Pregenerated sensors for CERNA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000259577Ensembl transcript IDs: ENST00000559779.2, ENST00000560518.1, ENST00000654724.1
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GACGCGGACATCGCACCAGGCACTGCGCCAGAGCGCGCGCCCAGGTaGGGGGTCTTGGGGCTCAGGCGCAGCAGCCGGGCCCGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: DADIAPGTAPERAPR*GVLGLRRSSRARSC Trigger: GCAGCTGCGGGCCCGGCTGCTGCGCCTGAGCCCCAAGACCCCGCACCTGGGCGCGCGCTCTGGCGCAGTGCCTGGTGCGATGTCCGCGTC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559779.2 |
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| CDS GCA 90 bp | GCCACGGGCCCGCAGCCCGCAATCAAGTCCCACAGAGCGGAGATCTaGACGAGAGGCTTGGGGATGGGAGGGCCATGTCGCGGGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: ATGPQPAIKSHRAEI*TRGLGMGGPCRGGL Trigger: GAGGCCCCCGCGACATGGCCCTCCCATCCCCAAGCCTCTCGTGCAGATCTCCGCTCTGTGGGACTTGATTGCGGGCTGCGGGCCCGTGGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS TCA 90 bp | GTAAAATGGGCGTCACACTCCCTGCCTCTCCCGGAGGAGAGAGGCTaGCGCGGACATCGCACCAGGCACTGCGCCAGAGCGCGCGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VKWASHSLPLPEERG*RGHRTRHCARARAQ Trigger: CTGGGCGCGCGCTCTGGCGCAGTGCCTGGTGCGATGTCCGCGTCAGCCTCTCTCCTCCGGGAGAGGCAGGGAGTGTGACGCCCATTTTAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000654724.1 |
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| CDS TCA 90 bp | CTGTGCCAGCCCTTCATTCTAAAGGGCAGGAGGTGGCCTCAGAAGTaGGAGGTCCGAGATGCCTGGGCGTGGGCTCAGAAGCCCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: LCQPFILKGRRWPQK*EVRDAWAWAQKPQV Trigger: GACCTGGGGCTTCTGAGCCCACGCCCAGGCATCTCGGACCTCTCACTTCTGAGGCCACCTCCTGCCCTTTAGAATGAAGGGCTGGCACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS TCA 90 bp | AGCACAGCCTCCCTGTCTCTCCGCAGTTCCGGGAATGCTGGAGTATaGGAGCCTGCAGGGCATTTCCGGCCTGAAGCCCACAGGCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: STASLSLRSSGNAGV*EPAGHFRPEAHRLP Trigger: CGGAAGCCTGTGGGCTTCAGGCCGGAAATGCCCTGCAGGCTCTCATACTCCAGCATTCCCGGAACTGCGGAGAGACAGGGAGGCTGTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 90 bp | ATGACCTCCGTCCTGCAACAGCTGAGCTACTTTTACACCACCATGTaGCAGAACGGCCTGGACCCCGAGCTTGTGAGGCAGGCGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: MTSVLQQLSYFYTTM*QNGLDPELVRQAVK Trigger: CTTCACCGCCTGCCTCACAAGCTCGGGGTCCAGGCCGTTCTGGCACATGGTGGTGTAAAAGTAGCTCAGCTGTTGCAGGACGGAGGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS TCA 90 bp | TGCCTCTCACACTTCAGGCGCTTGCGGAGAGGGGATGCTTCAGTCTaGCAGAAGTCGCTAAACGTGCATCCTGGCAGAACTGTGCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: CLSHFRRLRRGDASV*QKSLNVHPGRTVPA Trigger: GGCTGGCACAGTTCTGCCAGGATGCACGTTTAGCGACTTCTGTCAGACTGAAGCATCCCCTCTCCGCAAGCGCCTGAAGTGTGAGAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CCA 90 bp | GAAAAACGTGCTGCTTCAAACCTACAAGAGGAGCTGCAGCCCCGCTaGAAACAGCCGTCCATCCCTAACCCTGACACACACCCTGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: EKRAASNLQEELQPR*KQPSIPNPDTHPGV Trigger: GACACCAGGGTGTGTGTCAGGGTTAGGGATGGACGGCTGTTTCCAGCGGGGCTGCAGCTCCTCTTGTAGGTTTGAAGCAGCACGTTTTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 90 bp | CCTGTGAAGCTGAAAAACGTGCTGCTTCAAACCTACAAGAGGAGCTaGAGCCCCGCTGGAAACAGCCGTCCATCCCTAACCCTGACACAC | + |
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Preference number: 5 (lower is better) Translates to: PVKLKNVLLQTYKRS*SPAGNSRPSLTLTH Trigger: GTGTGTCAGGGTTAGGGATGGACGGCTGTTTCCAGCGGGGCTGCAGCTCCTCTTGTAGGTTTGAAGCAGCACGTTTTTCAGCTTCACAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 90 bp | CTTAGAACAGTGCCTCTCACACTTCAGGCGCTTGCGGAGAGGGGATaGTTCAGTCTGACAGAAGTCGCTAAACGTGCATCCTGGCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: LRTVPLTLQALAERG*FSLTEVAKRASWQN Trigger: GTTCTGCCAGGATGCACGTTTAGCGACTTCTGTCAGACTGAAGCATCCCCTCTCCGCAAGCGCCTGAAGTGTGAGAGGCACTGTTCTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS GCA 90 bp | AGCCTGTCTGGGTCCAAATCCTGTCTCTCCCTCTTTCTTGGAGCATaGCCCCTGAGCAATTACTCAGTCTTTCTGTGCCCCAGTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SLSGSKSCLSLFLGA*PLSNYSVFLCPSFL Trigger: GAGGAAACTGGGGCACAGAAAGACTGAGTAATTGCTCAGGGGGCATGCTCCAAGAAAGAGGGAGAGACAGGATTTGGACCCAGACAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CCA 90 bp | AGGGAGCAGGTACAGAGAGGTGGGGACAGCACCCAAGATTCTGCTTaGCGATGTTCTCGCAGCATCTGTAACTTTGATCTGCCTTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: REQVQRGGDSTQDSA*RCSRSICNFDLPSH Trigger: ATGAGAAGGCAGATCAAAGTTACAGATGCTGCGAGAACATCGCCAAGCAGAATCTTGGGTGCTGTCCCCACCTCTCTGTACCTGCTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CCA 90 bp | ACGCATGCAAGATCACATAGGAGGGAAAAAGGAGAAGGCTTGAGTTaGATCATCCACACCAAAGTCCAGAGCACTAGGGAGCCAGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: THARSHRREKGEGLS*IIHTKVQSTREPAC Trigger: ACAGGCTGGCTCCCTAGTGCTCTGGACTTTGGTGTGGATGATCCAACTCAAGCCTTCTCCTTTTTCCCTCCTATGTGATCTTGCATGCGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS TCA 90 bp | CACAAACGCATGCAAGATCACATAGGAGGGAAAAAGGAGAAGGCTTaGGTTGGATCATCCACACCAAAGTCCAGAGCACTAGGGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: HKRMQDHIGGKKEKA*VGSSTPKSRALGSQ Trigger: CTGGCTCCCTAGTGCTCTGGACTTTGGTGTGGATGATCCAACTCAAGCCTTCTCCTTTTTCCCTCCTATGTGATCTTGCATGCGTTTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS TCA 90 bp | GCTATTTATGTGGTACTTCTACTTCTTGGCGTAGCCAAGTATTTTTaGAATCCTAAAGCCCCATTCGAATTCTTGTATACTTTCCTTAAT | + |
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Preference number: 5 (lower is better) Translates to: AIYVVLLLLGVAKYF*NPKAPFEFLYTFLN Trigger: ATTAAGGAAAGTATACAAGAATTCGAATGGGGCTTTAGGATTTCAAAAATACTTGGCTACGCCAAGAAGTAGAAGTACCACATAAATAGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 72 bp | ATCGCACCAGGCACTGCGCCAGAGCGCGCGCCCAGGTaGGGGGTCTTGGGGCTCAGGCGCAGCAGCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: IAPGTAPERAPR*GVLGLRRSSRA Trigger: GGCCCGGCTGCTGCGCCTGAGCCCCAAGACCCCGCACCTGGGCGCGCGCTCTGGCGCAGTGCCTGGTGCGAT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559779.2 |
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| CDS CAA 90 bp | CCAGGTCTGAGCCTGCGCGCCCACTTGACCCACCGCCATCTCCTTTaGCCGCCCCCAGGCCAGGGACCTGATTCCTGCGGCCAAGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PGLSLRAHLTHRHLL*PPPGQGPDSCGQAS Trigger: CGAGGCTTGGCCGCAGGAATCAGGTCCCTGGCCTGGGGGCGGCAAAAGGAGATGGCGGTGGGTCAAGTGGGCGCGCAGGCTCAGACCTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000559779.2 |
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| CDS CCA 72 bp | CCCACAGAGCGGAGATCTGCACGAGAGGCTTGGGGATaGGAGGGCCATGTCGCGGGGGCCTCACCGGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PTERRSAREAWG*EGHVAGASPVS Trigger: GGAGACCGGTGAGGCCCCCGCGACATGGCCCTCCCATCCCCAAGCCTCTCGTGCAGATCTCCGCTCTGTGGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 72 bp | AGCCTGCGCGCCCACTTGACCCACCGCCATCTCCTTTaGCCGCCCCCAGGCCAGGGACCTGATTCCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLRAHLTHRHLL*PPPGQGPDSCG Trigger: GCCGCAGGAATCAGGTCCCTGGCCTGGGGGCGGCAAAAGGAGATGGCGGTGGGTCAAGTGGGCGCGCAGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000559779.2 |
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| CDS CAA 90 bp | CAGCCCGCAATCAAGTCCCACAGAGCGGAGATCTGCACGAGAGGCTaGGGGATGGGAGGGCCATGTCGCGGGGGCCTCACCGGTCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: QPAIKSHRAEICTRG*GMGGPCRGGLTGLP Trigger: GGGGAGACCGGTGAGGCCCCCGCGACATGGCCCTCCCATCCCCAAGCCTCTCGTGCAGATCTCCGCTCTGTGGGACTTGATTGCGGGCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 72 bp | AGCCTGCGCGCCCACTTGACCCACCGCCATCTCCTTTaGCCGCCCCCAGGCCAGGGACCTGATTCCTGCGTG | + |
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Preference number: 6 (lower is better) Translates to: SLRAHLTHRHLL*PPPGQGPDSCV Trigger: CACGCAGGAATCAGGTCCCTGGCCTGGGGGCGGCAAAAGGAGATGGCGGTGGGTCAAGTGGGCGCGCAGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS CCA 72 bp | CCTCACCGGTCTCCCCAGAAGCGGGGAGTCCCGAGTTaGAATCCCGGCTTGGCCCTTCCCTCTGTGTGCGTC | + |
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Preference number: 6 (lower is better) Translates to: PHRSPQKRGVPS*NPGLALPSVCV Trigger: GACGCACACAGAGGGAAGGGCCAAGCCGGGATTCCAACTCGGGACTCCCCGCTTCTGGGGAGACCGGTGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000654724.1 |
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| CDS CAA 72 bp | GCCTCACCGGTCTCCCCAGAAGCGGGGAGTCCCGAGTaGGAATCCCGGCTTGGCCCTTCCCTCTGTGTGCGT | + |
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Preference number: 6 (lower is better) Translates to: ASPVSPEAGSPE*ESRLGPSLCVR Trigger: ACGCACACAGAGGGAAGGGCCAAGCCGGGATTCCAACTCGGGACTCCCCGCTTCTGGGGAGACCGGTGAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000654724.1 |
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| CDS GCA 72 bp | CCGCAGCCCGCAATCAAGTCCCACAGAGCGGAGATCTaGACGAGAGGCTTGGGGATGGGAGGGCCATGTCGC | + |
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Preference number: 6 (lower is better) Translates to: PQPAIKSHRAEI*TRGLGMGGPCR Trigger: GCGACATGGCCCTCCCATCCCCAAGCCTCTCGTGCAGATCTCCGCTCTGTGGGACTTGATTGCGGGCTGCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 72 bp | ATCAAGTCCCACAGAGCGGAGATCTGCACGAGAGGCTaGGGGATGGGAGGGCCATGTCGCGGGGGCCTCACC | + |
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Preference number: 6 (lower is better) Translates to: IKSHRAEICTRG*GMGGPCRGGLT Trigger: GGTGAGGCCCCCGCGACATGGCCCTCCCATCCCCAAGCCTCTCGTGCAGATCTCCGCTCTGTGGGACTTGAT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 90 bp | CCAGGTCTGAGCCTGCGCGCCCACTTGACCCACCGCCATCTCCTTTaGCCGCCCCCAGGCCAGGGACCTGATTCCTGCGTGAAGAAAAGA | + |
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Preference number: 6 (lower is better) Translates to: PGLSLRAHLTHRHLL*PPPGQGPDSCVKKR Trigger: TCTTTTCTTCACGCAGGAATCAGGTCCCTGGCCTGGGGGCGGCAAAAGGAGATGGCGGTGGGTCAAGTGGGCGCGCAGGCTCAGACCTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS CAA 90 bp | CTGGACCCCGAGCTTGTGAGGCAGGCGGTGAAGCAGCTCTTCTTCTaGATCGGGGCGGTCACGCTGAACAGCCTCTTCCTGCGCAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LDPELVRQAVKQLFF*IGAVTLNSLFLRKD Trigger: GTCCTTGCGCAGGAAGAGGCTGTTCAGCGTGACCGCCCCGATCAAGAAGAAGAGCTGCTTCACCGCCTGCCTCACAAGCTCGGGGTCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 72 bp | CAGCACAGCCTCCCTGTCTCTCCGCAGTTCCGGGAATaGTGGAGTATGAGAGCCTGCAGGGCATTTCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: QHSLPVSPQFRE*WSMRACRAFPA Trigger: GGCCGGAAATGCCCTGCAGGCTCTCATACTCCAGCATTCCCGGAACTGCGGAGAGACAGGGAGGCTGTGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 72 bp | CCTCGGGCAAATCACCCAGCATCCCTAAGCCACAGTTaGCCCGCTGGTAAAATGGGCGTCACACTCCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PRANHPASLSHS*PAGKMGVTLPA Trigger: GGCAGGGAGTGTGACGCCCATTTTACCAGCGGGCAAACTGTGGCTTAGGGATGCTGGGTGATTTGCCCGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000654724.1 |
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| CDS GCA 72 bp | GTCCTGCAACAGCTGAGCTACTTTTACACCACCATGTaGCAGAACGGCCTGGACCCCGAGCTTGTGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: VLQQLSYFYTTM*QNGLDPELVRQ Trigger: CTGCCTCACAAGCTCGGGGTCCAGGCCGTTCTGGCACATGGTGGTGTAAAAGTAGCTCAGCTGTTGCAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS GCA 72 bp | GTGCCTCTCACACTTCAGGCGCTTGCGGAGAGGGGATaGTTCAGTCTGACAGAAGTCGCTAAACGTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: VPLTLQALAERG*FSLTEVAKRAS Trigger: GGATGCACGTTTAGCGACTTCTGTCAGACTGAAGCATCCCCTCTCCGCAAGCGCCTGAAGTGTGAGAGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS TCA 72 bp | CACTTCAGGCGCTTGCGGAGAGGGGATGCTTCAGTCTaGCAGAAGTCGCTAAACGTGCATCCTGGCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: HFRRLRRGDASV*QKSLNVHPGRT Trigger: AGTTCTGCCAGGATGCACGTTTAGCGACTTCTGTCAGACTGAAGCATCCCCTCTCCGCAAGCGCCTGAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CAA 72 bp | TTAGATCAACAAACGAAGAGGGTTTCCGGTTCCTTGTaGGGGGAGCACCGTAGCTACCTGCGGCCAAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: LDQQTKRVSGSL*GEHRSYLRPSL Trigger: GAGGCTTGGCCGCAGGTAGCTACGGTGCTCCCCCAACAAGGAACCGGAAACCCTCTTCGTTTGTTGATCTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS CAA 72 bp | TATTTAGATCAACAAACGAAGAGGGTTTCCGGTTCCTaGTTGGGGGAGCACCGTAGCTACCTGCGGCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: YLDQQTKRVSGS*LGEHRSYLRPS Trigger: GCTTGGCCGCAGGTAGCTACGGTGCTCCCCCAACAAGGAACCGGAAACCCTCTTCGTTTGTTGATCTAAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS CAA 90 bp | TTTGTATATTTAGATCAACAAACGAAGAGGGTTTCCGGTTCCTTGTaGGGGGAGCACCGTAGCTACCTGCGGCCAAGCCTCGTAGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: FVYLDQQTKRVSGSL*GEHRSYLRPSLVAV Trigger: GACGGCTACGAGGCTTGGCCGCAGGTAGCTACGGTGCTCCCCCAACAAGGAACCGGAAACCCTCTTCGTTTGTTGATCTAAATATACAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS TCA 72 bp | AATCCTGTCTCTCCCTCTTTCTTGGAGCATGCCCCCTaGGCAATTACTCAGTCTTTCTGTGCCCCAGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: NPVSPSFLEHAP*AITQSFCAPVS Trigger: GGAAACTGGGGCACAGAAAGACTGAGTAATTGCTCAGGGGGCATGCTCCAAGAAAGAGGGAGAGACAGGATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CCA 72 bp | GTACAGAGAGGTGGGGACAGCACCCAAGATTCTGCTTaGCGATGTTCTCGCAGCATCTGTAACTTTGATCTG | + |
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Preference number: 6 (lower is better) Translates to: VQRGGDSTQDSA*RCSRSICNFDL Trigger: CAGATCAAAGTTACAGATGCTGCGAGAACATCGCCAAGCAGAATCTTGGGTGCTGTCCCCACCTCTCTGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CAA 90 bp | GCACAAACGCATGCAAGATCACATAGGAGGGAAAAAGGAGAAGGCTaGAGTTGGATCATCCACACCAAAGTCCAGAGCACTAGGGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: AQTHARSHRREKGEG*SWIIHTKVQSTREP Trigger: TGGCTCCCTAGTGCTCTGGACTTTGGTGTGGATGATCCAACTCAAGCCTTCTCCTTTTTCCCTCCTATGTGATCTTGCATGCGTTTGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CAA 90 bp | ATTTTTGTATATTTAGATCAACAAACGAAGAGGGTTTCCGGTTCCTaGTTGGGGGAGCACCGTAGCTACCTGCGGCCAAGCCTCGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: IFVYLDQQTKRVSGS*LGEHRSYLRPSLVA Trigger: GGCTACGAGGCTTGGCCGCAGGTAGCTACGGTGCTCCCCCAACAAGGAACCGGAAACCCTCTTCGTTTGTTGATCTAAATATACAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000560518.1 |
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| CDS TCA 72 bp | CATCCACTGACTCTTGTAGAAAAATGTCCCATCTCCTaGAACAAACCGAAGAGCGTCGGGAACGTTCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: HPLTLVEKCPIS*NKPKSVGNVPR Trigger: ACGCGGAACGTTCCCGACGCTCTTCGGTTTGTTTCAGGAGATGGGACATTTTTCTACAAGAGTCAGTGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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| CDS CCA 72 bp | AGATCACATAGGAGGGAAAAAGGAGAAGGCTTGAGTTaGATCATCCACACCAAAGTCCAGAGCACTAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RSHRREKGEGLS*IIHTKVQSTRE Trigger: CTCCCTAGTGCTCTGGACTTTGGTGTGGATGATCCAACTCAAGCCTTCTCCTTTTTCCCTCCTATGTGATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CAA 90 bp | GCACCCAAGATTCTGCTTGGCGATGTTCTCGCAGCATCTGTAACTTaGATCTGCCTTCTCATTCTCTGCACAAACGCATGCAAGATCACA | + |
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Preference number: 6 (lower is better) Translates to: APKILLGDVLAASVT*ICLLILCTNACKIT Trigger: TGTGATCTTGCATGCGTTTGTGCAGAGAATGAGAAGGCAGATCAAAGTTACAGATGCTGCGAGAACATCGCCAAGCAGAATCTTGGGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS GCA 72 bp | GGATTAAACAAGTGCAAATTAAAGCACTTAGAACAGTaGCTCTCACACTTCAGGCGCTTGCGGAGAGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: GLNKCKLKHLEQ*LSHFRRLRRGD Trigger: ATCCCCTCTCCGCAAGCGCCTGAAGTGTGAGAGGCACTGTTCTAAGTGCTTTAATTTGCACTTGTTTAATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS GCA 72 bp | CTTGGCGATGTTCTCGCAGCATCTGTAACTTTGATCTaGCTTCTCATTCTCTGCACAAACGCATGCAAGATC | + |
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Preference number: 6 (lower is better) Translates to: LGDVLAASVTLI*LLILCTNACKI Trigger: GATCTTGCATGCGTTTGTGCAGAGAATGAGAAGGCAGATCAAAGTTACAGATGCTGCGAGAACATCGCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000559779.2 ENST00000560518.1 |
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| CDS CAA 90 bp | ACTTACCTCTTCATAGCAGTTTGTTTCCTTGAATGCTCTGCAGTTTaGTTTCATTTTCCTATGCGCTTCCATGGGCCTTCTACGAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: TYLFIAVCFLECSAV*FHFPMRFHGPSTSF Trigger: AAAGCTCGTAGAAGGCCCATGGAAGCGCATAGGAAAATGAAACAAAACTGCAGAGCATTCAAGGAAACAAACTGCTATGAAGAGGTAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654724.1 |
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| CDS CAA 72 bp | TTCATAGCAGTTTGTTTCCTTGAATGCTCTGCAGTTTaGTTTCATTTTCCTATGCGCTTCCATGGGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FIAVCFLECSAV*FHFPMRFHGPS Trigger: AGAAGGCCCATGGAAGCGCATAGGAAAATGAAACAAAACTGCAGAGCATTCAAGGAAACAAACTGCTATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654724.1 |
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| CDS TCA 72 bp | GTGGTACTTCTACTTCTTGGCGTAGCCAAGTATTTTTaGAATCCTAAAGCCCCATTCGAATTCTTGTATACT | + |
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Preference number: 6 (lower is better) Translates to: VVLLLLGVAKYF*NPKAPFEFLYT Trigger: AGTATACAAGAATTCGAATGGGGCTTTAGGATTTCAAAAATACTTGGCTACGCCAAGAAGTAGAAGTACCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000559779.2 ENST00000560518.1 ENST00000654724.1 |
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