGTGCATGGAAGAACTGCCCT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR CAA 90 bp GTTTACTGCTTAGGACCACTCTCAAAGCTGATCTGCCATTACATTTaGCTATTAGTGCAAATTAATACCCAAATAATAGGGAGCAGTTTG +
Preference number: 2 (lower is better)
Translates to: VYCLGPLSKLICHYI*LLVQINTQIIGSSL
Trigger: CAAACTGCTCCCTATTATTTGGGTATTAATTTGCACTAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAGTGGTCCTAAGCAGTAAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAAGTCTTTTGGTCACTTaGAGCTGCTACAAAATACAA +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKSLLVT*SCYKIQ
Trigger: TTGTATTTTGTAGCAGCTTCAAGTGACCAAAAGACT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGAGTCTTTTGGTCACTTaGAGCTGCTACAAAATACAA +
Preference number: 2 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKSLLVT*SCYKIQ
Trigger: TTGTATTTTGTAGCAGCTTCAAGTGACCAAAAGACT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGTCAAATGGCCAGTTTaGCAACCTGAATTAGAAACT +
Preference number: 2 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMVKWPV*QPELET
Trigger: AGTTTCTAATTCAGGTTGTCAAACTGGCCATTTGAC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAATGAAAACAAATCTCTaGAGTCAAATGGCCAGTTTG +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKMKTNL*SQMASL
Trigger: CAAACTGGCCATTTGACTTCAGAGATTTGTTTTCAT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAATTGTTATCTAACATATaGCAATCATGGTTTCAGGGA +
Preference number: 2 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKLLSNI*QSWFQG
Trigger: TCCCTGAAACCATGATTGGCATATGTTAGATAACAA...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCAACATATGCCAATCATaGTTTCAGGGATTTGTATCA +
Preference number: 2 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLANICQS*FQGFVS
Trigger: TGATACAAATCCCTGAAACCATGATTGGCATATGTT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTCTAAACCTAGGTTTTaGTTTATACCATTGGTGACT +
Preference number: 2 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMSKPRF*FIPLVT
Trigger: AGTCACCAATGGTATAAAGCAAAACCTAGGTTTAGA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR GCA 72 bp TATGGTTATGTTTTGCTGCTGGTCTCCTCATACATGTaGTTCATCAACGAGAGCACTACTCTAGGCATGCAT +
Preference number: 3 (lower is better)
Translates to: YGYVLLLVSSYM*FINESTTLGMH
Trigger: ATGCATGCCTAGAGTAGTGCTCTCGTTGATGAAGCACATGTATGAGGAGACCAGCAGCAAAACATAACCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCAATGTCCTTCAGGCTaGTTATACACCCCCACAGAA +
Preference number: 3 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKQCPSG*LYTPTE
Trigger: TTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCT +
Preference number: 3 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAHGFRD*YQFEQA
Trigger: AGCCTGCTCGAACTGATACAAATCCCTGAAACCATG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCT +
Preference number: 3 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKHGFRD*YQFEQA
Trigger: AGCCTGCTCGAACTGATACAAATCCCTGAAACCATG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACAATTCCCCTTGGCTTTaGGCATTGACGTTGAAAGAT +
Preference number: 3 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNNSPWL*ALTLKD
Trigger: ATCTTTCAACGTCAATGCCAAAAGCCAAGGGGAATT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCCTTGGCTTTTGGCATaGACGTTGAAAGATTTTAGT +
Preference number: 3 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKPWLLA*TLKDFS
Trigger: ACTAAAATCTTTCAACGTCAATGCCAAAAGCCAAGG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR GCA 72 bp CTGTACACACGTTCACTACACCTCCAAAGCAGCATATaGCTCTTAGACATCCTCATTTGTTATCTAACATAT +
Preference number: 3 (lower is better)
Translates to: LYTRSLHLQSSI*LLDILICYLTY
Trigger: ATATGTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGTACTCCACATTTATCTaGATCACAATGGTGGTAACC +
Preference number: 3 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKYSTFI*ITMVVT
Trigger: GGTTACCACCATTGTGATCAAGATAAATGTGGAGTA...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACCTTGGCTTTTGGCATaGACGTTGAAAGATTTTAGT +
Preference number: 3 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKPWLLA*TLKDFS
Trigger: ACTAAAATCTTTCAACGTCAATGCCAAAAGCCAAGG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR GCA 72 bp ATTGATGTTTTTCTAATGCAACATCATCCAGTTTACTaGTTAGGACCACTCTCAAAGCTGATCTGCCATTAC +
Preference number: 3 (lower is better)
Translates to: IDVFLMQHHPVY*LGPLSKLICHY
Trigger: GTAATGGCAGATCAGCTTTGAGAGTGGTCCTAAGCAGTAAACTGGATGATGTTGCATTAGAAAAACATCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR-3UTR CAA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTACTCCACATTTATCTaGATCACAATGGTGGTAACC +
Preference number: 3 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMYSTFI*ITMVVT
Trigger: GGTTACCACCATTGTGATCAAGATAAATGTGGAGTA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCACCTCCAAACTCAGTaGCTCGATCCAGGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIHLQTQ*LDPGES
Trigger: TGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGGTGGTCCGCCCGCTTaGCACCTCCTCCAGCTCCCC +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLGGPPA*HLLQLP
Trigger: GGGGAGCTGGAGGAGGTGCCAAGCGGGCGGACCACC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675130.1
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIAVLLH*RDAVRG
Trigger: GCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCCAGGTCCTCCTCGGTaGTCCGCCCGCTTGGCACCT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLPGPPR*SARLAP
Trigger: AGGTGCCAAGCGGGCGGACCACCGAGGAGGACCTGG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675130.1
CDS-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTCACCTCCAAACTCAGTaGCTCGATCCAGGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLHLQTQ*LDPGES
Trigger: TGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTG...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGGCACGGACTGCTGGGTaGTCAGCCTTCTCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKARTAG*SAFSSG
Trigger: CCCACTTGAGAAGGCTGATCACCCAGCAGTCCGTGC...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGCAGTTAGGGGCCTCTaGTTCTTTCTCACATTCTGC +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIAVRGL*FFLTFC
Trigger: GCAGAATGTGAGAAAGAAGCAGAGGCCCCTAACTGC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGCACGGACTGCTGGGTaGTCAGCCTTCTCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMARTAG*SAFSSG
Trigger: CCCACTTGAGAAGGCTGATCACCCAGCAGTCCGTGC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGTTTCGAGCAGGTGGTaGTGTTACTACAAATCGCTC +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIVSSRW*CYYKSL
Trigger: GAGCGATTTGTAGTAACAGCACCACCTGCTCGAAAC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNAVLLH*RDAVRG
Trigger: GCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGCACGGACTGCTGGGTaGTCAGCCTTCTCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLARTAG*SAFSSG
Trigger: CCCACTTGAGAAGGCTGATCACCCAGCAGTCCGTGC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGGTGCCAGGAAGTCATaGCTTTACGTAGGATCGAGG +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNGARKS*LYVGSR
Trigger: CCTCGATCCTACGTAAAGGCATGACTTCCTGGCACC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCACTGTTAAGTGGTGTTaGCTGGCAGCAGCTTCAATA +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDITVKWC*LAAASI
Trigger: TATTGAAGCTGCTGCCAGGCAACACCACTTAACAGT...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGTCTTTGACTTGAGGTaGTCACTAATGGCAGACTTG +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIVFDLR*SLMADL
Trigger: CAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGAC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGAAAGCACGGACTGCTaGGTGATCAGCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKESTDC*VISLLK
Trigger: CTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKAVLLH*RDAVRG
Trigger: GCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGC...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGCAGTTAGGGGCCTCTaGTTCTTTCTCACATTCTGC +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNAVRGL*FFLTFC
Trigger: GCAGAATGTGAGAAAGAAGCAGAGGCCCCTAACTGC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCCAAAGCAGCATATaGCTCTTAGACATCCTCATT +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDILQSSI*LLDILI
Trigger: AATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTACGGTTTCGAGCAGGTaGTGCTGTTACTACAAATCG +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLTVSSR*CCYYKS
Trigger: CGATTTGTAGTAACAGCACCACCTGCTCGAAACCGT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACACCTCCAAACTCAGTaGCTCGATCCAGGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLHLQTQ*LDPGES
Trigger: TGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTGCAGACTTGCGAACATaGTTCAGAACCACATTGCAA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLADLRT*FRTTLQ
Trigger: TTGCAATGTGGTTCTGAATCATGTTCGCAAGTCTGC...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCGCCAGTTTGACAACCTaGATTAGAAACTTAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIASLTT*IRNLSL
Trigger: CAGACTTAAGTTTCTAATTCAGGTTGTCAAACTGGC...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCTCACCTTGTAAGAAATaGTTACAATGTCCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDISPCKK*LQCPSG
Trigger: GCCTGAAGGACATTGTAATCATTTCTTACAAGGTGA...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCATGTTTTCTGGTCCCTaGAAATTCAATAGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIMFSGP*KFNRAK
Trigger: TTTGGCCCTATTGAATTTTCAGGGACCAGAAAACAT...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGTGGGGAAATAGTTTCTaGGCTTGCACCCGATTTTCC +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKWGNSF*ACTRFS
Trigger: GGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCA...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGACGGTTTCGAGCAGGTaGTGCTGTTACTACAAATCG +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKTVSSR*CCYYKS
Trigger: CGATTTGTAGTAACAGCACCACCTGCTCGAAACCGT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGAAAGCACGGACTGCTaGGTGATCAGCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMESTDC*VISLLK
Trigger: CTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCCTCCATTCTTCACATaGCGAGATAGGAAAGCACGG +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAPPFFT*RDRKAR
Trigger: CCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCCTCCATTCTTCACATaGCGAGATAGGAAAGCACGG +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKPPFFT*RDRKAR
Trigger: CCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACCTCCATTCTTCACATaGCGAGATAGGAAAGCACGG +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKPPFFT*RDRKAR
Trigger: CCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCTATGCCCTCCGTAGCTaGTCTGACTTAGGTATGGAG +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAYALRS*SDLGME
Trigger: CTCCATACCTAAGTCAGACCAGCTACGGAGGGCATA...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTCTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAAT +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLLGMSL*LEVVTN
Trigger: ATTAGTGACCACCTCAAGTCAAAGACTCATACCAAG...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLAVLLH*RDAVRG
Trigger: GCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR TCA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCAGTCTTTTGGTCACTTaGAGCTGCTACAAAATACAA +
Preference number: 4 (lower is better)
Translates to: LLYTRSLHLQSSICLLDISLLVT*SCYKIQ
Trigger: TTGTATTTTGTAGCAGCTTCAAGTGACCAAAAGACT...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGGTGCCAGGAAGTCATaGCTTTACGTAGGATCGAGG +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLGARKS*LYVGSR
Trigger: CCTCGATCCTACGTAAAGGCATGACTTCCTGGCACC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLARFSLW*QEVMPL
Trigger: TAAAGGCATGACTTCCTGGCACCACAGGGAAAATCG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAGTTTCGAGCAGGTGGTaGTGTTACTACAAATCGCTC +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKVSSRW*CYYKSL
Trigger: GAGCGATTTGTAGTAACAGCACCACCTGCTCGAAAC...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGGTTTCGAGCAGGTGGTaGTGTTACTACAAATCGCTC +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKVSSRW*CYYKSL
Trigger: GAGCGATTTGTAGTAACAGCACCACCTGCTCGAAAC...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTTTTGCGCAGTACTGTTaGACTGAAGAGATGCAGTTA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLFAQYC*TEEMQL
Trigger: TAACTGCATCTCTTCAGTGCAACAGTACTGCGCAAA...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGGGCAGTTCTTCCATaGACAAACATTTCAGGAGAA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLRAVLP*TNISGE
Trigger: TTCTCCTGAAATGTTTGTGCATGGAAGAACTGCCCT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCCTCACCCAAAGTTATaGAGGATACTGCCAGATCTC +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAPHPKL*RILPDL
Trigger: GAGATCTGGCAGTATCCTGCATAACTTTGGGTGAGG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGTCTCCTCATACATGTaGTTCATCAACGAGAGCACT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNVSSYM*FINEST
Trigger: AGTGCTCTCGTTGATGAAGCACATGTATGAGGAGAC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTTCAGCTTGGAGATCTTaGCAACTGTACTTACAACAG +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLSAWRS*QLYLQQ
Trigger: CTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGA...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGTGGGGAAATAGTTTCTaGGCTTGCACCCGATTTTCC +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKWGNSF*ACTRFS
Trigger: GGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCA...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGTCTTTGACTTGAGGTaGTCACTAATGGCAGACTTG +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKVFDLR*SLMADL
Trigger: CAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGAC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACTCTCAAGTGGGATGTTaGCTTCCAGGCACATTTTCA +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNSQVGC*LPGTFS
Trigger: TGAAAATGTGCCTGGAAGCCAACATCCCACTTGAGA...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGAAAGCACGGACTGCTaGGTGATCAGCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLESTDC*VISLLK
Trigger: CTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGAAAGCACGGACTGCTaGGTGATCAGCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLESTDC*VISLLK
Trigger: CTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTATGCCCTCCGTAGCTaGTCTGACTTAGGTATGGAG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMYALRS*SDLGME
Trigger: CTCCATACCTAAGTCAGACCAGCTACGGAGGGCATA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTTCATTTAACGGTAGCTaGGGTAAGTCAAACCACAGA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLSFNGS*GKSNHR
Trigger: TCTGTGGTTTGACTTACCCCAGCTACCGTTAAATGA...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCTGGGGCCATACCTTTaGGCTCTTACAATAACCAAG +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKLGPYL*ALTITK
Trigger: CTTGGTTATTGTAAGAGCCCAAAGGTATGGCCCCAG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAAT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNLGMSL*LEVVTN
Trigger: ATTAGTGACCACCTCAAGTCAAAGACTCATACCAAG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTATCTCCCTTCCTTTTTaGAGAGGATCCTCTAAAGAA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLISLPF*RGSSKE
Trigger: TTCTTTAGAGGATCCTCTTCAAAAAGGAAGGGAGAT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGGACCACTCTCAAAGCTaGTCTGCCATTACATTTTGC +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKDHSQS*SAITFC
Trigger: GCAAAATGTAATGGCAGATCAGCTTTGAGAGTGGTC...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAATAGTTTCTGGGCTTaGACCCGATTTTCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMNSFWA*TRFSLW
Trigger: CCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGTTCAACCCCGGAGATaGCTTCAAATCAGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKVQPRR*LQISFS
Trigger: TGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAAC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCTTTCCTCCATCTTCATaGAGCTCACCTCCAAACTCA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAFPPSS*SSPPNS
Trigger: TGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAA...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCTGCTCTTCAAATTCTaGCTTCCTCTTGGTATGAGT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNLLFKF*LPLGMS
Trigger: ACTCATACCAAGAGGAAGGCAGAATTTGAAGAGCAG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGCAGTTAGGGGCCTCTaGTTCTTTCTCACATTCTGC +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLAVRGL*FFLTFC
Trigger: GCAGAATGTGAGAAAGAAGCAGAGGCCCCTAACTGC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACTTTGCGCAGTACTGTTaGACTGAAGAGATGCAGTTA +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNFAQYC*TEEMQL
Trigger: TAACTGCATCTCTTCAGTGCAACAGTACTGCGCAAA...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCGTCTCCTCATACATGTaGTTCATCAACGAGAGCACT +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAVSSYM*FINEST
Trigger: AGTGCTCTCGTTGATGAAGCACATGTATGAGGAGAC...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGGTGCCAGGAAGTCATaGCTTTACCTAACACTTCCC +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLGARKS*LYLTLP
Trigger: GGGAAGTGTTAGGTAAAGGCATGACTTCCTGGCACC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675130.1
CDS-3UTR CCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGATACTTAGCAGGGAATaGTCTCCAGAGCGAAACCAG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMILSRE*SPERNQ
Trigger: CTGGTTTCGCTCTGGAGACCATTCCCTGCTAAGTAT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCGTCTTTGACTTGAGGTaGTCACTAATGGCAGACTTG +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAVFDLR*SLMADL
Trigger: CAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGAC...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCTCTCAAGTGGGATGTTaGCTTCCAGGCACATTTTCA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLASQVGC*LPGTFS
Trigger: TGAAAATGTGCCTGGAAGCCAACATCCCACTTGAGA...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCCTCCATTCTTCACATaGCGAGATAGGAAAGCACGG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLPPFFT*RDRKAR
Trigger: CCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTATATGCCCTCCGTAGCTaGTCTGACTTAGGTATGGAG +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLYALRS*SDLGME
Trigger: CTCCATACCTAAGTCAGACCAGCTACGGAGGGCATA...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGTCATTTAACGGTAGCTaGGGTAAGTCAAACCACAGA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKSFNGS*GKSNHR
Trigger: TCTGTGGTTTGACTTACCCCAGCTACCGTTAAATGA...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGTCTTAATTGTTCCCTaGGGCCATACCTTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLVLIVP*GHTFGL
Trigger: GAGCCCAAAGGTATGGCCCCAGGGAACAATTAAGAC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGCAGACTTGCGAACATaGTTCAGAACCACATTGCAA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMADLRT*FRTTLQ
Trigger: TTGCAATGTGGTTCTGAATCATGTTCGCAAGTCTGC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAAT +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKLGMSL*LEVVTN
Trigger: ATTAGTGACCACCTCAAGTCAAAGACTCATACCAAG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGATCTCCCTTCCTTTTTaGAGAGGATCCTCTAAAGAA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKISLPF*RGSSKE
Trigger: TTCTTTAGAGGATCCTCTTCAAAAAGGAAGGGAGAT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGGGGAAGTATGGAATTaGAAGATAGTTAAGGTGACT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNGEVWN*KIVKVT
Trigger: AGTCACCTTAACTATCTTTCAATTCCATACTTCCCC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACGTCAAATGGCCAGTTTaGCAACCTGAATTAGAAACT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNVKWPV*QPELET
Trigger: AGTTTCTAATTCAGGTTGTCAAACTGGCCATTTGAC...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTATGAAAACAAATCTCTaGAGTCAAATGGCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLMKTNL*SQMASL
Trigger: CAAACTGGCCATTTGACTTCAGAGATTTGTTTTCAT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGTCACATTTTGATAAGTaGTTTATTTTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKSHFDK*FILAAG
Trigger: GCCTGCCGCCAAAATAAATCACTTATCAAAATGTGA...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACTCACCTTGTAAGAAATaGTTACAATGTCCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNSPCKK*LQCPSG
Trigger: GCCTGAAGGACATTGTAATCATTTCTTACAAGGTGA...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGATGTTTTCTGGTCCCTaGAAATTCAATAGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKMFSGP*KFNRAK
Trigger: TTTGGCCCTATTGAATTTTCAGGGACCAGAAAACAT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCAGCCTTATGGGCATTaGAACCTTTACATAATGAAC +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKQPYGH*NLYIMN
Trigger: GTTCATTATGTAAAGGTTTCAATGCCCATAAGGCTG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLRFSLW*QEVMPL
Trigger: TAAAGGCATGACTTCCTGGCACCACAGGGAAAATCG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCGTTCAACCCCGGAGATaGCTTCAAATCAGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAVQPRR*LQISFS
Trigger: TGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAAC...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGTTTCGAGCAGGTGGTaGTGTTACTACAAATCGCTC +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLVSSRW*CYYKSL
Trigger: GAGCGATTTGTAGTAACAGCACCACCTGCTCGAAAC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTTTCCTCCATCTTCATaGAGCTCACCTCCAAACTCA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMFPPSS*SSPPNS
Trigger: TGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACCACATTGCAAGAAGTaGAGAAGAGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKPHCKK*RRVFLH
Trigger: ATGGAGGAAAACTCTTCTGCACTTCTTGCAATGTGG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCCACATTGCAAGAAGTaGAGAAGAGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKPHCKK*RRVFLH
Trigger: ATGGAGGAAAACTCTTCTGCACTTCTTGCAATGTGG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGATTCAGAACCACATTaGAAGAAGTGCAGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKDSEPH*KKCRRV
Trigger: AACTCTTCTGCACTTCTTGCAATGTGGTTCTGAATC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAAGGGCAGTTCTTCCATaGACAAACATTTCAGGAGAA +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKRAVLP*TNISGE
Trigger: TTCTCCTGAAATGTTTGTGCATGGAAGAACTGCCCT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGACTGTTAAGTGGTGTTaGCTGGCAGCAGCTTCAATA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMTVKWC*LAAASI
Trigger: TATTGAAGCTGCTGCCAGGCAACACCACTTAACAGT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGTCTCCTCATACATGTaGTTCATCAACGAGAGCACT +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMVSSYM*FINEST
Trigger: AGTGCTCTCGTTGATGAAGCACATGTATGAGGAGAC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACATCATCCAGTTTACTaGTTAGGACCACTCTCAAAG +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKHHPVY*LGPLSK
Trigger: CTTTGAGAGTGGTCCTAAGCAGTAAACTGGATGATG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCATCATCCAGTTTACTaGTTAGGACCACTCTCAAAG +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKHHPVY*LGPLSK
Trigger: CTTTGAGAGTGGTCCTAAGCAGTAAACTGGATGATG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAATCAGCTTGGAGATCTTaGCAACTGTACTTACAACAG +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKSAWRS*QLYLQQ
Trigger: CTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGA...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTGGGGAAATAGTTTCTaGGCTTGCACCCGATTTTCC +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLWGNSF*ACTRFS
Trigger: GGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAATACTTAGCAGGGAATaGTCTCCAGAGCGAAACCAG +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLILSRE*SPERNQ
Trigger: CTGGTTTCGCTCTGGAGACCATTCCCTGCTAAGTAT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCACGGTTTCGAGCAGGTaGTGCTGTTACTACAAATCG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLTVSSR*CCYYKS
Trigger: CGATTTGTAGTAACAGCACCACCTGCTCGAAACCGT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNNNLVS*GVDSHS
Trigger: AGAATGAGAATCAACTCCTCAACTCACAAGATTGTT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAGGGGAAGTATGGAATTaGAAGATAGTTAAGGTGACT +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKGEVWN*KIVKVT
Trigger: AGTCACCTTAACTATCTTTCAATTCCATACTTCCCC...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCACAGAGATCATTTCCTaGACATGGCTGATCTTTAAG +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLATEIIS*TWLIFK
Trigger: CTTAAAGATCAGCCATGTTCAGGAAATGATCTCTGT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAGTCAAATGGCCAGTTTaGCAACCTGAATTAGAAACT +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKVKWPV*QPELET
Trigger: AGTTTCTAATTCAGGTTGTCAAACTGGCCATTTGAC...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACATGAAAACAAATCTCTaGAGTCAAATGGCCAGTTTG +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNMKTNL*SQMASL
Trigger: CAAACTGGCCATTTGACTTCAGAGATTTGTTTTCAT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCTCACATTTTGATAAGTaGTTTATTTTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLASHFDK*FILAAG
Trigger: GCCTGCCGCCAAAATAAATCACTTATCAAAATGTGA...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGACCACTCTCAAAGCTaGTCTGCCATTACATTTTGC +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLDHSQS*SAITFC
Trigger: GCAAAATGTAATGGCAGATCAGCTTTGAGAGTGGTC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCATTTTAATCAGTGCTaGCCAGAAGCTAAAGCAATT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNHFNQC*PEAKAI
Trigger: AATTGCTTTAGCTTCTGGTCAGCACTGATTAAAATG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCATTTTAATCAGTGCTaGCCAGAAGCTAAAGCAATT +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKHFNQC*PEAKAI
Trigger: AATTGCTTTAGCTTCTGGTCAGCACTGATTAAAATG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAAAATAGCTGGGTAACATaGACTCTCTTTCAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKNSWVT*TLFQKD
Trigger: GTCCTTTTGAAAGAGAGTTCATGTTACCCAGCTATT...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTTTCCTCCATCTTCATaGAGCTCACCTCCAAACTCA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLFPPSS*SSPPNS
Trigger: TGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGCCACATTGCAAGAAGTaGAGAAGAGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMPHCKK*RRVFLH
Trigger: ATGGAGGAAAACTCTTCTGCACTTCTTGCAATGTGG...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGCTGCTCTTCAAATTCTaGCTTCCTCTTGGTATGAGT +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMLLFKF*LPLGMS
Trigger: ACTCATACCAAGAGGAAGGCAGAATTTGAAGAGCAG...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGAGTTATGCAGGATACTaGCAGATCTCCAATACAAAA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKSYAGY*QISNTK
Trigger: TTTTGTATTGGAGATCTGGCAGTATCCTGCATAACT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGATGGTTATGTTTTGCTaGTGGTCTCCTCATACATGT +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKMVMFC*WSPHTC
Trigger: ACATGTATGAGGAGACCAGCAGCAAAACATAACCAT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACATATGGTTATGTTTTaGTGCTGGTCTCCTCATACA +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKHMVMF*CWSPHT
Trigger: TGTATGAGGAGACCAGCAGCAAAACATAACCATATG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAAAAGGACTTTAAATTaGCAACGTATCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLKRTLN*QRIRQS
Trigger: TGACTGTCTGATACGTTGGCAATTTAAAGTCCTTTT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGTCTTTGACTTGAGGTaGTCACTAATGGCAGACTTG +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLVFDLR*SLMADL
Trigger: CAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGAC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTATCTCAAGTGGGATGTTaGCTTCCAGGCACATTTTCA +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLSQVGC*LPGTFS
Trigger: TGAAAATGTGCCTGGAAGCCAACATCCCACTTGAGA...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCATCCCCACAACAGGATaGAAAACATTTCTAAGGAGA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAIPTTG*KTFLRR
Trigger: TCTCCTTAGAAATGTTTTCCATCCTGTTGTGGGGAT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAACATATGCCAATCATaGTTTCAGGGATTTGTATCA +
Preference number: 4 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLNICQS*FQGFVS
Trigger: TGATACAAATCCCTGAAACCATGATTGGCATATGTT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGGCAAAAGTTTTAACGTaGAAGTTTCAGCTTGGAGAT +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKAKVLT*KFQLGD
Trigger: ATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGC...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACCAAATGACAGCCTTATaGGCATTGAAACCTTTACAT +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNQMTAL*ALKPLH
Trigger: ATGTAAAGGTTTCAATGCCCATAAGGCTGTCATTTG...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAAT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLLGMSL*LEVVTN
Trigger: ATTAGTGACCACCTCAAGTCAAAGACTCATACCAAG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR TCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKNNLVS*GVDSHS
Trigger: AGAATGAGAATCAACTCCTCAACTCACAAGATTGTT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGACAGAGATCATTTCCTaGACATGGCTGATCTTTAAG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMTEIIS*TWLIFK
Trigger: CTTAAAGATCAGCCATGTTCAGGAAATGATCTCTGT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGGCCAGTTTGACAACCTaGATTAGAAACTTAAGTCTG +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMASLTT*IRNLSL
Trigger: CAGACTTAAGTTTCTAATTCAGGTTGTCAAACTGGC...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTCACATTTTGATAAGTaGTTTATTTTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMSHFDK*FILAAG
Trigger: GCCTGCCGCCAAAATAAATCACTTATCAAAATGTGA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGTCACCTTGTAAGAAATaGTTACAATGTCCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMSPCKK*LQCPSG
Trigger: GCCTGAAGGACATTGTAATCATTTCTTACAAGGTGA...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGATGTTTTCTGGTCCCTaGAAATTCAATAGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMMFSGP*KFNRAK
Trigger: TTTGGCCCTATTGAATTTTCAGGGACCAGAAAACAT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACATTTTAATCAGTGCTaGCCAGAAGCTAAAGCAATT +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKHFNQC*PEAKAI
Trigger: AATTGCTTTAGCTTCTGGTCAGCACTGATTAAAATG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAATAGCTGGGTAACATaGACTCTCTTTCAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMNSWVT*TLFQKD
Trigger: GTCCTTTTGAAAGAGAGTTCATGTTACCCAGCTATT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGTTCAACCCCGGAGATaGCTTCAAATCAGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLVQPRR*LQISFS
Trigger: TGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAAC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACCACATTGCAAGAAGTaGAGAAGAGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLPHCKK*RRVFLH
Trigger: ATGGAGGAAAACTCTTCTGCACTTCTTGCAATGTGG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTGCTCTTCAAATTCTaGCTTCCTCTTGGTATGAGT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLLLFKF*LPLGMS
Trigger: ACTCATACCAAGAGGAAGGCAGAATTTGAAGAGCAG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTTTGCGCAGTACTGTTaGACTGAAGAGATGCAGTTA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLFAQYC*TEEMQL
Trigger: TAACTGCATCTCTTCAGTGCAACAGTACTGCGCAAA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACTTGTTATCTAACATATaGCAATCATGGTTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNLLSNI*QSWFQG
Trigger: TCCCTGAAACCATGATTGGCATATGTTAGATAACAA...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGTTGTTATCTAACATATaGCAATCATGGTTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKLLSNI*QSWFQG
Trigger: TCCCTGAAACCATGATTGGCATATGTTAGATAACAA...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTCCAAAGCAGCATATaGCTCTTAGACATCCTCATT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLLQSSI*LLDILI
Trigger: AATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTCAGCTTGGAGATCTTaGCAACTGTACTTACAACAG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLSAWRS*QLYLQQ
Trigger: CTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACAAAAGGACTTTAAATTaGCAACGTATCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNKRTLN*QRIRQS
Trigger: TGACTGTCTGATACGTTGGCAATTTAAAGTCCTTTT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCACTTTTATGAGCACTaGACTAAATACCAAATGACA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKHFYEH*TKYQMT
Trigger: TGTCATTTGGTATTTAGTGCAGTGCTCATAAAAGTG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCAGACGCATCAAATCCTaGCACTTTCCGTTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLRRIKS*HFPFVQ
Trigger: TTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAAGACGCATCAAATCCTaGCACTTTCCGTTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLRRIKS*HFPFVQ
Trigger: TTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp ACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCTCATTTGTTATCTAACAACATATGCCAATCATaGTTTCAGGGATTTGTATCA +
Preference number: 4 (lower is better)
Translates to: TTPPKQHMPLRHPHLLSNNICQS*FQGFVS
Trigger: TGATACAAATCCCTGAAACCATGATTGGCATATGTT...GTTAGATAACAAATGAGGATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGAACATATGCCAATCATaGTTTCAGGGATTTGTATCA +
Preference number: 4 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKNICQS*FQGFVS
Trigger: TGATACAAATCCCTGAAACCATGATTGGCATATGTT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGGCAAAAGTTTTAACGTaGAAGTTTCAGCTTGGAGAT +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKAKVLT*KFQLGD
Trigger: ATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGC...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
3UTR CAA 72 bp TGTTATCTAACATATGCCAATCATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCTAAAACAATCATTCTG +
Preference number: 4 (lower is better)
Translates to: CYLTYANHGFRD*YQFEQAKTIIL
Trigger: CAGAATGATTGTTTTAGCCTGCTCGAACTGATACAAATCCCTGAAACCATGATTGGCATATGTTAGATAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMNNLVS*GVDSHS
Trigger: AGAATGAGAATCAACTCCTCAACTCACAAGATTGTT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCATCTCCCTTCCTTTTTaGAGAGGATCCTCTAAAGAA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLISLPF*RGSSKE
Trigger: TTCTTTAGAGGATCCTCTTCAAAAAGGAAGGGAGAT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGCCAGTTTGACAACCTaGATTAGAAACTTAAGTCTG +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLASLTT*IRNLSL
Trigger: CAGACTTAAGTTTCTAATTCAGGTTGTCAAACTGGC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAGATTCAGAACCACATTaGAAGAAGTGCAGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLDSEPH*KKCRRV
Trigger: AACTCTTCTGCACTTCTTGCAATGTGGTTCTGAATC...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAGTTATGCAGGATACTaGCAGATCTCCAATACAAAA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMSYAGY*QISNTK
Trigger: TTTTGTATTGGAGATCTGGCAGTATCCTGCATAACT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAATGGTTATGTTTTGCTaGTGGTCTCCTCATACATGT +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLMVMFC*WSPHTC
Trigger: ACATGTATGAGGAGACCAGCAGCAAAACATAACCAT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCTCTCAAAGCTGATCTaGCATTACATTTTGCTATTA +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLALSKLI*HYILLL
Trigger: TAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACTCTCAAAGCTGATCTaGCATTACATTTTGCTATTA +
Preference number: 4 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKLSKLI*HYILLL
Trigger: TAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGTTGTTATCTAACATATaGCAATCATGGTTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKLLSNI*QSWFQG
Trigger: TCCCTGAAACCATGATTGGCATATGTTAGATAACAA...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCATTTTCACAAAGTCCTaGATAACACTGACTTTCTCT +
Preference number: 4 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAIFTKS*ITLTFS
Trigger: AGAGAAAGTCAGTGTTATCCAGGACTTTGTGAAAAT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGAACGCAAAACACATATaGTTATGTTTTGCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMNAKHI*LCFAAG
Trigger: ACCAGCAGCAAAACATAACCATATGTGTTTTGCGTT...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAATCCCCACAACAGGATaGAAAACATTTCTAAGGAGA +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLIPTTG*KTFLRR
Trigger: TCTCCTTAGAAATGTTTTCCATCCTGTTGTGGGGAT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLNNLVS*GVDSHS
Trigger: AGAATGAGAATCAACTCCTCAACTCACAAGATTGTT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR TCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCAGTCTTTTGGTCACTTaGAGCTGCTACAAAATACAA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLSLLVT*SCYKIQ
Trigger: TTGTATTTTGTAGCAGCTTCAAGTGACCAAAAGACT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCAGTTATGCAGGATACTaGCAGATCTCCAATACAAAA +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLSYAGY*QISNTK
Trigger: TTTTGTATTGGAGATCTGGCAGTATCCTGCATAACT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGCTCTCAAAGCTGATCTaGCATTACATTTTGCTATTA +
Preference number: 4 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMLSKLI*HYILLL
Trigger: TAATAGCAAAATGTAATGGCAGATCAGCTTTGAGAG...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCGCAAAAGTTTTAACGTaGAAGTTTCAGCTTGGAGAT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLAKVLT*KFQLGD
Trigger: ATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGC...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR GCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTCTAAACCTAGGTTTTaGTTTATACCATTGGTGACT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLSKPRF*FIPLVT
Trigger: AGTCACCAATGGTATAAAGCAAAACCTAGGTTTAGA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CCA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCATTTTCACAAAGTCCTaGATAACACTGACTTTCTCT +
Preference number: 4 (lower is better)
Translates to: QHITLILHIYLDHNGGNLIFTKS*ITLTFS
Trigger: AGAGAAAGTCAGTGTTATCCAGGACTTTGTGAAAAT...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CCA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAATTTTCACAAAGTCCTaGATAACACTGACTTTCTCT +
Preference number: 4 (lower is better)
Translates to: HITLILHIYLDHNGGNLLIFTKS*ITLTFS
Trigger: AGAGAAAGTCAGTGTTATCCAGGACTTTGTGAAAAT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS GCA 90 bp TGGTGGGGAAATAGTTTCTGGGCTTGCACCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTACGTAGGATCGAGGCCGCCGTTAGG +
Preference number: 5 (lower is better)
Translates to: WWGNSFWACTRFSLW*QEVMPLRRIEAAVR
Trigger: CCTAACGGCGGCCTCGATCCTACGTAAAGGCATGACTTCCTGGCACCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000474441.1
ENST00000482016.6
CDS TCA 90 bp CCTCCATTCTTCACATGGCGAGATAGGAAAGCACGGACTGCTGGGTaGTCAGCCTTCTCAAGTGGGATGTTGGCTTCCAGGCACATTTTC +
Preference number: 5 (lower is better)
Translates to: PPFFTWRDRKARTAG*SAFSSGMLASRHIF
Trigger: GAAAATGTGCCTGGAAGCCAACATCCCACTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTCCTATCTCGCCATGTGAAGAATGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000482016.6
ENST00000675130.1
CDS TCA 90 bp GCGGATAGTCTATGTTCTCCATATAAACCCAGCACTTCCCTTAATTaGGATACGTGGGACTTCACTCCGTCCCCAGCCCGGAACCACAAG +
Preference number: 5 (lower is better)
Translates to: ADSLCSPYKPSTSLN*DTWDFTPSPARNHK
Trigger: CTTGTGGTTCCGGGCTGGGGACGGAGTGAAGTCCCACGTATCTCAATTAAGGGAAGTGCTGGGTTTATATGGAGAACATAGACTATCCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000462901.5
CDS CCA 90 bp AGCAGGGAATGGTCTCCAGAGCGAAACCAGAGACGCATCAAATCCTaGCACTTTCCGTTTGTTCAACCCCGGAGATGCCTTCAAATCAGT +
Preference number: 5 (lower is better)
Translates to: SREWSPERNQRRIKS*HFPFVQPRRCLQIS
Trigger: ACTGATTTGAAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCTCTGGTTTCGCTCTGGAGACCATTCCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACGGTGGTCCGCCCGCTaGGCACCTCCTCCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLRWSAR*APPPAP
Trigger: GGGAGCTGGAGGAGGTGCCAAGCGGGCGGACCACCG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675130.1
CDS GCA 90 bp TGGTGGGGAAATAGTTTCTGGGCTTGCACCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTATGTAATGCAGAAGCACTTGAGGCT +
Preference number: 5 (lower is better)
Translates to: WWGNSFWACTRFSLW*QEVMPLCNAEALEA
Trigger: AGCCTCAAGTGCTTCTGCATTACATAAAGGCATGACTTCCTGGCACCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATTTCCCCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462901.5
CDS GCA 90 bp AGAACCACATTGCAAGAAGTGCAGAAGAGTTTTCCTCCATCTTCATaGAGCTCACCTCCAAACTCAGTGACTCGATCCAGGGGAGTCACA +
Preference number: 5 (lower is better)
Translates to: RTTLQEVQKSFPPSS*SSPPNSVTRSRGVT
Trigger: TGTGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAAACTCTTCTGCACTTCTTGCAATGTGGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTCCTGGCACTTTCCGTTaGTTCAACCCCGGAGATGCC +
Preference number: 5 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLPGTFR*FNPGDA
Trigger: GGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGG...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS TCA 90 bp TCCTGGATAACACTGACTTTCTCTGTTTGCGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGCCTCTGCTTCTTTCTCACATTCTGC +
Preference number: 5 (lower is better)
Translates to: SWITLTFSVCAVLLH*RDAVRGLCFFLTFC
Trigger: GCAGAATGTGAGAAAGAAGCAGAGGCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGCGCAAACAGAGAAAGTCAGTGTTATCCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCCTGGGGCCATACCTTaGGGCTCTTACAATAACCAA +
Preference number: 5 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIPGAIP*GSYNNQ
Trigger: TTGGTTATTGTAAGAGCCCAAAGGTATGGCCCCAGG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR CAA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCT +
Preference number: 5 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIHGFRD*YQFEQA
Trigger: AGCCTGCTCGAACTGATACAAATCCCTGAAACCATG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS TCA 90 bp CACATTCTGCTCTTCAAATTCTGCCTTCCTCTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAATGGCAGACTTGCGAACATGATTCAG +
Preference number: 5 (lower is better)
Translates to: HILLFKFCLPLGMSL*LEVVTNGRLANMIQ
Trigger: CTGAATCATGTTCGCAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGACTCATACCAAGAGGAAGGCAGAATTTGAAGAGCAGAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACCTGGCACTTTCCGTTaGTTCAACCCCGGAGATGCC +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLPGTFR*FNPGDA
Trigger: GGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCCTGGCACTTTCCGTTaGTTCAACCCCGGAGATGCC +
Preference number: 5 (lower is better)
Translates to: QHITLILHIYLDHNGGNLPGTFR*FNPGDA
Trigger: GGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTTTCTCAAGTGGGATGTaGGCTTCCAGGCACATTTTC +
Preference number: 5 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLFSSGM*ASRHIF
Trigger: GAAAATGTGCCTGGAAGCCAACATCCCACTTGAGAA...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAGACATCCAAATGATGAACTGTTaGTGGCTTTTGTTTTGGGCC +
Preference number: 5 (lower is better)
Translates to: LLYTRSLHLQSSICLLDIQMMNC*WLLFWA
Trigger: GGCCCAAAACAAAAGCCACAAACAGTTCATCATTTG...GATGTCTAAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGACTGACTTTCTCTGTTaGCGCAGTACTGTTGCACTG +
Preference number: 5 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKTDFLC*RSTVAL
Trigger: CAGTGCAACAGTACTGCGCAAACAGAGAAAGTCAGT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS TCA 90 bp CTTGATCACAATGGTGGTAACCTCCTAGTCAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCTCATATCCATCAGGAAGATATGCCC +
Preference number: 5 (lower is better)
Translates to: LDHNGGNLLVNNLVS*GVDSHSHIHQEDMP
Trigger: GGGCATATCTTCCTGATGGATATGAGAATGAGAATCAACTCCTCAACTCACAAGATTGTTGACTAGGAGGTTACCACCATTGTGATCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGACTGACTTTCTCTGTTaGCGCAGTACTGTTGCACTG +
Preference number: 5 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKTDFLC*RSTVAL
Trigger: CAGTGCAACAGTACTGCGCAAACAGAGAAAGTCAGT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGTTCTCAAGTGGGATGTaGGCTTCCAGGCACATTTTC +
Preference number: 5 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKFSSGM*ASRHIF
Trigger: GAAAATGTGCCTGGAAGCCAACATCCCACTTGAGAA...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCAATGTCCTTCAGGCTaGTTATACACCCCCACAGAA +
Preference number: 5 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKQCPSG*LYTPTE
Trigger: TTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCAATGTCCTTCAGGCTaGTTATACACCCCCACAGAA +
Preference number: 5 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAQCPSG*LYTPTE
Trigger: TTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGCGTGGAAGTTTCAGCTaGGAGATCTTGCCAACTGTA +
Preference number: 5 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKRGSFS*EILPTV
Trigger: TACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCCGTGGAAGTTTCAGCTaGGAGATCTTGCCAACTGTA +
Preference number: 5 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLARGSFS*EILPTV
Trigger: TACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAACGTGGAAGTTTCAGCTaGGAGATCTTGCCAACTGTA +
Preference number: 5 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKRGSFS*EILPTV
Trigger: TACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGCATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCT +
Preference number: 5 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMHGFRD*YQFEQA
Trigger: AGCCTGCTCGAACTGATACAAATCCCTGAAACCATG...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp AACATGGTTGCCTGCAAATTCTTTTCTAGAGGAAGTAAACGCAAAACACATATGCAATGTCCTTCAGGCTaGTTATACACCCCCACAGAA +
Preference number: 5 (lower is better)
Translates to: NMVACKFFSRGSKRKTHMQCPSG*LYTPTE
Trigger: TTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTG...CATATGTGTTTTGCGTTTACTTCCTCTAGAAAAGAATTTGCAGGCAACCATGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp TTGAAAACTTCTGTACACACGTTCACTACACCTCCAAAGCAGCATATGCCTCTTAACTGTTTGTGGCTTTaGTTTTGGGCCATCTTAAGT +
Preference number: 5 (lower is better)
Translates to: LKTSVHTFTTPPKQHMPLNCLWL*FWAILS
Trigger: ACTTAAGATGGCCCAAAACAAAAGCCACAAACAGTT...AAGAGGCATATGCTGCTTTGGAGGTGTAGTGAACGTGTGTACAGAAGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGCAAATGATGAACTGTTaGTGGCTTTTGTTTTGGGCC +
Preference number: 5 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKQMMNC*WLLFWA
Trigger: GGCCCAAAACAAAAGCCACAAACAGTTCATCATTTG...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTTCTCAAGTGGGATGTaGGCTTCCAGGCACATTTTC +
Preference number: 5 (lower is better)
Translates to: QHITLILHIYLDHNGGNLFSSGM*ASRHIF
Trigger: GAAAATGTGCCTGGAAGCCAACATCCCACTTGAGAA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCAATTCCCCTTGGCTTTaGGCATTGACGTTGAAAGAT +
Preference number: 5 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLANSPWL*ALTLKD
Trigger: ATCTTTCAACGTCAATGCCAAAAGCCAAGGGGAATT...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp TTGTTTACCATCCATGTTAAAAACCTTGTACCACCAGAGGCAAAGCAGATAAAGAATTCCCCTTGGCTTTaGGCATTGACGTTGAAAGAT +
Preference number: 5 (lower is better)
Translates to: LFTIHVKNLVPPEAKQIKNSPWL*ALTLKD
Trigger: ATCTTTCAACGTCAATGCCAAAAGCCAAGGGGAATT...CTTTATCTGCTTTGCCTCTGGTGGTACAAGGTTTTTAACATGGATGGTAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCATGGTTTCAGGGATTaGTATCAGTTCGAGCAGGCT +
Preference number: 5 (lower is better)
Translates to: QHITLILHIYLDHNGGNLHGFRD*YQFEQA
Trigger: AGCCTGCTCGAACTGATACAAATCCCTGAAACCATG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp AAATTCTTACAGGCAAAAGTTTTAACGTGGAAGTTTCAGCTTGGAGATCTTGCCTTCAGCTTGGAGATCTaGCCAACTGTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: KFLQAKVLTWKFQLGDLAFSLEI*PTVLTT
Trigger: TGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAA...GGCAAGATCTCCAAGCTGAAACTTCCACGTTAAAACTTTTGCCTGTAAGAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGAACTGTTTGTGGCTTTaGTTTTGGGCCATCTTAAGT +
Preference number: 5 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKNCLWL*FWAILS
Trigger: ACTTAAGATGGCCCAAAACAAAAGCCACAAACAGTT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp ATGATTACAATGTCCTTCAGGCTTGTTATACACCCCCACAGAATCAAGAAGAAATACTCCACATTTATCTaGATCACAATGGTGGTAACC +
Preference number: 5 (lower is better)
Translates to: MITMSFRLVIHPHRIKKKYSTFI*ITMVVT
Trigger: GGTTACCACCATTGTGATCAAGATAAATGTGGAGTA...TTTCTTCTTGATTCTGTGGGGGTGTATAACAAGCCTGAAGGACATTGTAATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CGTGGAAGTTTCAGCTTGGAGATCTTGCCAACTGTACTTACAACAGTTTTAAAGACAGCCTTATGGGCATaGAAACCTTTACATAATGAA +
Preference number: 5 (lower is better)
Translates to: RGSFSLEILPTVLTTVLKTALWA*KPLHNE
Trigger: TTCATTATGTAAAGGTTTCAATGCCCATAAGGCTGT...CTTTAAAACTGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAAACTTCCACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTATTCAGCTTGGAGATCTaGCCAACTGTACTTACAACA +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLFSLEI*PTVLTT
Trigger: TGTTGTAAGTACAGTTGGCAAGATCTCCAAGCTGAA...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACAAATGATGAACTGTTaGTGGCTTTTGTTTTGGGCC +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLQMMNC*WLLFWA
Trigger: GGCCCAAAACAAAAGCCACAAACAGTTCATCATTTG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS TCA 90 bp GATGGAGTATTCCATGAATACATACTAGAGAATAGCTGGGTAACATaGACTCTCTTTCAAAAGGACTTTAAATTGCCAACGTATCAGACA +
Preference number: 5 (lower is better)
Translates to: DGVFHEYILENSWVT*TLFQKDFKLPTYQT
Trigger: TGTCTGATACGTTGGCAATTTAAAGTCCTTTTGAAAGAGAGTTCATGTTACCCAGCTATTCTCTAGTATGTATTCATGGAATACTCCATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS CCA 90 bp CTCTCTTTCAAAAGGACTTTAAATTGCCAACGTATCAGACAGTCATaGATCCAGAAGATTAAACATTCCACAGAAATTCTGAAAAGTACG +
Preference number: 5 (lower is better)
Translates to: LSFKRTLNCQRIRQS*IQKIKHSTEILKST
Trigger: CGTACTTTTCAGAATTTCTGTGGAATGTTTAATCTTCTGGATCCATGACTGTCTGATACGTTGGCAATTTAAAGTCCTTTTGAAAGAGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS CCA 90 bp ACACACTTTTATGAGCACTGCACTAAATACCAAATGACAGCCTTATaGGCATTGAAACCTTTACATAATGAACATATTTTGGTAGGTGAC +
Preference number: 5 (lower is better)
Translates to: THFYEHCTKYQMTAL*ALKPLHNEHILVGD
Trigger: GTCACCTACCAAAATATGTTCATTATGTAAAGGTTTCAATGCCCATAAGGCTGTCATTTGGTATTTAGTGCAGTGCTCATAAAAGTGTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000398392.2
CDS CCA 90 bp CTCTCTTTCAAAAGGACTTTAAATTGCCAACGTATCAGACAGTCATaGATCCAGAAGATTAAACATTCCACAGAAATTCGGATTAGTTTC +
Preference number: 5 (lower is better)
Translates to: LSFKRTLNCQRIRQS*IQKIKHSTEIRISF
Trigger: GAAACTAATCCGAATTTCTGTGGAATGTTTAATCTTCTGGATCCATGACTGTCTGATACGTTGGCAATTTAAAGTCCTTTTGAAAGAGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000482016.6
CDS-3UTR CAA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCTACTCCACATTTATCTaGATCACAATGGTGGTAACC +
Preference number: 5 (lower is better)
Translates to: QHITLILHIYLDHNGGNLYSTFI*ITMVVT
Trigger: GGTTACCACCATTGTGATCAAGATAAATGTGGAGTA...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
ENST00000675130.1
CDS-3UTR CAA 90 bp CAACACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCCTTGGCTTTTGGCATaGACGTTGAAAGATTTTAGT +
Preference number: 5 (lower is better)
Translates to: QHITLILHIYLDHNGGNLPWLLA*TLKDFS
Trigger: ACTAAAATCTTTCAACGTCAATGCCAAAAGCCAAGG...GAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTAAACTGTTTGTGGCTTTaGTTTTGGGCCATCTTAAGT +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLNCLWL*FWAILS
Trigger: ACTTAAGATGGCCCAAAACAAAAGCCACAAACAGTT...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000482016.6
CDS-3UTR CAA 90 bp CACATAACTTTAATACTCCACATTTATCTTGATCACAATGGTGGTAACCTCCTACAAAAGGACTTTAAATaGCCAACGTATCAGACAGTC +
Preference number: 5 (lower is better)
Translates to: HITLILHIYLDHNGGNLLQKDFK*PTYQTV
Trigger: GACTGTCTGATACGTTGGCAATTTAAAGTCCTTTTG...TAGGAGGTTACCACCATTGTGATCAAGATAAATGTGGAGTATTAAAGTTATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000398392.2
ENST00000482016.6
CDS CAA 90 bp GGAATAAGGGAGGAGGAGGATCCGTCGCTGCCGCCGTCGCCGCCGTaGCCCGATCGAGCCCCGCGGCGGCCGCCGTGTCCCCCGCCGCGC +
Preference number: 6 (lower is better)
Translates to: GIREEEDPSLPPSPP*PDRAPRRPPCPPPR
Trigger: GCGCGGCGGGGGACACGGCGGCCGCCGCGGGGCTCGATCGGGCAACGGCGGCGACGGCGGCAGCGACGGATCCTCCTCCTCCCTTATTCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309534.10
ENST00000482016.6
CDS CCA 72 bp CTTTACCTAACACTTCCCCTCCCAGGTCCTCCTCGGTaGTCCGCCCGCTTGGCACCTCCTCCAGCTCCCCAG +
Preference number: 6 (lower is better)
Translates to: LYLTLPLPGPPR*SARLAPPPAPQ
Trigger: CTGGGGAGCTGGAGGAGGTGCCAAGCGGGCGGACCACCGAGGAGGACCTGGGAGGGGAAGTGTTAGGTAAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675130.1
CDS TCA 72 bp TTCACATGGCGAGATAGGAAAGCACGGACTGCTGGGTaGTCAGCCTTCTCAAGTGGGATGTTGGCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: FTWRDRKARTAG*SAFSSGMLASR
Trigger: CCTGGAAGCCAACATCCCACTTGAGAAGGCTGATCACCCAGCAGTCCGTGCTTTCCTATCTCGCCATGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000482016.6
ENST00000675130.1
CDS GCA 72 bp AATAGTTTCTGGGCTTGCACCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTACGTAGGATCGAGGCC +
Preference number: 6 (lower is better)
Translates to: NSFWACTRFSLW*QEVMPLRRIEA
Trigger: GGCCTCGATCCTACGTAAAGGCATGACTTCCTGGCACCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309534.10
ENST00000474441.1
ENST00000482016.6
CDS CCA 72 bp TGGTCTCCAGAGCGAAACCAGAGACGCATCAAATCCTaGCACTTTCCGTTTGTTCAACCCCGGAGATGCCTT +
Preference number: 6 (lower is better)
Translates to: WSPERNQRRIKS*HFPFVQPRRCL
Trigger: AAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCTCTGGTTTCGCTCTGGAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS TCA 72 bp CTATGTTCTCCATATAAACCCAGCACTTCCCTTAATTaGGATACGTGGGACTTCACTCCGTCCCCAGCCCGG +
Preference number: 6 (lower is better)
Translates to: LCSPYKPSTSLN*DTWDFTPSPAR
Trigger: CCGGGCTGGGGACGGAGTGAAGTCCCACGTATCTCAATTAAGGGAAGTGCTGGGTTTATATGGAGAACATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000462901.5
CDS TCA 72 bp ACACTGACTTTCTCTGTTTGCGCAGTACTGTTGCACTaGAGAGATGCAGTTAGGGGCCTCTGCTTCTTTCTC +
Preference number: 6 (lower is better)
Translates to: TLTFSVCAVLLH*RDAVRGLCFFL
Trigger: GAGAAAGAAGCAGAGGCCCCTAACTGCATCTCTTCAGTGCAACAGTACTGCGCAAACAGAGAAAGTCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS GCA 72 bp TTGCAAGAAGTGCAGAAGAGTTTTCCTCCATCTTCATaGAGCTCACCTCCAAACTCAGTGACTCGATCCAGG +
Preference number: 6 (lower is better)
Translates to: LQEVQKSFPPSS*SSPPNSVTRSR
Trigger: CCTGGATCGAGTCACTGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAAACTCTTCTGCACTTCTTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS CAA 90 bp CTCCAGAGCGAAACCAGAGACGCATCAAATCCTGGCACTTTCCGTTaGTTCAACCCCGGAGATGCCTTCAAATCAGTTTTTCAACAAGTG +
Preference number: 6 (lower is better)
Translates to: LQSETRDASNPGTFR*FNPGDAFKSVFQQV
Trigger: CACTTGTTGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCTCTGGTTTCGCTCTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS GCA 72 bp AAATCCTGGCACTTTCCGTTTGTTCAACCCCGGAGATaGCTTCAAATCAGTTTTTCAACAAGTGGTGGTGGG +
Preference number: 6 (lower is better)
Translates to: KSWHFPFVQPRR*LQISFSTSGGG
Trigger: CCCACCACCACTTGTTGAAAAACTGATTTGAAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGGATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS GCA 72 bp AATAGTTTCTGGGCTTGCACCCGATTTTCCCTGTGGTaGCAGGAAGTCATGCCTTTATGTAATGCAGAAGCA +
Preference number: 6 (lower is better)
Translates to: NSFWACTRFSLW*QEVMPLCNAEA
Trigger: TGCTTCTGCATTACATAAAGGCATGACTTCCTGGCACCACAGGGAAAATCGGGTGCAAGCCCAGAAACTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000462901.5
CDS CCA 72 bp CCGGAGATGCCTTCAAATCAGTTTTTCAACAAGTGGTaGTGGGGAAATAGTTTCTGGGCTTGCACCCGATTT +
Preference number: 6 (lower is better)
Translates to: PEMPSNQFFNKW*WGNSFWACTRF
Trigger: AAATCGGGTGCAAGCCCAGAAACTATTTCCCCACCACCACTTGTTGAAAAACTGATTTGAAGGCATCTCCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS CCA 72 bp TTCTCATATCCATCAGGAAGATATGCCCTCCGTAGCTaGTCTGACTTAGGTATGGAGCCTCCATTCTTCACA +
Preference number: 6 (lower is better)
Translates to: FSYPSGRYALRS*SDLGMEPPFFT
Trigger: TGTGAAGAATGGAGGCTCCATACCTAAGTCAGACCAGCTACGGAGGGCATATCTTCCTGATGGATATGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000482016.6
ENST00000675130.1
CDS TCA 72 bp GACTTGAGGTGGTCACTAATGGCAGACTTGCGAACATaGTTCAGAACCACATTGCAAGAAGTGCAGAAGAGT +
Preference number: 6 (lower is better)
Translates to: DLRWSLMADLRT*FRTTLQEVQKS
Trigger: ACTCTTCTGCACTTCTTGCAATGTGGTTCTGAATCATGTTCGCAAGTCTGCCATTAGTGACCACCTCAAGTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS TCA 72 bp CTCTTCAAATTCTGCCTTCCTCTTGGTATGAGTCTTTaGCTTGAGGTGGTCACTAATGGCAGACTTGCGAAC +
Preference number: 6 (lower is better)
Translates to: LFKFCLPLGMSL*LEVVTNGRLAN
Trigger: GTTCGCAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGACTCATACCAAGAGGAAGGCAGAATTTGAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS CAA 72 bp GAAACCAGAGACGCATCAAATCCTGGCACTTTCCGTTaGTTCAACCCCGGAGATGCCTTCAAATCAGTTTTT +
Preference number: 6 (lower is better)
Translates to: ETRDASNPGTFR*FNPGDAFKSVF
Trigger: AAAAACTGATTTGAAGGCATCTCCGGGGTTGAACAAACGGAAAGTGCCAGGATTTGATGCGTCTCTGGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000462901.5
ENST00000474441.1
ENST00000482016.6
ENST00000675130.1
CDS TCA 72 bp ACATTCTGCTCTTCAAATTCTGCCTTCCTCTTGGTATaGGTCTTTGACTTGAGGTGGTCACTAATGGCAGAC +
Preference number: 6 (lower is better)
Translates to: TFCSSNSAFLLV*VFDLRWSLMAD
Trigger: GTCTGCCATTAGTGACCACCTCAAGTCAAAGACTCATACCAAGAGGAAGGCAGAATTTGAAGAGCAGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS GCA 72 bp ATACAAAGCAGTCTTAGAACGGTTTCGAGCAGGTGGTaGTGTTACTACAAATCGCTCCATTCTGACTCTAAA +
Preference number: 6 (lower is better)
Translates to: IQSSLRTVSSRW*CYYKSLHSDSK
Trigger: TTTAGAGTCAGAATGGAGCGATTTGTAGTAACAGCACCACCTGCTCGAAACCGTTCTAAGACTGCTTTGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000467332.1
ENST00000482016.6
ENST00000675130.1
CDS TCA 72 bp AATGGTGGTAACCTCCTAGTCAACAATCTTGTGAGTTaGGGAGTTGATTCTCATTCTCATATCCATCAGGAA +
Preference number: 6 (lower is better)
Translates to: NGGNLLVNNLVS*GVDSHSHIHQE
Trigger: TTCCTGATGGATATGAGAATGAGAATCAACTCCTCAACTCACAAGATTGTTGACTAGGAGGTTACCACCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000309534.10
ENST00000398392.2
ENST00000462901.5
ENST00000482016.6
ENST00000675130.1
CDS CAA 72 bp AGGCTCATCTTGCACAAAAGAAATGTCAGACACTCTTaGGATTTGATTCAGATGATGAAAGTAAGTCTTCTG +
Preference number: 6 (lower is better)
Translates to: RLILHKRNVRHS*DLIQMMKVSLL
Trigger: CAGAAGACTTACTTTCATCATCTGAATCAAATCCAAAGAGTGTCTGACATTTCTTTTGTGCAAGATGAGCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000462901.5
ENST00000467332.1
CDS TCA 72 bp TTCCATGAATACATACTAGAGAATAGCTGGGTAACATaGACTCTCTTTCAAAAGGACTTTAAATTGCCAACG +
Preference number: 6 (lower is better)
Translates to: FHEYILENSWVT*TLFQKDFKLPT
Trigger: CGTTGGCAATTTAAAGTCCTTTTGAAAGAGAGTTCATGTTACCCAGCTATTCTCTAGTATGTATTCATGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398392.2