Pregenerated sensors for CDX4 (Homo sapiens)
Ensembl gene IDs: ENSG00000131264Ensembl transcript IDs: ENST00000373514.2, ENST00000373514.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGCATCCATCTGTTCCAAATACTGCCTTACAGGGAATTACACCCTaGTCCAACTCCCCTGTAGATAGCTTAGAGACCCAAAAGACATCA | + |
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Preference number: 1 (lower is better) Translates to: VHPSVPNTALQGITP*SNSPVDSLETQKTS Trigger: TGATGTCTTTTGGGTCTCTAAGCTATCTACAGGGGAGTTGGAGCAGGGTGTAATTCCCTGTAAGGCAGTATTTGGAACAGATGGATGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTCCCCTAAATTATCTTCAACCCATTGTGCATCCATCTGTTCCAAATACTGCCAGGGAATTACACCCTaGTCCAACTCCCCTGTAGAT | + |
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Preference number: 2 (lower is better) Translates to: ESPKLSSTHCASICSKYCQGITP*SNSPVD Trigger: ATCTACAGGGGAGTTGGAGCAGGGTGTAATTCCCTG...GCAGTATTTGGAACAGATGGATGCACAATGGGTTGAAGATAATTTAGGGGACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.2 |
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| 3UTR GCA 72 bp | TCTTCAACCCATTGTGCATCCATCTGTTCCAAATACTaGCTTACAGGGAATTACACCCTGCTCCAACTCCCC | + |
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Preference number: 3 (lower is better) Translates to: SSTHCASICSKY*LTGNYTLLQLP Trigger: GGGGAGTTGGAGCAGGGTGTAATTCCCTGTAAGGCAGTATTTGGAACAGATGGATGCACAATGGGTTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373514.2 |
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| 3UTR GCA 72 bp | TCTGTTCCAAATACTGCCTTACAGGGAATTACACCCTaGTCCAACTCCCCTGTAGATAGCTTAGAGACCCAA | + |
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Preference number: 3 (lower is better) Translates to: SVPNTALQGITP*SNSPVDSLETQ Trigger: TTGGGTCTCTAAGCTATCTACAGGGGAGTTGGAGCAGGGTGTAATTCCCTGTAAGGCAGTATTTGGAACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.2 |
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| 3UTR TCA 72 bp | CTTTTAATTATATACCTTACCACTAAGATTCCTGAGTaGCTGACATATAGCACAGCACGTGACAGGAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: LLIIYLTTKIPE*LTYSTARDRSF Trigger: AAAACTCCTGTCACGTGCTGTGCTATATGTCAGTCACTCAGGAATCTTAGTGGTAAGGTATATAATTAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.2 |
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| CDS CCA 90 bp | GCCTTGGCGGCGCCTGCGTCCGTCGGGACAAGCGACCCGCCAGCCTaGCCTGGTAGGCTGCTGCCGCTAGTTCCACCGCCCACAGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: ALAAPASVGTSDPPA*PGRLLPLVPPPTGP Trigger: GGGCCCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 90 bp | TCCATGCATAGGGGCTGTGGCGGCTCCTGCTGGGGGAACTGGCCTTaGCGGCGCCTGCGTCCGTCGGGACAAGCGACCCGCCAGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SMHRGCGGSCWGNWP*RRLRPSGQATRQPG Trigger: GCCAGGCTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 90 bp | TGCGCATCCATGCATAGGGGCTGTGGCGGCTCCTGCTGGGGGAACTaGCCTTGGCGGCGCCTGCGTCCGTCGGGACAAGCGACCCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CASMHRGCGGSCWGN*PWRRLRPSGQATRQ Trigger: CTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 90 bp | GCACCGTCTTGCGCATCCATGCATAGGGGCTGTGGCGGCTCCTGCTaGGGGAACTGGCCTTGGCGGCGCCTGCGTCCGTCGGGACAAGCG | + |
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Preference number: 5 (lower is better) Translates to: APSCASMHRGCGGSC*GNWPWRRLRPSGQA Trigger: CGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGGTGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 90 bp | CCTGCACCGTCTTGCGCATCCATGCATAGGGGCTGTGGCGGCTCCTaGTGGGGGAACTGGCCTTGGCGGCGCCTGCGTCCGTCGGGACAA | + |
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Preference number: 5 (lower is better) Translates to: PAPSCASMHRGCGGS*WGNWPWRRLRPSGQ Trigger: TTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGGTGCAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS TCA 90 bp | CGGCCCAGGATACACGCTCCAGTCTTCTCGCGGGGGACTGTAGGGTaGGCCCCAGACTCCCAGAGACGGCCAGTGAGGATCCATGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RPRIHAPVFSRGTVG*APDSQRRPVRIHAG Trigger: CCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCTCACCCTACAGTCCCCCGCGAGAAGACTGGAGCGTGTATCCTGGGCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 90 bp | CCCCATATAGTGCGAGAAAGCCGGTGCCGCAGCGAAATTGGAGGCTaGCATCGGACTCCCACCGCCCCCTGTGCCGCCTGTCCCAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: PHIVRESRCRSEIGG*HRTPTAPCAACPSC Trigger: ACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGCACCGGCTTTCTCGCACTATATGGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 90 bp | CATGCTGGGCATATGAGGATACCCCATATAGTGCGAGAAAGCCGGTaGCGCAGCGAAATTGGAGGCTGGCATCGGACTCCCACCGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: HAGHMRIPHIVRESR*RSEIGGWHRTPTAP Trigger: GGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGCACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 90 bp | AGGGTGAGCCCCAGACTCCCAGAGACGGCCAGTGAGGATCCATGCTaGGCATATGAGGATACCCCATATAGTGCGAGAAAGCCGGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: RVSPRLPETASEDPC*AYEDTPYSARKPVP Trigger: CGGCACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCTCACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 90 bp | TGTGCCGTCGCCCCCAGGGCTCATGAGAGTGCCCGGGTACATGCCTaGTTCTTTCTCCAAAAGACAGCTTCCGTACATCGTGTCTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: CAVAPRAHESARVHA*FFLQKTASVHRVLG Trigger: ACCCAAGACACGATGTACGGAAGCTGTCTTTTGGAGAAAGAAGCAGGCATGTACCCGGGCACTCTCATGAGCCCTGGGGGCGACGGCACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 90 bp | TGTAGGGTGAGCCCCAGACTCCCAGAGACGGCCAGTGAGGATCCATaGTGGGCATATGAGGATACCCCATATAGTGCGAGAAAGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: CRVSPRLPETASEDP*WAYEDTPYSARKPV Trigger: CACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCTCACCCTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 72 bp | GCGGCTCCTGCTGGGGGAACTGGCCTTGGCGGCGCCTaGGTCCGTCGGGACAAGCGACCCGCCAGCCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: AAPAGGTGLGGA*VRRDKRPASLA Trigger: GGCCAGGCTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | AGGGGCTGTGGCGGCTCCTGCTGGGGGAACTGGCCTTaGCGGCGCCTGCGTCCGTCGGGACAAGCGACCCGC | + |
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Preference number: 6 (lower is better) Translates to: RGCGGSCWGNWP*RRLRPSGQATR Trigger: GCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCT 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | GCGCCTGCGTCCGTCGGGACAAGCGACCCGCCAGCCTaGCCTGGTAGGCTGCTGCCGCTAGTTCCACCGCCC | + |
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Preference number: 6 (lower is better) Translates to: APASVGTSDPPA*PGRLLPLVPPP Trigger: GGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGACGCAGGCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 72 bp | AATTGGAGGCTGGCATCGGACTCCCACCGCCCCCTGTaGCGCCTGTCCCAGCTGTGCCGTCGCCCCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: NWRLASDSHRPL*RLSQLCRRPQG Trigger: GCCCTGGGGGCGACGGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | ATGCATAGGGGCTGTGGCGGCTCCTGCTGGGGGAACTaGCCTTGGCGGCGCCTGCGTCCGTCGGGACAAGCG | + |
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Preference number: 6 (lower is better) Translates to: MHRGCGGSCWGN*PWRRLRPSGQA Trigger: CGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCAT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | TGCGCATCCATGCATAGGGGCTGTGGCGGCTCCTGCTaGGGGAACTGGCCTTGGCGGCGCCTGCGTCCGTCG | + |
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Preference number: 6 (lower is better) Translates to: CASMHRGCGGSC*GNWPWRRLRPS Trigger: CGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | GTGCGAGAAAGCCGGTGCCGCAGCGAAATTGGAGGCTaGCATCGGACTCCCACCGCCCCCTGTGCCGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VRESRCRSEIGG*HRTPTAPCAAC Trigger: ACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGCACCGGCTTTCTCGCAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS TCA 72 bp | CGCCTGTCCCAGCTGTGCCGTCGCCCCCAGGGCTCATaGGAGTGCCCGGGTACATGCCTGCTTCTTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RLSQLCRRPQGS*ECPGTCLLLSP Trigger: TGGAGAAAGAAGCAGGCATGTACCCGGGCACTCTCATGAGCCCTGGGGGCGACGGCACAGCTGGGACAGGCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS TCA 72 bp | ATACACGCTCCAGTCTTCTCGCGGGGGACTGTAGGGTaGGCCCCAGACTCCCAGAGACGGCCAGTGAGGATC | + |
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Preference number: 6 (lower is better) Translates to: IHAPVFSRGTVG*APDSQRRPVRI Trigger: GATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCTCACCCTACAGTCCCCCGCGAGAAGACTGGAGCGTGTAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 72 bp | CATATGAGGATACCCCATATAGTGCGAGAAAGCCGGTaGCGCAGCGAAATTGGAGGCTGGCATCGGACTCCC | + |
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Preference number: 6 (lower is better) Translates to: HMRIPHIVRESR*RSEIGGWHRTP Trigger: GGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGCACCGGCTTTCTCGCACTATATGGGGTATCCTCATATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 72 bp | AGCCCCAGACTCCCAGAGACGGCCAGTGAGGATCCATaGTGGGCATATGAGGATACCCCATATAGTGCGAGA | + |
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Preference number: 6 (lower is better) Translates to: SPRLPETASEDP*WAYEDTPYSAR Trigger: TCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CCA 72 bp | CCCAGACTCCCAGAGACGGCCAGTGAGGATCCATGCTaGGCATATGAGGATACCCCATATAGTGCGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PRLPETASEDPC*AYEDTPYSARK Trigger: CTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGAGTCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS GCA 72 bp | GGTAGTTCCCCAGGGCTGATGGAGTCAGAGTCACTTTaGACCGAGCCTCCACTATTCTCAAACTGGGAGATT | + |
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Preference number: 6 (lower is better) Translates to: GSSPGLMESESL*TEPPLFSNWEI Trigger: AATCTCCCAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGACTCCATCAGCCCTGGGGAACTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CAA 90 bp | CATGCCTGCTTCTTTCTCCAAAAGACAGCTTCCGTACATCGTGTCTaGGGTAGAAGGCGCTCCCTAAGCCATCCTGAAGTCCCTGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: HACFFLQKTASVHRV*GRRRSLSHPEVPVR Trigger: CCTTACAGGGACTTCAGGATGGCTTAGGGAGCGCCTTCTACCCAAGACACGATGTACGGAAGCTGTCTTTTGGAGAAAGAAGCAGGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CAA 72 bp | TTCTTTCTCCAAAAGACAGCTTCCGTACATCGTGTCTaGGGTAGAAGGCGCTCCCTAAGCCATCCTGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: FFLQKTASVHRV*GRRRSLSHPEV Trigger: GACTTCAGGATGGCTTAGGGAGCGCCTTCTACCCAAGACACGATGTACGGAAGCTGTCTTTTGGAGAAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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| CDS CAA 72 bp | TCATTCGGAGACTATAACCTGCTGTATCTCAATAGGTaGAAATCCACGAACAGCAGATGGTGTGGTGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: SFGDYNLLYLNR*KSTNSRWCGEK Trigger: TTTTTCACCACACCATCTGCTGTTCGTGGATTTCAACCTATTGAGATACAGCAGGTTATAGTCTCCGAATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373514.3 |
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