Pregenerated sensors for CDKN2AIPNL (Homo sapiens)
Ensembl gene IDs: ENSG00000237190Ensembl transcript IDs: ENST00000395009.3, ENST00000458198.3
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCTTTGTCCTTTTaGTGCTGCAGCCAGGATGAAGTGGGCTTTGAGACCTTCACAAAA | + |
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Preference number: 1 (lower is better) Translates to: KECLIRHFKSGPLSF*CCSQDEVGFETFTK Trigger: TTTTGTGAAGGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR-3UTR CCA 90 bp | CCAATATGTGAAGCAAAACCAAGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGGGGCCTTTGTCCTTTTaGTGCTGCAGCCAGGATGAA | + |
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Preference number: 2 (lower is better) Translates to: PICEAKPSGLGLQGPNDQGPLSF*CCSQDE Trigger: TTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCC...CTGGTCATTTGGCCCCTGCAGGCCTAAGCCACTTGGTTTTGCTTCACATATTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR-3UTR GCA 90 bp | AACACAATTTCAGGAAAATCGAAGCTCTCTAATAGGGAGTCTCAAGATTTGCCACCTTTGTCCTTTTGGTaGTGCAGCCAGGATGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: NTISGKSKLSNRESQDLPPLSFW*CSQDEV Trigger: CACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGG...TGGCAAATCTTGAGACTCCCTATTAGAGAGCTTCGATTTTCCTGAAATTGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR-3UTR CAA 90 bp | AGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGAGTCAGGCAGCCATAATAGGTAGGGAGTCTCAAGATTaGCCACCTTCCTCATGGAGG | + |
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Preference number: 3 (lower is better) Translates to: SGLGLQGPNDQSQAAIIGRESQD*PPSSWR Trigger: CCTCCATGAGGAAGGTGGCAAATCTTGAGACTCCCT...ACCTATTATGGCTGCCTGACTCTGGTCATTTGGCCCCTGCAGGCCTAAGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR GCA 72 bp | AGGCACTTCAAAAGCGGGCCTTTGTCCTTTTGGTGCTaGAGCCAGGATGAAGTGGGCTTTGAGACCTTCACA | + |
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Preference number: 3 (lower is better) Translates to: RHFKSGPLSFWC*SQDEVGFETFT Trigger: TGTGAAGGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR GCA 72 bp | ATCAGGCACTTCAAAAGCGGGCCTTTGTCCTTTTGGTaGTGCAGCCAGGATGAAGTGGGCTTTGAGACCTTC | + |
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Preference number: 3 (lower is better) Translates to: IRHFKSGPLSFW*CSQDEVGFETF Trigger: GAAGGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR CCA 72 bp | CTTATCAGGCACTTCAAAAGCGGGCCTTTGTCCTTTTaGTGCTGCAGCCAGGATGAAGTGGGCTTTGAGACC | + |
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Preference number: 3 (lower is better) Translates to: LIRHFKSGPLSF*CCSQDEVGFET Trigger: GGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGATAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR-3UTR CAA 90 bp | CTTCCTCATGGAGGGGTGAAAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCAGGATGAAGTGGGCTTaGAGACCTTCACAAAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: LPHGGVKGMPYQALQKRARMKWA*RPSQKG Trigger: GCCTTTTTGTGAAGGTCTCAAAGCCCACTTCATCCT...GGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTTTCACCCCTCCATGAGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR-3UTR CAA 90 bp | ATATGTGAAGCAAAACCAAGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGAGTTTCAAAAGCGGGCCTTaGTCCTTTTGGTGCTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: ICEAKPSGLGLQGPNDQSFKSGP*SFWCCS Trigger: GCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAA...ACTCTGGTCATTTGGCCCCTGCAGGCCTAAGCCACTTGGTTTTGCTTCACATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR TCA 72 bp | GGAGTCTCAAGATTTGCCACCTTCCTCATGGAGGGGTaGAAGGAATGCCTTATCAGGCACTTCAAAAGCGGG | + |
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Preference number: 3 (lower is better) Translates to: GVSRFATFLMEG*KECLIRHFKSG Trigger: CCCGCTTTTGAAGTGCCTGATAAGGCATTCCTTTCACCCCTCCATGAGGAAGGTGGCAAATCTTGAGACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR TCA 72 bp | AGCAAAACCAAGTGGCTTAGGCCTGCAGGGGCCAAATaGCCAGAGTCAGGCAGCCATAATAGGTATAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: SKTKWLRPAGAK*PESGSHNRYRN Trigger: GTTTCTATACCTATTATGGCTGCCTGACTCTGGTCATTTGGCCCCTGCAGGCCTAAGCCACTTGGTTTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| 3UTR GCA 72 bp | AAAAACCCTGAAAATATGAGCCCAGGAGTTCGAGGCTaGAATGAGCCAATACTGCACCTTTGTGCTTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: KNPENMSPGVRG*NEPILHLCASA Trigger: GGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAACTCCTGGGCTCATATTTTCAGGGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | CCTCATGGAGGGGTGAAAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCTTTCGCCACCGACCATGGTaGCCGCCGCAGCCGAGGACC | + |
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Preference number: 4 (lower is better) Translates to: PHGGVKGMPYQALQKRAFRHRPW*PPQPRT Trigger: GGTCCTCGGCTGCGGCGGGCACCATGGTCGGTGGCG...AAAGGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTTTCACCCCTCCATGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | GGTGCTGCAGCCAGGATGAAGTGGGCTTTGAGACCTTCACAAAAAGGCATCGGCAACCAGCTCCTCCACTaGGGCAGCCGCCTCGCCACC | + |
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Preference number: 4 (lower is better) Translates to: GAAARMKWALRPSQKGIGNQLLH*GSRLAT Trigger: GGTGGCGAGGCGGCTGCCGCAGTGGAGGAGCTGGTT...GCCGATGCCTTTTTGTGAAGGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | GTTCGAGGCTGCAATGAGCCAATACTGCACCTTTGTGCTTCTGCCTGGGCGACAAACCAGCTCCTCCACTaGGGCAGCCGCCTCGCCACC | + |
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Preference number: 4 (lower is better) Translates to: VRGCNEPILHLCASAWATNQLLH*GSRLAT Trigger: GGTGGCGAGGCGGCTGCCGCAGTGGAGGAGCTGGTT...TGTCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | CCAATATGTGAAGCAAAACCAAGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGGCGAAGTCGGCCGCCTaGCGCACCCCCGAAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: PICEAKPSGLGLQGPNDQAKSAA*RTPETS Trigger: GCTGGTTTCGGGGGTGCGGCAGGCGGCCGACTTCGC...CTGGTCATTTGGCCCCTGCAGGCCTAAGCCACTTGGTTTTGCTTCACATATTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAGCTGCTGTGGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGCGCCACCGACCATGGTaGCCGCCGCAGCCGAGGACC | + |
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Preference number: 4 (lower is better) Translates to: KRAAVVYVTFIPASFLILRHRPW*PPQPRT Trigger: GGTCCTCGGCTGCGGCGGGCACCATGGTCGGTGGCG...CAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR CCA 90 bp | AGAAGGCAGGGAAAAGGGACGGGTGCCTCTGGCATTGCTTCCCTACGTACTGTTAGGGACGGGTGCCTCTaGCATTGCTTCCCTACGTAC | + |
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Preference number: 4 (lower is better) Translates to: RRQGKGTGASGIASLRTVRDGCL*HCFPTY Trigger: GTACGTAGGGAAGCAATGCCAGAGGCACCCGTCCCT...AACAGTACGTAGGGAAGCAATGCCAGAGGCACCCGTCCCTTTTCCCTGCCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | GAGTTCGAGGCTGCAATGAGCCAATACTGCACCTTTGTGCTTCTGCCTGGGCGATCGCCCAGGATGGAGTaGAATGGTGCGATCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: EFEAAMSQYCTFVLLPGRSPRME*NGAILA Trigger: AGCCAAGATCGCACCATTGCACTCCATCCTGGGCGA...TCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | AGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGAGTCAGGCAGCCATAATAGGTGGGTGCCTCTGGCATTaGTTCCCTACGTACTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SGLGLQGPNDQSQAAIIGGCLWH*FPTYCS Trigger: AGAACAGTACGTAGGGAAGCAATGCCAGAGGCACCC...ACCTATTATGGCTGCCTGACTCTGGTCATTTGGCCCCTGCAGGCCTAAGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | GTTCGAGGCTGCAATGAGCCAATACTGCACCTTTGTGCTTCTGCCTGGGCGACAGGGCATAAGCCACTGTaGCCAGCCCAAAAAGGCATT | + |
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Preference number: 4 (lower is better) Translates to: VRGCNEPILHLCASAWATGHKPL*PAQKGI Trigger: AATGCCTTTTTGGGCTGGGCACAGTGGCTTATGCCC...TGTCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | GTTCGAGGCTGCAATGAGCCAATACTGCACCTTTGTGCTTCTGCCTGGGCGACAAATACTGCACCTTTGTaGTTCTGCCTGGGCGACAGA | + |
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Preference number: 4 (lower is better) Translates to: VRGCNEPILHLCASAWATNTAPL*FCLGDR Trigger: TCTGTCGCCCAGGCAGAAGCACAAAGGTGCAGTATT...TGTCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| 3UTR CAA 72 bp | AAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCTTaGTCCTTTTGGTGCTGCAGCCAGGATGAAGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: KECLIRHFKSGP*SFWCCSQDEVG Trigger: GCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | AAGAGAGCTGCTGTGGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGACTCCTAACCTCAGGTaGTCTGCTCACCTCGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KRAAVVYVTFIPASFLILTPNLR*SAHLGL Trigger: GAGGCCGAGGTGAGCAGATCACCTGAGGTTAGGAGT...CAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | AGGCACTTCAAAAGCGGGCCTTTGTCCTTTTGGTGCTGCAGCCAGGATGAAGTGCCTTTGTCCTTTTGGTaGTGCAGCCAGGATGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: RHFKSGPLSFWCCSQDEVPLSFW*CSQDEV Trigger: CACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGG...CACTTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | ATATGTGAAGCAAAACCAAGTGGCTTAGGCCTGCAGGGGCCAAATGACCAGAGTGGGAGTCTCAAGATTTaGCACCTTCCTCATGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: ICEAKPSGLGLQGPNDQSGSLKI*HLPHGG Trigger: CCCTCCATGAGGAAGGTGGCAAATCTTGAGACTCCC...ACTCTGGTCATTTGGCCCCTGCAGGCCTAAGCCACTTGGTTTTGCTTCACATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCTTTGTCCTTTTGGTGCTGTTGTCCTTTTGGTGCTaGAGCCAGGATGAAGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: KGMPYQALQKRAFVLLVLLSFWC*SQDEVG Trigger: GCCCACTTCATCCTGGCTGCAGCACCAAAAGGACAA...CAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | AGCTCTCTAATAGGGAGTCTCAAGATTTGCCACCTTCCTCATGGAGGGGTGAAATTCCTCATGGAGGGGTaGAAGGAATGCCTTATCAGG | + |
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Preference number: 4 (lower is better) Translates to: SSLIGSLKICHLPHGGVKFLMEG*KECLIR Trigger: CCTGATAAGGCATTCCTTTCACCCCTCCATGAGGAA...TTTCACCCCTCCATGAGGAAGGTGGCAAATCTTGAGACTCCCTATTAGAGAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | TGCCTTATCAGGCACTTCAAAAGCGGGCCTTTGTCCTTTTGGTGCTGCAGCCAGATTTCCCCAATTCTCTaGCATTTGCCTAACCATGGA | + |
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Preference number: 4 (lower is better) Translates to: CLIRHFKSGPLSFWCCSQISPIL*HLPNHG Trigger: TCCATGGTTAGGCAAATGTCAGAGAATTGGGGAAAT...CTGGCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAAGTGCCTGATAAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | GTTCGAGGCTGCAATGAGCCAATACTGCACCTTTGTGCTTCTGCCTGGGCGACACTGACGTTTAAAAACTaGAAATATATCGCGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: VRGCNEPILHLCASAWATLTFKN*KYIAPL Trigger: CAGTGGCGCGATATATTTTCAGTTTTTAAACGTCAG...TGTCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGCTCATTGCAGCCTCGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | GGTGCTGCAGCCAGGATGAAGTGGGCTTTGAGACCTTCACAAAAAGGCATCGGCCAATTCTCTGACATTTaGCTAACCATGGAAAACCAG | + |
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Preference number: 4 (lower is better) Translates to: GAAARMKWALRPSQKGIGQFSDI*LTMENQ Trigger: CTGGTTTTCCATGGTTAGGCAAATGTCAGAGAATTG...GCCGATGCCTTTTTGTGAAGGTCTCAAAGCCCACTTCATCCTGGCTGCAGCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAGCTGCTGTGGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGCTCGGCCTCCCAAAGTaGTGGGATTATTATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: KRAAVVYVTFIPASFLILLGLPK*WDYYGH Trigger: ATGCCCATAATAATCCCAGCACTTTGGGAGGCCGAG...CAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | GATCAAACCAAGTCACCCTATTTTCCTAACACAATTTCAGGAAAATCGAAGCTCGGGAAAAGGGACGGGTaGCTCTGGCATTGCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: DQTKSPYFPNTISGKSKLGKRDG*LWHCFP Trigger: AGGGAAGCAATGCCAGAGGCACCCGTCCCTTTTCCC...GAGCTTCGATTTTCCTGAAATTGTGTTAGGAAAATAGGGTGACTTGGTTTGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAGCTGCTGTGGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGAGATGTCCGCCACCATaGCCAGCTAATTTTGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: KRAAVVYVTFIPASFLILRCPPP*PANFVC Trigger: ACAAACAAAATTAGCTGGGCATGGTGGCGGACATCT...CAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR TCA 90 bp | TGGCATTGCTTCCCTACGTACTGTTCTAATAAACCCCAATATGTGAAGCAAAACGGGAAAGCAGAGAGGTaGAGCTGGTTCCTACTTAGG | + |
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Preference number: 4 (lower is better) Translates to: WHCFPTYCSNKPQYVKQNGKAER*SWFLLR Trigger: CCTAAGTAGGAACCAGCTTCACCTCTCTGCTTTCCC...GTTTTGCTTCACATATTGGGGTTTATTAGAACAGTACGTAGGGAAGCAATGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | GGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGTAGCTGATGATGAAAAAACCCTGAAAATATaGGCCCAGGAGTTCGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GLCHIHPSLLSNPVADDEKTLKI*AQEFEA Trigger: AGCCTCGAACTCCTGGGCTCATATTTTCAGGGTTTT...TTCATCATCAGCTACAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR GCA 90 bp | GGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGTAGCTGATGATGAATTCAAGCAGTTCTTCTaGTTCAGCCTCCTGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GLCHIHPSLLSNPVADDEFKQFF*FSLLSS Trigger: GCTACTCAGGAGGCTGAAGCAGAAGAACTGCTTGAA...TTCATCATCAGCTACAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR CCA 90 bp | GGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGTAGCTGATGATGAAGGCCTCCCAAAGTGCTaGGATTATTATGGGCATAAG | + |
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Preference number: 4 (lower is better) Translates to: GLCHIHPSLLSNPVADDEGLPKC*DYYGHK Trigger: CTTATGCCCATAATAATCCCAGCACTTTGGGAGGCC...TTCATCATCAGCTACAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR CCA 90 bp | GGTATAGAAACCAAGATCAAACCAAGTCACCCTATTTTCCTAACACAATTTCAGGGGCCTTTGTCCTTTTaGTGCTGCAGCCAGGATGAA | + |
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Preference number: 4 (lower is better) Translates to: GIETKIKPSHPIFLTQFQGPLSF*CCSQDE Trigger: TTCATCCTGGCTGCAGCACCAAAAGGACAAAGGCCC...CTGAAATTGTGTTAGGAAAATAGGGTGACTTGGTTTGATCTTGGTTTCTATACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR TCA 90 bp | CAATTTCAGGAAAATCGAAGCTCTCTAATAGGGAGTCTCAAGATTTGCCACCTTATAAACCCCAATATGTaGAGCAAAACCAAGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: QFQENRSSLIGSLKICHLINPNM*SKTKWL Trigger: AAGCCACTTGGTTTTGCTTCACATATTGGGGTTTAT...AAGGTGGCAAATCTTGAGACTCCCTATTAGAGAGCTTCGATTTTCCTGAAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR CAA 90 bp | GAGCACCTAGAAGGCAGGGAAAAGGGACGGGTGCCTCTGGCATTGCTTCCCTACAGGATGAAGTGGGCTTaGAGACCTTCACAAAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: EHLEGREKGRVPLALLPYRMKWA*RPSQKG Trigger: GCCTTTTTGTGAAGGTCTCAAAGCCCACTTCATCCT...GTAGGGAAGCAATGCCAGAGGCACCCGTCCCTTTTCCCTGCCTTCTAGGTGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR CAA 90 bp | CCTCATGGAGGGGTGAAAGGAATGCCTTATCAGGCACTTCAAAAGCGGGCCTTTCGGGTGCCTCTGGCATaGCTTCCCTACGTACTGTTC | + |
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Preference number: 5 (lower is better) Translates to: PHGGVKGMPYQALQKRAFRVPLA*LPYVLF Trigger: GAACAGTACGTAGGGAAGCAATGCCAGAGGCACCCG...AAAGGCCCGCTTTTGAAGTGCCTGATAAGGCATTCCTTTCACCCCTCCATGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR CAA 90 bp | AAGAGAGCTGCTGTGGTCTATGTCACATTCATCCCAGCCTCCTTTCTAATCCTGGCCAATACTGCACCTTaGTGCTTCTGCCTGGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: KRAAVVYVTFIPASFLILANTAP*CFCLGD Trigger: GTCGCCCAGGCAGAAGCACAAAGGTGCAGTATTGGC...CAGGATTAGAAAGGAGGCTGGGATGAATGTGACATAGACCACAGCAGCTCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458198.3 |
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| CDS-3UTR CAA 90 bp | ATTTGCCTAACCATGGAAAACCAGGATTTCCCAGGAGCACCTAGAAGGCAGGGAAGGGAGTCTCAAGATTaGCCACCTTCCTCATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: ICLTMENQDFPGAPRRQGRESQD*PPSSWR Trigger: CCTCCATGAGGAAGGTGGCAAATCTTGAGACTCCCT...TCCCTGCCTTCTAGGTGCTCCTGGGAAATCCTGGTTTTCCATGGTTAGGCAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS-3UTR CAA 90 bp | CAATTTCAGGAAAATCGAAGCTCTCTAATAGGGAGTCTCAAGATTTGCCACCTTTTCAAAAGCGGGCCTTaGTCCTTTTGGTGCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QFQENRSSLIGSLKICHLFKSGP*SFWCCS Trigger: GCTGCAGCACCAAAAGGACAAAGGCCCGCTTTTGAA...AAGGTGGCAAATCTTGAGACTCCCTATTAGAGAGCTTCGATTTTCCTGAAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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| CDS TCA 72 bp | GCATCGGCCATTTTCATAAGAGGGAAAGCAGAGAGGTaGAGCTGGTTCCTACTTAGGACCCCGTGGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: ASAIFIRGKAER*SWFLLRTPWAA Trigger: TGCAGCCCACGGGGTCCTAAGTAGGAACCAGCTTCACCTCTCTGCTTTCCCTCTTATGAAAATGGCCGATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000395009.3 |
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