Pregenerated sensors for CEP170 (Homo sapiens)
Ensembl gene IDs: ENSG00000143702Ensembl transcript IDs: ENST00000366542.6, ENST00000366543.5, ENST00000366544.5, ENST00000450306.5, ENST00000461671.1, ENST00000522191.5, ENST00000522522.5, ENST00000522995.1, ENST00000523424.5, ENST00000523581.1, ENST00000612450.4, ENST00000621831.4, ENST00000625552.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACAGGCTACTTGGCTAGCCACTGCAGGGGATTACAAAATCTGTATGACAGTCTTAGATGTGCCTTCCTCTaGGTGGTGAAATCCAGATGT | + |
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Preference number: 4 (lower is better) Translates to: TGYLASHCRGLQNLYDSLRCAFL*VVKSRC Trigger: ACATCTGGATTTCACCACTCAGAGGAAGGCACATCT...AAGACTGTCATACAGATTTTGTAATCCCCTGCAGTGGCTAGCCAAGTAGCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000461671.1 |
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| CDS-3UTR GCA 90 bp | TACTTGGCTAGCCACTGCAGGGGATTACAAAATCTGTATGACAGTCTTTGCTTTTTCCAGATGAAGATGTaGCTTCCTCTGAGTGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: YLASHCRGLQNLYDSLCFFQMKM*LPLSGE Trigger: TTCACCACTCAGAGGAAGGCACATCTTCATCTGGAA...AAAGCAAAGACTGTCATACAGATTTTGTAATCCCCTGCAGTGGCTAGCCAAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000461671.1 |
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| CDS-3UTR GCA 90 bp | TACTTGGCTAGCCACTGCAGGGGATTACAAAATCTGTATGACAGTCTTTGCTTTTACTTGGCTAGCCACTaGAGGGGATTACAAAATCTG | + |
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Preference number: 4 (lower is better) Translates to: YLASHCRGLQNLYDSLCFYLASH*RGLQNL Trigger: CAGATTTTGTAATCCCCTGCAGTGGCTAGCCAAGTA...AAAGCAAAGACTGTCATACAGATTTTGTAATCCCCTGCAGTGGCTAGCCAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENST00000461671.1 |
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| CDS GCA 90 bp | CCACCTCGTCGTCGTCGTCGTCGCCGCTGTTGTCGTCGCTGCCGCTaGGGTCGAGCTCCGGGGCCCTCAGCTCCGCTGGGCAATAACGTT | + |
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Preference number: 5 (lower is better) Translates to: PPRRRRRRRCCRRCR*GRAPGPSAPLGNNV Trigger: AACGTTATTGCCCAGCGGAGCTGAGGGCCCCGGAGCTCGACCGCAGCGGCAGCGACGACAACAGCGGCGACGACGACGACGACGAGGTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522522.5 ENST00000522995.1 ENST00000523581.1 ENST00000625552.1 |
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| CDS GCA 90 bp | TATTCCACACACGCCCCACACATAGCGGTAACGGCAAAGACCGACTaGCTAGTGCGCAGGCGCCTCGGGAAAGGGCGAGGAGCCGGACCC | + |
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Preference number: 5 (lower is better) Translates to: YSTHAPHIAVTAKTD*LVRRRLGKGRGAGP Trigger: GGGTCCGGCTCCTCGCCCTTTCCCGAGGCGCCTGCGCACTAGGCAGTCGGTCTTTGCCGTTACCGCTATGTGTGGGGCGTGTGTGGAATA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522995.1 |
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| CDS CCA 90 bp | GTCGTCGCTGCCGCTGCGGTCGAGCTCCGGGGCCCTCAGCTCCGCTaGGCAATAACGTTATTCCACACACGCCCCACACATAGCGGTAAC | + |
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Preference number: 5 (lower is better) Translates to: VVAAAAVELRGPQLR*AITLFHTRPTHSGN Trigger: GTTACCGCTATGTGTGGGGCGTGTGTGGAATAACGTTATTGCCCAGCGGAGCTGAGGGCCCCGGAGCTCGACCGCAGCGGCAGCGACGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522995.1 |
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| CDS-3UTR CAA 90 bp | CAGGCTACTTGGCTAGCCACTGCAGGGGATTACAAAATCTGTATGACAGTCTTTGAAGAGGCTGTCACCTaGTCAATCATTTTTCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: QATWLATAGDYKICMTVFEEAVT*SIIFLA Trigger: AGCAAGAAAAATGATTGACAAGGTGACAGCCTCTTC...AAAGACTGTCATACAGATTTTGTAATCCCCTGCAGTGGCTAGCCAAGTAGCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000461671.1 |
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| CDS GCA 72 bp | CGTCGTCGTCGTCGCCGCTGTTGTCGTCGCTGCCGCTaGGGTCGAGCTCCGGGGCCCTCAGCTCCGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: RRRRRRCCRRCR*GRAPGPSAPLG Trigger: GCCCAGCGGAGCTGAGGGCCCCGGAGCTCGACCGCAGCGGCAGCGACGACAACAGCGGCGACGACGACGACG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522522.5 ENST00000522995.1 ENST00000523581.1 ENST00000625552.1 |
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| CDS GCA 72 bp | CCTCGTCGTCGTCGTCGTCGCCGCTGTTGTCGTCGCTaGCGCTGCGGTCGAGCTCCGGGGCCCTCAGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: PRRRRRRRCCRR*RCGRAPGPSAP Trigger: CGGAGCTGAGGGCCCCGGAGCTCGACCGCAGCGGCAGCGACGACAACAGCGGCGACGACGACGACGACGAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522522.5 ENST00000522995.1 ENST00000523581.1 ENST00000625552.1 |
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| CDS GCA 72 bp | TCGGGAAAGGGCGAGGAGCCGGACCCTATCCCCTCCTaGCCAGTTCCAACGATCCCTTACTGCGCAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: SGKGEEPDPIPS*PVPTIPYCAGA Trigger: GGCGCCTGCGCAGTAAGGGATCGTTGGAACTGGGCAGGAGGGGATAGGGTCCGGCTCCTCGCCCTTTCCCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522995.1 |
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| CDS CCA 72 bp | GCCGCTGCGGTCGAGCTCCGGGGCCCTCAGCTCCGCTaGGCAATAACGTTATTCCACACACGCCCCACACAT | + |
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Preference number: 6 (lower is better) Translates to: AAAVELRGPQLR*AITLFHTRPTH Trigger: ATGTGTGGGGCGTGTGTGGAATAACGTTATTGCCCAGCGGAGCTGAGGGCCCCGGAGCTCGACCGCAGCGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522522.5 ENST00000522995.1 ENST00000625552.1 |
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| CDS GCA 72 bp | TCATTTCTCGTGGCAGCCTGTGGCGAGTGCCTCCACTaGTCACCAAAAACCAGGATGTTAAGCTCATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SFLVAACGECLH*SPKTRMLSSFS Trigger: AGAAAATGAGCTTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACTCGCCACAGGCTGCCACGAGAAATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 12 transcripts: ENST00000366542.6 ENST00000366543.5 ENST00000366544.5 ENST00000450306.5 ENST00000522191.5 ENST00000522522.5 ENST00000522995.1 ENST00000523424.5 ENST00000523581.1 ENST00000612450.4 ENST00000621831.4 ENST00000625552.1 |
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