RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFL2 (Homo sapiens)

Ensembl gene IDs: ENSG00000165410

Ensembl transcript IDs: ENST00000298159.11, ENST00000341223.8, ENST00000422678.2, ENST00000554470.5, ENST00000555765.5, ENST00000556161.1, ENST00000672163.1, ENST00000672517.1, ENST00000673315.1

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TATCAGTTACACATATGGTTAAGTATACGTCAGTATTCTCTGTTTTaGTTATCAGAGTTTGGCCTTACCAAAAACCATCGAAATGTCCAG +
Preference number: 1 (lower is better)
Translates to: YQLHIWLSIRQYSLF*LSEFGLTKNHRNVQ
Trigger: CTGGACATTTCGATGGTTTTTGGTAAGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATGTGTAACTGATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNALHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: LTITYIVVLAAREAYNQLLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 2 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATGGTCAGAGGACAGCTTaGGCCCAGGAGTTGGAGATC +
Preference number: 2 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNGQRTA*AQELEI
Trigger: GATCTCCAACTCCTGGGCTCAAGCTGTCCTCTGACC...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR GCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGTGTTATATCCGTGCTaGCATATCACTAAAATAGGC +
Preference number: 2 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMVLYPC*HITKIG
Trigger: GCCTATTTTAGTGATATGGCAGCACGGATATAACAC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR GCA 90 bp AGGCAACATTTACTGGGACCTGCCTGCCCACCTCTAGTAGCTTTAATACTATTCGACTGCTTACTAGCATaGCTGTTTTGCATACCAGTA +
Preference number: 2 (lower is better)
Translates to: RQHLLGPACPPLVALILFDCLLA*LFCIPV
Trigger: TACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTC...GAATAGTATTAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGTTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 2 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTGTTCTGAGCCACGACTaGCTGCTTACTAGCATGCCT +
Preference number: 2 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPVLSHD*LLTSMP
Trigger: AGGCATGCTAGTAAGCAGTCAGTCGTGGCTCAGAAC...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 2 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGTGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 2 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422678.2
ENST00000554470.5
3UTR-3UTR GCA 90 bp CTCCACCTACTATTAAATGTGCAAGCAAAAACAGGACCTATGAAGAGCAAAATGCCAGTTTGGGACACATaGCAACTGTTCCCATTTGTC +
Preference number: 2 (lower is better)
Translates to: LHLLLNVQAKTGPMKSKMPVWDT*QLFPFV
Trigger: GACAAATGGGAACAGTTGGCATGTGTCCCAAACTGG...CATTTTGCTCTTCATAGGTCCTGTTTTTGCTTGCACATTTAATAGTAGGTGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR GCA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATACATTTACTGGGACCTaGCTGCCCACCTCTAGTAGC +
Preference number: 2 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNTFTGT*LPTSSS
Trigger: GCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGT...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR CCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 2 (lower is better)
Translates to: LTITYIVVLAAREAYNQLLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCACAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 2 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTTCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 2 (lower is better)
Translates to: CCHITKIGLPRQVRCMNASLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422678.2
ENST00000554470.5
3UTR-3UTR TCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTTATGGGGTTAAGTTCTaGGCCACGACTGACTGCTTA +
Preference number: 2 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPYGVKF*ATTDCL
Trigger: TAAGCAGTCAGTCGTGGCTCAGAACTTAACCCCATA...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR GCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 2 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 2 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYILHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CCA 90 bp TTTGCCAGATTCCATAAATTAGCTGCTACAAATGTTCTGTATCAGAGAAACTCACTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: FARFHKLAATNVLYQRNSLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...TGAGTTTCTCTGATACAGAACATTTGTAGCAGCTAATTTATGGAATCTGGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR TCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 2 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR TCA 90 bp TTTGCCAGATTCCATAAATTAGCTGCTACAAATGTTCTGTATCAGAGAAACTCAGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 2 (lower is better)
Translates to: FARFHKLAATNVLYQRNSVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...TGAGTTTCTCTGATACAGAACATTTGTAGCAGCTAATTTATGGAATCTGGCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR CCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 2 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYILILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR GCA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATCTAGCATGCCTGTTTTaGATACCAGTAGAATCAAGT +
Preference number: 2 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNLACLF*IPVESS
Trigger: ACTTGATTCTACTGGTATGCAAAACAGGCATGCTAG...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR CCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTCAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 2 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CAA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: LTITYIVVLAAREAYNQLPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR TCA 72 bp GCTAAAAGCATTCCTCTGAGCTATGGGGTTAAGTTCTaGGCCACGACTGACTGCTTACTAGCATGCCTGTTT +
Preference number: 3 (lower is better)
Translates to: AKSIPLSYGVKF*ATTDCLLACLF
Trigger: AAACAGGCATGCTAGTAAGCAGTCAGTCGTGGCTCAGAACTTAACCCCATAGCTCAGAGGAATGCTTTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CAA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 3 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CAA 90 bp GCAACATTTACTGGGACCTGCCTGCCCACCTCTAGTAGCTTTAATACTATTCATACTAGCATGCCTGTTTaGCATACCAGTAGAATCAAG +
Preference number: 3 (lower is better)
Translates to: ATFTGTCLPTSSSFNTIHTSMPV*HTSRIK
Trigger: CTTGATTCTACTGGTATGCAAAACAGGCATGCTAGT...ATGAATAGTATTAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR CCA 72 bp ACCATCGAAATGTCCAGGATAACTCACAGGGACAGCTaGAAGCCTGAAATAAAATTGCTCAGTGCAAAAAGA +
Preference number: 3 (lower is better)
Translates to: TIEMSRITHRDS*KPEIKLLSAKR
Trigger: TCTTTTTGCACTGAGCAATTTTATTTCAGGCTTCCAGCTGTCCCTGTGAGTTATCCTGGACATTTCGATGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
3UTR-3UTR CAA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 3 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR-3UTR CAA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATTATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 3 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR GCA 72 bp CACATATGGTTAAGTATACGTCAGTATTCTCTGTTTTaGTTATCAGAGTTTGGCCTTACCAAAAACCATCGA +
Preference number: 3 (lower is better)
Translates to: HIWLSIRQYSLF*LSEFGLTKNHR
Trigger: TCGATGGTTTTTGGTAAGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR-3UTR CAA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 3 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATATCACGTGGGCACGCCTaGTCCCCAGCCGGCGCCACC +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYISRGHA*SPAGAT
Trigger: GGTGGCGCCGGCTGGGGACCAGGCGTGCCCACGTGA...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000554470.5
CDS-3UTR CCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCGGGCTTCGGCTCTGTaGCACTGGGAGGAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLRASAL*HWEEKE
Trigger: CTCCTTCTCCTCCCAGTGCCACAGAGCCGAAGCCCG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554470.5
CDS-3UTR TCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGTTCTGAGCCACGACTaGCTGCTTACTAGCATGCCT +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMVLSHD*LLTSMP
Trigger: AGGCATGCTAGTAAGCAGTCAGTCGTGGCTCAGAAC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGGGTCAGAGGACAGCTTaGGCCCAGGAGTTGGAGATC +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLGQRTA*AQELEI
Trigger: GATCTCCAACTCCTGGGCTCAAGCTGTCCTCTGACC...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR GCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGACATTTACTGGGACCTaGCTGCCCACCTCTAGTAGC +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMTFTGT*LPTSSS
Trigger: GCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGT...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATTTACTGGGACCTGCCTaGCCACCTCTAGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHLLGPA*PPLVAL
Trigger: TAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAA...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCTTCTTAAAGGGGTTTaGACGTGGAAGCGAAAGGGA +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMLLKGV*TWKRKG
Trigger: TCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS-3UTR TCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCATATGGGGTTAAGTTCTaGGCCACGACTGACTGCTTA +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASYGVKF*ATTDCL
Trigger: TAAGCAGTCAGTCGTGGCTCAGAACTTAACCCCATA...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTTCCTATTTCACTGGGTaGTGTCAGAGCTTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNASYFTG*CQSFRS
Trigger: ACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGA...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 4 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAAAGGGGTTTGGACGTaGAAGCGAAAGGGACAAATA +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMKGVWT*KRKGQI
Trigger: TATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTT...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCTTCTTAAAGGGGTTTaGACGTGGAAGCGAAAGGGA +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNALLKGV*TWKRKG
Trigger: TCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
3UTR CAA 72 bp GTGTTATATCCGTGCTGCCATATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCC +
Preference number: 4 (lower is better)
Translates to: VLYPCCHITKIG*PRQVRCMNAQA
Trigger: GGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATATAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGTGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCACAGGAGCCCAAGATCTaGTTTGCTTCCTCTACAATT +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASQEPKI*FASSTI
Trigger: AATTGTAGAGGAAGCAAAGCAGATCTTGGGCTCCTG...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422678.2
CDS-3UTR CCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACACTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAATTGTGTCAACTCGGCTaGCCTTGGAGGCCAAAATCA +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQLCQLG*PWRPKS
Trigger: TGATTTTGGCCTCCAAGGCCAGCCGAGTTGACACAA...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000672163.1
CDS-3UTR TCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATTGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTTGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATTCACCCACCAAGATCTaGTTTGCTTCCTCTACAATT +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHSPTKI*FASSTI
Trigger: AATTGTAGAGGAAGCAAAGCAGATCTTGGTGGGTGA...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTTTTGAGCTTTTGAAGTaGTGGCTCATGCATGCAATC +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAFELLK*WLMHAI
Trigger: GATTGCATGCATGAGCCACCACTTCAAAAGCTCAAA...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACACCTCAGACTTCTTTATaGGCTGAAAGGAGACAGAAC +
Preference number: 4 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTPQTSL*AERRQN
Trigger: GTTCTGTCTCCTTTCAGCCCATAAAGAAGTCTGAGG...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACTTCTTAAAGGGGTTTaGACGTGGAAGCGAAAGGGA +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQLLKGV*TWKRKG
Trigger: TCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTCAGAGCTTCAGGAGTaGCAGCAAAAATACCTTCTG +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLSELQE*QQKYLL
Trigger: CAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGA...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCATGTTTCCTATTTCACTaGGTGATGTCAGAGCTTCAG +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASCFLFH*VMSELQ
Trigger: CTGAAGCTCTGACATCACCCAGTGAAATAGGAAACA...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCCAGAAGCTTTAGTCTaGACATCAAAAATTGCACCG +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAPEALV*TSKIAP
Trigger: CGGTGCAATTTTTGATGTCCAGACTAAAGCTTCTGG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000673315.1
CDS-3UTR TCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTGTTCTGAGCCACGACTaGCTGCTTACTAGCATGCCT +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFVLSHD*LLTSMP
Trigger: AGGCATGCTAGTAAGCAGTCAGTCGTGGCTCAGAAC...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGTTCTGAGCCACGACTaGCTGCTTACTAGCATGCCT +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYVLSHD*LLTSMP
Trigger: AGGCATGCTAGTAAGCAGTCAGTCGTGGCTCAGAAC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACACTAAAAGCATTCCTCTaGGCTATGGGGTTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTLKAFL*AMGLSS
Trigger: AGAACTTAACCCCATAGCTCAGAGGAATGCTTTTAG...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTAGGTTGAGTTTGAAGTaGGCTGAAATTTTGACACTG +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNARLSLK*AEILTL
Trigger: CAGTGTCAAAATTTCAGCTCACTTCAAACTCAACCT...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTGTGTTATATCCGTGCTaGCATATCACTAAAATAGGC +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAVLYPC*HITKIG
Trigger: GCCTATTTTAGTGATATGGCAGCACGGATATAACAC...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCTAGCATGCCTGTTTTaGATACCAGTAGAATCAAGT +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNALACLF*IPVESS
Trigger: ACTTGATTCTACTGGTATGCAAAACAGGCATGCTAG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGGACTGCTTACTAGCATaGCTGTTTTGCATACCAGTA +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLDCLLA*LFCIPV
Trigger: TACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTC...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCAGTATTCTCTGTTTTaGTTATCAGAGTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMQYSLF*LSEFGL
Trigger: AAGGCCAAACTCTGATAAGCAAAACAGAGAATACTG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGTCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMSLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp AGGCAACATTTACTGGGACCTGCCTGCCCACCTCTAGTAGCTTTAATACTATTCGAGAGGAAATTTAAGTaGAGGGATGATTCCTCTACT +
Preference number: 4 (lower is better)
Translates to: RQHLLGPACPPLVALILFERKFK*RDDSST
Trigger: AGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTC...GAATAGTATTAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGTTGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGAAAGGGGTTTGGACGTaGAAGCGAAAGGGACAAATA +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWKGVWT*KRKGQI
Trigger: TATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTT...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTGTTTCCTATTTCACTaGGTGATGTCAGAGCTTCAG +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLCFLFH*VMSELQ
Trigger: CTGAAGCTCTGACATCACCCAGTGAAATAGGAAACA...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR TCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACTAAAAGCATTCCTCTaGGCTATGGGGTTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQLKAFL*AMGLSS
Trigger: AGAACTTAACCCCATAGCTCAGAGGAATGCTTTTAG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGGAGTTTGAAGTGAGCTaGAATTTTGACACTGCACTC +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWEFEVS*NFDTAL
Trigger: GAGTGCAGTGTCAAAATTTCAGCTCACTTCAAACTC...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCACCAAGATCTGCTTTaGTTCCTCTACAATTATTTG +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAHQDLL*FLYNYL
Trigger: CAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCTAGCATGCCTGTTTTaGATACCAGTAGAATCAAGT +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLLACLF*IPVESS
Trigger: ACTTGATTCTACTGGTATGCAAAACAGGCATGCTAG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAGACTGCTTACTAGCATaGCTGTTTTGCATACCAGTA +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQDCLLA*LFCIPV
Trigger: TACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTC...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGGACTGCTTACTAGCATaGCTGTTTTGCATACCAGTA +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWDCLLA*LFCIPV
Trigger: TACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTC...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACTGGACATCAAAAATTaGACCGTACCATGTAAGTCG +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQLDIKN*TVPCKS
Trigger: CGACTTACATGGTACGGTGCAATTTTTGATGTCCAG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000673315.1
CDS-3UTR CCA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCATCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 4 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASSLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGTTGGAAGGGCCCAGTaGAAAGGGGGAAATACAACA +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYVGRAQ*KGGNTT
Trigger: TGTTGTATTTCCCCCTTTCCACTGGGCCCTTCCAAC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCAGTTTTGCCATTTGTaGATAACTATGACAAGATAC +
Preference number: 4 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMQFCHL*ITMTRY
Trigger: GTATCTTGTCATAGTTATCCACAAATGGCAAAACTG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATATATGGGGTTAAGTTCTaGGCCACGACTGACTGCTTA +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIYGVKF*ATTDCL
Trigger: TAAGCAGTCAGTCGTGGCTCAGAACTTAACCCCATA...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATTCCTATTTCACTGGGTaGTGTCAGAGCTTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYSYFTG*CQSFRS
Trigger: ACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGA...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR TCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGAAGTTGTCCCATCCCTaGAATGTTTCCTATTTCACT +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWKLSHP*NVSYFT
Trigger: AGTGAAATAGGAAACATTTCAGGGATGGGACAACTT...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR GCA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGCACCAAGATCTGCTTTaGTTCCTCTACAATTATTTG +
Preference number: 4 (lower is better)
Translates to: LTITYIVVLAAREAYNQLHQDLL*FLYNYL
Trigger: CAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTG...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAGGTGAGGTGTATGAATaGTCAAGCCTCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIGEVYE*SSLTEL
Trigger: CAGTTCTGTGAGGCTTGAGCATTCATACACCTCACC...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAGTGTTATATCCGTGCTaGCATATCACTAAAATAGGC +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQVLYPC*HITKIG
Trigger: GCCTATTTTAGTGATATGGCAGCACGGATATAACAC...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTAATCAAGTCCAGTTTTaGCATTTGTGGATAACTATG +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNANQVQF*HLWITM
Trigger: CATAGTTATCCACAAATGGCAAAACTGGACTTGATT...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATAATCAAGTCCAGTTTTaGCATTTGTGGATAACTATG +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHNQVQF*HLWITM
Trigger: CATAGTTATCCACAAATGGCAAAACTGGACTTGATT...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACCAGTTTGGGACACATaGCAACTGTTCCCATTTGTC +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIPVWDT*QLFPFV
Trigger: GACAAATGGGAACAGTTGGCATGTGTCCCAAACTGG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR GCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCATTTCAATACACAATaGTGGCCACACTATTTTAGA +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAHFNTQ*WPHYFR
Trigger: TCTAAAATAGTGTGGCCAGCATTGTGTATTGAAATG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACATCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 4 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTSLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTCTTCATTCATTGTGTTaGAAGGGCCCAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFLHSLC*KGPVER
Trigger: CCTTTCCACTGGGCCCTTCCAACACAATGAATGAAG...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAGTTTTGCCATTTGTaGATAACTATGACAAGATAC +
Preference number: 4 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAQFCHL*ITMTRY
Trigger: GTATCTTGTCATAGTTATCCACAAATGGCAAAACTG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATCAGTTTTGCCATTTGTaGATAACTATGACAAGATAC +
Preference number: 4 (lower is better)
Translates to: TELEKWKLLKIQMALDCHQFCHL*ITMTRY
Trigger: GTATCTTGTCATAGTTATCCACAAATGGCAAAACTG...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
40% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp GCAACATTTACTGGGACCTGCCTGCCCACCTCTAGTAGCTTTAATACTATTCATAATCAAGTCCAGTTTTaGCATTTGTGGATAACTATG +
Preference number: 4 (lower is better)
Translates to: ATFTGTCLPTSSSFNTIHNQVQF*HLWITM
Trigger: CATAGTTATCCACAAATGGCAAAACTGGACTTGATT...ATGAATAGTATTAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGTCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWSLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGCAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 4 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAAAAGGGGTTTGGACGTaGAAGCGAAAGGGACAAATA +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIKGVWT*KRKGQI
Trigger: TATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTT...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTTCAGAGCTTCAGGAGTaGCAGCAAAAATACCTTCTG +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFSELQE*QQKYLL
Trigger: CAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGA...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000672517.1
3UTR CAA 72 bp TTAGATAATGATGGAAAACAACAGCTGATAGCCAGTTaGGGACACATGCCAACTGTTCCCATTTGTCTGAAA +
Preference number: 4 (lower is better)
Translates to: LDNDGKQQLIAS*GHMPTVPICLK
Trigger: TTTCAGACAAATGGGAACAGTTGGCATGTGTCCCAAACTGGCTATCAGCTGTTGTTTTCCATCATTATCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR TCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTTGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 4 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp CTCCTTAAGATCCAGATGGCACTTGACTGTCATTTTATAATGGTTTTCCTTCAATGGTTTTCCTTCAAGTaGAACTACTACATTGCCTCC +
Preference number: 4 (lower is better)
Translates to: LLKIQMALDCHFIMVFLQWFSFK*NYYIAS
Trigger: GGAGGCAATGTAGTAGTTTCACTTGAAGGAAAACCA...TTGAAGGAAAACCATTATAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422678.2
ENST00000554470.5
CDS-3UTR TCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTGTTTTGGCTAAAATATaGCAGGAAGGCATTCCTTGG +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFVLAKI*QEGIPW
Trigger: CCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAAC...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCTAAAAGCATTCCTCTaGGCTATGGGGTTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYLKAFL*AMGLSS
Trigger: AGAACTTAACCCCATAGCTCAGAGGAATGCTTTTAG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATGACTTCTTTATGGGCTaGAAGGAGACAGAACATCCA +
Preference number: 4 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNDFFMG*KETEHP
Trigger: TGGATGTTCTGTCTCCTTTCAGCCCATAAAGAAGTC...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
3UTR CAA 72 bp GTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTaGGCCTTACCAAAAACCATCGAAATGTCCAGGATA +
Preference number: 4 (lower is better)
Translates to: VYVSILCFAYQS*ALPKTIEMSRI
Trigger: TATCCTGGACATTTCGATGGTTTTTGGTAAGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATAAGTTGTCCCATCCCTaGAATGTTTCCTATTTCACT +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYKLSHP*NVSYFT
Trigger: AGTGAAATAGGAAACATTTCAGGGATGGGACAACTT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR GCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAGTGTTATATCCGTGCTaGCATATCACTAAAATAGGC +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIVLYPC*HITKIG
Trigger: GCCTATTTTAGTGATATGGCAGCACGGATATAACAC...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGTGTTATATCCGTGCTaGCATATCACTAAAATAGGC +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYVLYPC*HITKIG
Trigger: GCCTATTTTAGTGATATGGCAGCACGGATATAACAC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCTAGCATGCCTGTTTTaGATACCAGTAGAATCAAGT +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYLACLF*IPVESS
Trigger: ACTTGATTCTACTGGTATGCAAAACAGGCATGCTAG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGCCCAAGATCTGCTTTaGTTCCTCTACAATTATTTG +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYAQDLL*FLYNYL
Trigger: CAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGGC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422678.2
CDS-3UTR CCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp CTCCTTAAGATCCAGATGGCACTTGACTGTCATTTTATAATGGTTTTCCTTCAACTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 4 (lower is better)
Translates to: LLKIQMALDCHFIMVFLQLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...TTGAAGGAAAACCATTATAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422678.2
ENST00000554470.5
CDS-3UTR CCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTCTAATACTATTCCAATaGACTGAGCTGGAGAAATGG +
Preference number: 4 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPLILFQ*TELEKW
Trigger: CCATTTCTCCAGCTCAGTCCATTGGAATAGTATTAG...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
3UTR CAA 72 bp TGCCTGTTTTGCATACCAGTAGAATCAAGTCCAGTTTaGCCATTTGTGGATAACTATGACAAGATACAAAAG +
Preference number: 4 (lower is better)
Translates to: CLFCIPVESSPV*PFVDNYDKIQK
Trigger: CTTTTGTATCTTGTCATAGTTATCCACAAATGGCAAAACTGGACTTGATTCTACTGGTATGCAAAACAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR TCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR TCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATAAAAAGTTGACCATCTaGCCAGTGGATAATACTTTC +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYKKLTI*PVDNTF
Trigger: GAAAGTATTATCCACTGGTCAGATGGTCAACTTTTT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTCACCAAGATCTGCTTTaGTTCCTCTACAATTATTTG +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFHQDLL*FLYNYL
Trigger: CAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTG...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCACCAAGATCTGCTTTaGTTCCTCTACAATTATTTG +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYHQDLL*FLYNYL
Trigger: CAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR GCA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTCAGTATTCTCTGTTTTaGTTATCAGAGTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPQYSLF*LSEFGL
Trigger: AAGGCCAAACTCTGATAAGCAAAACAGAGAATACTG...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR GCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACAGTATTCTCTGTTTTaGTTATCAGAGTTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIQYSLF*LSEFGL
Trigger: AAGGCCAAACTCTGATAAGCAAAACAGAGAATACTG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTTCCTTAAGATCCAGATaGCACTTGACTGTCATTTTA +
Preference number: 4 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFSLRSR*HLTVIL
Trigger: TAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGA...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CCA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 4 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CCA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCAGGAAGGCATTCCTTaGGTTCTATATAAAAGTAAC +
Preference number: 4 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYQEGIP*VLYKSN
Trigger: GTTACTTTTATATAGAACCCAAGGAATGCCTTCCTG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS GCA 90 bp ATCATTCACTGTAACTCCAGAAGCCATAGTGCCCTCGGCTGTGGCTaGGGCGGCAGCTCGGGCTTCGGCTCTGTGGCACTGGGAGGAGAA +
Preference number: 5 (lower is better)
Translates to: IIHCNSRSHSALGCG*GGSSGFGSVALGGE
Trigger: TTCTCCTCCCAGTGCCACAGAGCCGAAGCCCGAGCTGCCGCCGCAGCCACAGCCGAGGGCACTATGGCTTCTGGAGTTACAGTGAATGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554470.5
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGGCAATCCTAGCACTTTaGGGAGGCGGAGGTCAGAGG +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLAILAL*GGGGQR
Trigger: CCTCTGACCTCCGCCTCCCAAAAGTGCTAGGATTGC...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS CCA 90 bp AAGGAGTCTAACTCATCCTGCCCATTCATCCTTCTTAAAGGGGTTTaGACGTGGAAGCGAAAGGGACAAATACAAGTTGTCCCATCCCTG +
Preference number: 5 (lower is better)
Translates to: KESNSSCPFILLKGV*TWKRKGQIQVVPSL
Trigger: CAGGGATGGGACAACTTGTATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAGGATGAATGGGCAGGATGAGTTAGACTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CAA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCACCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 5 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATCCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 5 (lower is better)
Translates to: TELEKWKLLKIQMALDCHPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGGTGAGGGTGGGGAGTTaGATCTCAAAACAATGTTCC +
Preference number: 5 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMVRVGS*ISKQCS
Trigger: GGAACATTGTTTTGAGATCAAACTCCCCACCCTCAC...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAGTGAGGGTGGGGAGTTaGATCTCAAAACAATGTTCC +
Preference number: 5 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASVRVGS*ISKQCS
Trigger: GGAACATTGTTTTGAGATCAAACTCCCCACCCTCAC...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTGTGAGGGTGGGGAGTTaGATCTCAAAACAATGTTCC +
Preference number: 5 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAVRVGS*ISKQCS
Trigger: GGAACATTGTTTTGAGATCAAACTCCCCACCCTCAC...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAATCAACTCGGCTGGCCTaGGAGGCCAAAATCAGGTTA +
Preference number: 5 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQSTRLA*EAKIRL
Trigger: TAACCTGATTTTGGCCTCCAAGGCCAGCCGAGTTGA...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000672163.1
CDS CCA 90 bp CTGAAATGTTTCCTATTTCACTGGGTGATGTCAGAGCTTCAGGAGTaGCAGCAAAAATACCTTCTGTATTGTGTCAACTCGGCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: LKCFLFHWVMSELQE*QQKYLLYCVNSAGL
Trigger: AAGGCCAGCCGAGTTGACACAATACAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGAAACATTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000672163.1
CDS CCA 90 bp TCTAACTCATCCTGCCCATTCATCCTTCTTAAAGGGGTTTGGACGTaGAAGCGAAAGGGACAAATACAAGTTGTCCCATCCCTGAAATGT +
Preference number: 5 (lower is better)
Translates to: SNSSCPFILLKGVWT*KRKGQIQVVPSLKC
Trigger: ACATTTCAGGGATGGGACAACTTGTATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAGGATGAATGGGCAGGATGAGTTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS CCA 90 bp CTGAAATGTTTCCTATTTCACTGGGTGATGTCAGAGCTTCAGGAGTaGCAGCAAAAATACCTTCTGTATTGTGTCAACTCGGCTGGCCAT +
Preference number: 5 (lower is better)
Translates to: LKCFLFHWVMSELQE*QQKYLLYCVNSAGH
Trigger: ATGGCCAGCCGAGTTGACACAATACAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGAAACATTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000672517.1
CDS-3UTR CAA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 5 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp AGGCAACATTTACTGGGACCTGCCTGCCCACCTCTAGTAGCTTTAATACTATTCGCAGTATTTGAGCTTTaGAAGTGGTGGCTCATGCAT +
Preference number: 5 (lower is better)
Translates to: RQHLLGPACPPLVALILFAVFEL*KWWLMH
Trigger: ATGCATGAGCCACCACTTCAAAAGCTCAAATACTGC...GAATAGTATTAAAGCTACTAGAGGTGGGCAGGCAGGTCCCAGTAAATGTTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS CCA 90 bp GGACAAATACAAGTTGTCCCATCCCTGAAATGTTTCCTATTTCACTaGGTGATGTCAGAGCTTCAGGAGTGGCAGCAAAAATACCTTCTG +
Preference number: 5 (lower is better)
Translates to: GQIQVVPSLKCFLFH*VMSELQEWQQKYLL
Trigger: CAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGAAACATTTCAGGGATGGGACAACTTGTATTTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACATATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATACTAGCATGCCTGTTTaGCATACCAGTAGAATCAAG +
Preference number: 5 (lower is better)
Translates to: TELEKWKLLKIQMALDCHTSMPV*HTSRIK
Trigger: CTTGATTCTACTGGTATGCAAAACAGGCATGCTAGT...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TATCCGTGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGCTTTTTGATCTCCTCTaGTGTAGAAGATTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: YPCCHITKIGLPRQVRCMLFDLL*CRRFPY
Trigger: GTAAGGAAATCTTCTACACAAGAGGAGATCAAAAAG...CATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCACGGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGTATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCTTTTTGATCTCCTCTaGTGTAGAAGATTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: CCHITKIGLPRQVRCMNALFDLL*CRRFPY
Trigger: GTAAGGAAATCTTCTACACAAGAGGAGATCAAAAAG...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACACCACCAAGATCTGCTTaGCTTCCTCTACAATTATTT +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTPPRSA*LPLQLF
Trigger: AAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGG...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTCCTTCATTCATTGTGTaGGAAGGGCCCAGTGGAAAG +
Preference number: 5 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPPSFIV*EGPSGK
Trigger: CTTTCCACTGGGCCCTTCCAACACAATGAATGAAGG...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: TELEKWKLLKIQMALDCHEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ACTGAGCTGGAGAAATGGAAGCTCCTTAAGATCCAGATGGCACTTGACTGTCATATGCCACAATTTTTATaGCAACGTGGCCATTTTTGT +
Preference number: 5 (lower is better)
Translates to: TELEKWKLLKIQMALDCHMPQFL*QRGHFC
Trigger: ACAAAAATGGCCACGTTGCAATAAAAATTGTGGCAT...ATGACAGTCAAGTGCCATCTGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TGCTGCCATATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTATGCCACAATTTTTATaGCAACGTGGCCATTTTTGT +
Preference number: 5 (lower is better)
Translates to: CCHITKIGLPRQVRCMNAMPQFL*QRGHFC
Trigger: ACAAAAATGGCCACGTTGCAATAAAAATTGTGGCAT...AGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGATATGGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAGTCCAGTTTTGCCATTaGTGGATAACTATGACAAGA +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTVQFCH*WITMTR
Trigger: TCTTGTCATAGTTATCCACAAATGGCAAAACTGGAC...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGGTCCAGTTTTGCCATTaGTGGATAACTATGACAAGA +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLVQFCH*WITMTR
Trigger: TCTTGTCATAGTTATCCACAAATGGCAAAACTGGAC...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAGAATCAAGTCCAGTTTaGCCATTTGTGGATAACTAT +
Preference number: 5 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASESSPV*PFVDNY
Trigger: ATAGTTATCCACAAATGGCAAAACTGGACTTGATTC...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTGCTTATCAGAGTTaGGCCTTACCAAAAACCATC +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLFAYQS*ALPKTI
Trigger: GATGGTTTTTGGTAAGGCCAAACTCTGATAAGCAAA...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTCAGTATTCTCTGTTTaGCTTATCAGAGTTTGGCCT +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLSVFSV*LIRVWP
Trigger: AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGA...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp ATCACTAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAATGCTCAAGCCTCAGCCAACTGTTCCCATTaGTCTGAAAATGCTAAAATT +
Preference number: 5 (lower is better)
Translates to: ITKIGLPRQVRCMNAQASANCSH*SENAKI
Trigger: AATTTTAGCATTTTCAGACAAATGGGAACAGTTGGC...TGAGGCTTGAGCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACACTTTTTGATCTCCTCTaGTGTAGAAGATTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTLFDLL*CRRFPY
Trigger: GTAAGGAAATCTTCTACACAAGAGGAGATCAAAAAG...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAACCACCAAGATCTGCTTaGCTTCCTCTACAATTATTT +
Preference number: 5 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQPPRSA*LPLQLF
Trigger: AAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGG...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTT +
Preference number: 5 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWPPRSA*LPLQLF
Trigger: AAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGG...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAATCACTAAAATAGGCTaGCCAAGGCAGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIITKIG*PRQVRC
Trigger: ACACCTCACCTGCCTTGGCAAGCCTATTTTAGTGAT...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTGTGAGGGTGGGGAGTTaGATCTCAAAACAATGTTCC +
Preference number: 5 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPVRVGS*ISKQCS
Trigger: GGAACATTGTTTTGAGATCAAACTCCCCACCCTCAC...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAAGCCTGAAATAAAATaGCTCAGTGCAAAAAGATCC +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTKPEIK*LSAKRS
Trigger: GGATCTTTTTGCACTGAGCAATTTTATTTCAGGCTT...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TTGACGATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGAAGCCTGAAATAAAATaGCTCAGTGCAAAAAGATCC +
Preference number: 5 (lower is better)
Translates to: LTITYIVVLAAREAYNQLKPEIK*LSAKRS
Trigger: GGATCTTTTTGCACTGAGCAATTTTATTTCAGGCTT...CAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGATCGTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TTTGCCAGATTCCATAAATTAGCTGCTACAAATGTTCTGTATCAGAGAAACTCACAGCTGATAGCCAGTTaGGGACACATGCCAACTGTT +
Preference number: 5 (lower is better)
Translates to: FARFHKLAATNVLYQRNSQLIAS*GHMPTV
Trigger: AACAGTTGGCATGTGTCCCAAACTGGCTATCAGCTG...TGAGTTTCTCTGATACAGAACATTTGTAGCAGCTAATTTATGGAATCTGGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CAA 90 bp GATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAGTCGTCCAATCAGATTaGTCACATTTTAAGAATCAG +
Preference number: 5 (lower is better)
Translates to: DISFIHCVGRAQWKGGNTVVQSD*SHFKNQ
Trigger: CTGATTCTTAAAATGTGACAAATCTGATTGGACGAC...TGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp CTCCTTAAGATCCAGATGGCACTTGACTGTCATTTTATAATGGTTTTCCTTCAATATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: LLKIQMALDCHFIMVFLQYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...TTGAAGGAAAACCATTATAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422678.2
ENST00000554470.5
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATATATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATTATTTCCTTCATTCATaGTGTTGGAAGGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYYFLHS*CWKGPV
Trigger: CACTGGGCCCTTCCAACACAATGAATGAAGGAAATA...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATATTTCCTTCATTCATTGTGTTGGAAGGGCCCAGTGGAAAGGGGGAAATACAAGTCGTCCAATCAGATTaGTCACATTTTAAGAATCAG +
Preference number: 5 (lower is better)
Translates to: IFPSFIVLEGPSGKGEIQVVQSD*SHFKNQ
Trigger: CTGATTCTTAAAATGTGACAAATCTGATTGGACGAC...TTGTATTTCCCCCTTTCCACTGGGCCCTTCCAACACAATGAATGAAGGAAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATCACATACATTGTAGTGCTTGCTGCAAGGGAGGCATATAACCAGTTGTTTTGGGTCGTCCAATCAGATTaGTCACATTTTAAGAATCAG +
Preference number: 5 (lower is better)
Translates to: ITYIVVLAAREAYNQLFWVVQSD*SHFKNQ
Trigger: CTGATTCTTAAAATGTGACAAATCTGATTGGACGAC...CCAAAACAACTGGTTATATGCCTCCCTTGCAGCAAGCACTACAATGTATGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATAAAATACCTTCTGTATaGTGTCAACTCGGCTGGCCT +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYKIPSV*CQLGWP
Trigger: AGGCCAGCCGAGTTGACACAATACAGAAGGTATTTT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000672163.1
CDS-3UTR CAA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTACTAGCATGCCTGTTTaGCATACCAGTAGAATCAAG +
Preference number: 5 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPTSMPV*HTSRIK
Trigger: CTTGATTCTACTGGTATGCAAAACAGGCATGCTAGT...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATACTAGCATGCCTGTTTaGCATACCAGTAGAATCAAG +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYTSMPV*HTSRIK
Trigger: CTTGATTCTACTGGTATGCAAAACAGGCATGCTAGT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS GCA 90 bp ATCATTCACTGTAACTCCAGAAGCTTTAGTCTGGACATCAAAAATTaGACCGTACCATGTAAGTCGTCCAATCAGATTTGTCACATTTTA +
Preference number: 5 (lower is better)
Translates to: IIHCNSRSFSLDIKN*TVPCKSSNQICHIL
Trigger: TAAAATGTGACAAATCTGATTGGACGACTTACATGGTACGGTGCAATTTTTGATGTCCAGACTAAAGCTTCTGGAGTTACAGTGAATGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000673315.1
CDS-3UTR CAA 90 bp CTCCACCTACTATTAAATGTGCAAGCAAAAACAGGACCTATGAAGAGCAAAATGGAATCAAGTCCAGTTTaGCCATTTGTGGATAACTAT +
Preference number: 5 (lower is better)
Translates to: LHLLLNVQAKTGPMKSKMESSPV*PFVDNY
Trigger: ATAGTTATCCACAAATGGCAAAACTGGACTTGATTC...CATTTTGCTCTTCATAGGTCCTGTTTTTGCTTGCACATTTAATAGTAGGTGGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATATTTGCTTATCAGAGTTaGGCCTTACCAAAAACCATC +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIFAYQS*ALPKTI
Trigger: GATGGTTTTTGGTAAGGCCAAACTCTGATAAGCAAA...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATATCAGTATTCTCTGTTTaGCTTATCAGAGTTTGGCCT +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYISVFSV*LIRVWP
Trigger: AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGA...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp AACAAGGCAACGTTCTGTAATATGCCACAATTTTTATTGCAACGTGGCCATTTTTCAGTATTCTCTGTTTaGCTTATCAGAGTTTGGCCT +
Preference number: 5 (lower is better)
Translates to: NKATFCNMPQFLLQRGHFSVFSV*LIRVWP
Trigger: AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGA...AAAATGGCCACGTTGCAATAAAAATTGTGGCATATTACAGAACGTTGCCTTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp CTCCTTAAGATCCAGATGGCACTTGACTGTCATTTTATAATGGTTTTCCTTCAAAGCCCAAGATCTGCTTaGCTTCCTCTACAATTATTT +
Preference number: 5 (lower is better)
Translates to: LLKIQMALDCHFIMVFLQSPRSA*LPLQLF
Trigger: AAATAATTGTAGAGGAAGCAAAGCAGATCTTGGGCT...TTGAAGGAAAACCATTATAAAATGACAGTCAAGTGCCATCTGGATCTTAAGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422678.2
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATACTTTTTGATCTCCTCTaGTGTAGAAGATTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYILFDLL*CRRFPY
Trigger: GTAAGGAAATCTTCTACACAAGAGGAGATCAAAAAG...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATCTTTTTGATCTCCTCTaGTGTAGAAGATTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYLFDLL*CRRFPY
Trigger: GTAAGGAAATCTTCTACACAAGAGGAGATCAAAAAG...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TTTGCCAGATTCCATAAATTAGCTGCTACAAATGTTCTGTATCAGAGAAACTCACCACCAAGATCTGCTTaGCTTCCTCTACAATTATTT +
Preference number: 5 (lower is better)
Translates to: FARFHKLAATNVLYQRNSPPRSA*LPLQLF
Trigger: AAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGG...TGAGTTTCTCTGATACAGAACATTTGTAGCAGCTAATTTATGGAATCTGGCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000422678.2
ENST00000554470.5
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp CATATGGTTAAGTATACGTCAGTATTCTCTGTTTTGCTTATCAGAGTTTGGCCTATGCCACAATTTTTATaGCAACGTGGCCATTTTTGT +
Preference number: 5 (lower is better)
Translates to: HMVKYTSVFSVLLIRVWPMPQFL*QRGHFC
Trigger: ACAAAAATGGCCACGTTGCAATAAAAATTGTGGCAT...AGGCCAAACTCTGATAAGCAAAACAGAGAATACTGACGTATACTTAACCATATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATGCCACAATTTTTATaGCAACGTGGCCATTTTTGT +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYMPQFL*QRGHFC
Trigger: ACAAAAATGGCCACGTTGCAATAAAAATTGTGGCAT...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000554470.5
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp TATAACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATGAATCAAGTCCAGTTTaGCCATTTGTGGATAACTAT +
Preference number: 5 (lower is better)
Translates to: YNQLFWLKYDRKAFLGFYESSPV*PFVDNY
Trigger: ATAGTTATCCACAAATGGCAAAACTGGACTTGATTC...ATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAAAGCCTGAAATAAAATaGCTCAGTGCAAAAAGATCC +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIKPEIK*LSAKRS
Trigger: GGATCTTTTTGCACTGAGCAATTTTATTTCAGGCTT...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000672517.1
CDS-3UTR CAA 90 bp AACCAGTTGTTTTGGCTAAAATATGACAGGAAGGCATTCCTTGGGTTCTATATAGTCGTCCAATCAGATTaGTCACATTTTAAGAATCAG +
Preference number: 5 (lower is better)
Translates to: NQLFWLKYDRKAFLGFYIVVQSD*SHFKNQ
Trigger: CTGATTCTTAAAATGTGACAAATCTGATTGGACGAC...TATATAGAACCCAAGGAATGCCTTCCTGTCATATTTTAGCCAAAACAACTGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS-3UTR CAA 90 bp ATTATGAGAGGAAATTTAAGTGGAGGGATGATTCCTCTACTTCTACATGGAAATGAGGCATATAACCAGTaGTTTTGGCTAAAATATGAC +
Preference number: 5 (lower is better)
Translates to: IMRGNLSGGMIPLLLHGNEAYNQ*FWLKYD
Trigger: GTCATATTTTAGCCAAAACAACTGGTTATATGCCTC...ATTTCCATGTAGAAGTAGAGGAATCATCCCTCCACTTAAATTTCCTCTCATAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298159.11
CDS GCA 72 bp TGTAACTCCAGAAGCCATAGTGCCCTCGGCTGTGGCTaGGGCGGCAGCTCGGGCTTCGGCTCTGTGGCACTG +
Preference number: 6 (lower is better)
Translates to: CNSRSHSALGCG*GGSSGFGSVAL
Trigger: CAGTGCCACAGAGCCGAAGCCCGAGCTGCCGCCGCAGCCACAGCCGAGGGCACTATGGCTTCTGGAGTTACA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554470.5
CDS GCA 72 bp TCAGTAGACGATACAGCGAAGGAGTCTAACTCATCCTaGCCATTCATCCTTCTTAAAGGGGTTTGGACGTGG +
Preference number: 6 (lower is better)
Translates to: SVDDTAKESNSS*PFILLKGVWTW
Trigger: CCACGTCCAAACCCCTTTAAGAAGGATGAATGGGCAGGATGAGTTAGACTCCTTCGCTGTATCGTCTACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS CAA 72 bp AGAGCTTCAGGAGTGGCAGCAAAAATACCTTCTGTATaGTGTCAACTCGGCTGGCCTTGGAGGCCAAAATCA +
Preference number: 6 (lower is better)
Translates to: RASGVAAKIPSV*CQLGWPWRPKS
Trigger: TGATTTTGGCCTCCAAGGCCAGCCGAGTTGACACAATACAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000672163.1
CDS CCA 72 bp AACTCATCCTGCCCATTCATCCTTCTTAAAGGGGTTTaGACGTGGAAGCGAAAGGGACAAATACAAGTTGTC +
Preference number: 6 (lower is better)
Translates to: NSSCPFILLKGV*TWKRKGQIQVV
Trigger: GACAACTTGTATTTGTCCCTTTCGCTTCCACGTCCAAACCCCTTTAAGAAGGATGAATGGGCAGGATGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000341223.8
ENST00000672163.1
ENST00000672517.1
CDS CCA 72 bp TTCCTATTTCACTGGGTGATGTCAGAGCTTCAGGAGTaGCAGCAAAAATACCTTCTGTATTGTGTCAACTCG +
Preference number: 6 (lower is better)
Translates to: FLFHWVMSELQE*QQKYLLYCVNS
Trigger: CGAGTTGACACAATACAGAAGGTATTTTTGCTGCCACTCCTGAAGCTCTGACATCACCCAGTGAAATAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000672163.1
ENST00000672517.1
CDS CAA 90 bp AGGGGTCCTCTACAGTATCACCAATGTCACCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTTGTCTTTTGTCATCGCTTAAACAGA +
Preference number: 6 (lower is better)
Translates to: RGPLQYHQCHPPRSA*LPLQLFVFCHRLNR
Trigger: TCTGTTTAAGCGATGACAAAAGACAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGGGTGACATTGGTGATACTGTAGAGGACCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000555765.5
ENST00000556161.1
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS CAA 72 bp CTACAGTATCACCAATGTCACCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTTGTCTTTTGTCATCGC +
Preference number: 6 (lower is better)
Translates to: LQYHQCHPPRSA*LPLQLFVFCHR
Trigger: GCGATGACAAAAGACAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGGGTGACATTGGTGATACTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000555765.5
ENST00000556161.1
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS GCA 72 bp TACAGTATCACCAATGTCACCCACCAAGATCTGCTTTaGTTCCTCTACAATTATTTGTCTTTTGTCATCGCT +
Preference number: 6 (lower is better)
Translates to: YSITNVTHQDLL*FLYNYLSFVIA
Trigger: AGCGATGACAAAAGACAAATAATTGTAGAGGAAGCAAAGCAGATCTTGGTGGGTGACATTGGTGATACTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000298159.11
ENST00000341223.8
ENST00000555765.5
ENST00000556161.1
ENST00000672163.1
ENST00000672517.1
ENST00000673315.1
CDS GCA 72 bp TGTAACTCCAGAAGCTTTAGTCTGGACATCAAAAATTaGACCGTACCATGTAAGTCGTCCAATCAGATTTGT +
Preference number: 6 (lower is better)
Translates to: CNSRSFSLDIKN*TVPCKSSNQIC
Trigger: ACAAATCTGATTGGACGACTTACATGGTACGGTGCAATTTTTGATGTCCAGACTAAAGCTTCTGGAGTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000673315.1
CDS CAA 72 bp GTGCACTTTCAGGAGCCTTTCATATCATTAAAAACTTaGATGACTTCATCATTCACTGTAACTCCAGAAGCC +
Preference number: 6 (lower is better)
Translates to: VHFQEPFISLKT*MTSSFTVTPEA
Trigger: GGCTTCTGGAGTTACAGTGAATGATGAAGTCATCAAAGTTTTTAATGATATGAAAGGCTCCTGAAAGTGCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000554470.5