Pregenerated sensors for CERNA3 (Homo sapiens)
Ensembl gene IDs: ENSG00000253603Ensembl transcript IDs: ENST00000521403.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGAGGAGTTTCTCAGGTTTCCGTGTCGCCTGTTCTCTCGACCAGGTaGCCCTCTCGGCGCAGGCGGGGACCCCACCCTGCGGGACTTCGG | + |
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Preference number: 5 (lower is better) Translates to: RGVSQVSVSPVLSTR*PSRRRRGPHPAGLR Trigger: CCGAAGTCCCGCAGGGTGGGGTCCCCGCCTGCGCCGAGAGGGCCACCTGGTCGAGAGAACAGGCGACACGGAAACCTGAGAAACTCCTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS GCA 90 bp | AGAAGCCAAGTTCAGGTCCTTTCCAGAAATAGATGTAGATACTTCTaGTGGACTGGGAAGCCAGGAGCTCATCCTCAGAGAGCAACGAAT | + |
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Preference number: 5 (lower is better) Translates to: RSQVQVLSRNRCRYF*WTGKPGAHPQRATN Trigger: ATTCGTTGCTCTCTGAGGATGAGCTCCTGGCTTCCCAGTCCAGCAGAAGTATCTACATCTATTTCTGGAAAGGACCTGAACTTGGCTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS TCA 90 bp | AAAGCAAAATTTGCAACGGAAAAACCAGAGTTCGTGTGCACTTTATaGGGAAGAGGGTTAGGTGCACCAGACAGAGGAGTTTCTCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: KAKFATEKPEFVCTL*GRGLGAPDRGVSQV Trigger: AACCTGAGAAACTCCTCTGTCTGGTGCACCTAACCCTCTTCCTCATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAATTTTGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS GCA 90 bp | CCTCAGAGAGCAACGAATGGTATGGTCTATGTAGAAAGCAAAATTTaGAACGGAAAAACCAGAGTTCGTGTGCACTTTATGAGGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: PQRATNGMVYVESKI*NGKTRVRVHFMRKR Trigger: CCTCTTCCTCATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAATTTTGCTTTCTACATAGACCATACCATTCGTTGCTCTCTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CCA 72 bp | TCTCAGGTTTCCGTGTCGCCTGTTCTCTCGACCAGGTaGCCCTCTCGGCGCAGGCGGGGACCCCACCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: SQVSVSPVLSTR*PSRRRRGPHPA Trigger: CGCAGGGTGGGGTCCCCGCCTGCGCCGAGAGGGCCACCTGGTCGAGAGAACAGGCGACACGGAAACCTGAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CCA 72 bp | ACTTTATCCAACAGAAAGGAGATGAGGTATCAGGACTaGGTGGCTAGCCAGGTTCCAGGCCGGGCCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TLSNRKEMRYQD*VASQVPGRASG Trigger: TCCTGAGGCCCGGCCTGGAACCTGGCTAGCCACCCAGTCCTGATACCTCATCTCCTTTCTGTTGGATAAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CCA 72 bp | CAGGTCCTTTCCAGAAATAGATGTAGATACTTCTGCTaGACTGGGAAGCCAGGAGCTCATCCTCAGAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: QVLSRNRCRYFC*TGKPGAHPQRA Trigger: TGCTCTCTGAGGATGAGCTCCTGGCTTCCCAGTCCAGCAGAAGTATCTACATCTATTTCTGGAAAGGACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS TCA 72 bp | TTTGCAACGGAAAAACCAGAGTTCGTGTGCACTTTATaGGGAAGAGGGTTAGGTGCACCAGACAGAGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: FATEKPEFVCTL*GRGLGAPDRGV Trigger: AACTCCTCTGTCTGGTGCACCTAACCCTCTTCCTCATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CCA 72 bp | TGGGAAGCCAGGAGCTCATCCTCAGAGAGCAACGAATaGTATGGTCTATGTAGAAAGCAAAATTTGCAACGG | + |
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Preference number: 6 (lower is better) Translates to: WEARSSSSESNE*YGLCRKQNLQR Trigger: CCGTTGCAAATTTTGCTTTCTACATAGACCATACCATTCGTTGCTCTCTGAGGATGAGCTCCTGGCTTCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CAA 90 bp | TCCTCAGAGAGCAACGAATGGTATGGTCTATGTAGAAAGCAAAATTaGCAACGGAAAAACCAGAGTTCGTGTGCACTTTATGAGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSESNEWYGLCRKQN*QRKNQSSCALYEEE Trigger: CTCTTCCTCATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAATTTTGCTTTCTACATAGACCATACCATTCGTTGCTCTCTGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS GCA 72 bp | GCAACGAATGGTATGGTCTATGTAGAAAGCAAAATTTaGAACGGAAAAACCAGAGTTCGTGTGCACTTTATG | + |
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Preference number: 6 (lower is better) Translates to: ATNGMVYVESKI*NGKTRVRVHFM Trigger: CATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAATTTTGCTTTCTACATAGACCATACCATTCGTTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CAA 72 bp | AGCAACGAATGGTATGGTCTATGTAGAAAGCAAAATTaGCAACGGAAAAACCAGAGTTCGTGTGCACTTTAT | + |
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Preference number: 6 (lower is better) Translates to: SNEWYGLCRKQN*QRKNQSSCALY Trigger: ATAAAGTGCACACGAACTCTGGTTTTTCCGTTGCAAATTTTGCTTTCTACATAGACCATACCATTCGTTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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| CDS CCA 72 bp | GTGATTATGAACAGATGTTCAGTATTAAGAAGACCCTaGGGGATCTTATCCAATGACTTTATCCAACAGAAA | + |
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Preference number: 6 (lower is better) Translates to: VIMNRCSVLRRP*GILSNDFIQQK Trigger: TTTCTGTTGGATAAAGTCATTGGATAAGATCCCCCAGGGTCTTCTTAATACTGAACATCTGTTCATAATCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521403.1 |
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