RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDKL2 (Homo sapiens)

Ensembl gene IDs: ENSG00000138769

Ensembl transcript IDs: ENST00000307465.9, ENST00000429927.6, ENST00000506234.1, ENST00000515793.1

Found 272 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGCAGTTCAGAAGGAAATGATCAAAACCATGAATCTCTCCTCTTaGGATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGC +
Preference number: 1 (lower is better)
Translates to: QAVQKEMIKTMNLSS*DISTLAARRCHLKC
Trigger: GCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATATCCCAAGAGGAGAGATTCATGGTTTTGATCATTTCCTTCTGAACTGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTaGTTCTTAGAAGATCTGCAGGGAGGCCAGAGTCTCATAATACAC +
Preference number: 1 (lower is better)
Translates to: SKSFERGFSVTLALV*FLEDLQGGQSLIIH
Trigger: GTGTATTATGAGACTCTGGCCTCCCTGCAGATCTTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR GCA 90 bp AATGATCAAAACCATGAATCTCTCCTCTTGGGATATCAGCACTCTTaGTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTT +
Preference number: 1 (lower is better)
Translates to: NDQNHESLLLGYQHS*CKKMSSQVQEHHPV
Trigger: AACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATATCCCAAGAGGAGAGATTCATGGTTTTGATCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR TCA 90 bp CTGGGTAGTTCAATAGCAATTGGTCCACAGAAGAGTAATCAGTCCTaGTCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACA +
Preference number: 1 (lower is better)
Translates to: LGSSIAIGPQKSNQS*SILYGALAPESYNT
Trigger: TGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGACTGATTACTCTTCTGTGGACCAATTGCTATTGAACTACCCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR TCA 90 bp ACATTGAAACCCCTTATTTGCCTCCTCTTGAATGTCCTACTCTTTTaGGGCTTAAATATCCAAGGTCAGAATTTCAGTATTAAGCTCCTC +
Preference number: 1 (lower is better)
Translates to: TLKPLICLLLNVLLF*GLNIQGQNFSIKLL
Trigger: GAGGAGCTTAATACTGAAATTCTGACCTTGGATATTTAAGCCTCAAAAGAGTAGGACATTCAAGAGGAGGCAAATAAGGGGTTTCAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR GCA 90 bp TATGACCATGCTGCTTATATCACCAGCTATACAAGAAAATTAGCTTaGCATCCCTACATCCAAAGTTTTCCAGAAGAATTAACAGATTTA +
Preference number: 1 (lower is better)
Translates to: YDHAAYITSYTRKLA*HPYIQSFPEELTDL
Trigger: TAAATCTGTTAATTCTTCTGGAAAACTTTGGATGTAGGGATGGCAAGCTAATTTTCTTGTATAGCTGGTGATATAAGCAGCATGGTCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR CAA 90 bp GCAGGCAGTTCAGAAGGAAATGATCAAAACCATGAATCTCTCCTCTaGGGATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTG +
Preference number: 2 (lower is better)
Translates to: AGSSEGNDQNHESLL*GYQHSCCKKMSSQV
Trigger: CACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATATCCCAAGAGGAGAGATTCATGGTTTTGATCATTTCCTTCTGAACTGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCACACACAAAGTTCAATaGATGAGTAACATGGCCTTT +
Preference number: 2 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFTHKVQ*MSNMAF
Trigger: AAAGGCCATGTTACTCATGCATTGAACTTTGTGTGT...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR CAA 90 bp TCGGTGGACGTGAAAGGTAATGGGATAACAGTTGGGGAGGGCCATTaGTTCAATCTTCCTTTGAAACATTTGGAAGTCTTTGTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: SVDVKGNGITVGEGH*FNLPLKHLEVFVFP
Trigger: AGGAAAGACAAAGACTTCCAAATGTTTCAAAGGAAGATTGAACAAATGGCCCTCCCCAACTGTTATCCCATTACCTTTCACGTCCACCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGGATATCAGCACTCTTaGTGCAAGAAGATGTCATCT +
Preference number: 2 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLGYQHS*CKKMSS
Trigger: AGATGACATCTTCTTGCAGCAAGAGTGCTGATATCC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR TCA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCACCACTGGATATGTCTTaGAATAGCATCGGTGGACGT +
Preference number: 2 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAPLDMS*NSIGGR
Trigger: ACGTCCACCGATGCTATTTCAAGACATATCCAGTGG...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTAGATGTCATCTCAAGTaGAAGAGCATCATCCAGTTC +
Preference number: 2 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSRCHLK*KSIIQF
Trigger: GAACTGGATGATGCTCTTGCACTTGAGATGACATCT...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR TCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAAAGAGTAATCAGTCCTaGTCAATTCTGTATGGAGCA +
Preference number: 2 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEKSNQS*SILYGA
Trigger: TGCTCCATACAGAATTGATCAGGACTGATTACTCTT...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATATCAGCACTCTTGCTaGAAGAAGATGTCATCTCAA +
Preference number: 2 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSYQHSC*KKMSSQ
Trigger: TTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAACACACAAAGTTCAATaGATGAGTAACATGGCCTTT +
Preference number: 2 (lower is better)
Translates to: SKSFERGFSVTLALVWFLTHKVQ*MSNMAF
Trigger: AAAGGCCATGTTACTCATGCATTGAACTTTGTGTGT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAATTTCTCTGTCACGCTTaGATTAGTGTGGTTCTTAGA +
Preference number: 2 (lower is better)
Translates to: VLINSVWSISTRILQYMEFLCHA*ISVVLR
Trigger: TCTAAGAACCACACTAATGCAAGCGTGACAGAGAAA...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR GCA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCACATGGAACTAACCAATaGCAGAGTTGTAGTAAGTCA +
Preference number: 2 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAHGTNQ*QSCSKS
Trigger: TGACTTACTACAACTCTGGCATTGGTTAGTTCCATG...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTCACTGTTATTCCACTaGATATGTCTTGAAATAGCA +
Preference number: 2 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLSLLFH*ICLEIA
Trigger: TGCTATTTCAAGACATATCCAGTGGAATAACAGTGA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR CCA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCAAAAACTCACAAATTCTaGTTCCCTAAACAACCATTC +
Preference number: 2 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAKTHKF*FPKQPF
Trigger: GAATGGTTGTTTAGGGAACCAGAATTTGTGAGTTTT...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR CCA 72 bp TTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTaGTTCTTAGAAGATCTGCAGGGAGGCCAGAGTCTC +
Preference number: 3 (lower is better)
Translates to: FERGFSVTLALV*FLEDLQGGQSL
Trigger: GAGACTCTGGCCTCCCTGCAGATCTTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR CAA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCAGAGGTTCTCTTTCCTaGATTTCAGGCAACCTTACT +
Preference number: 3 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFRGSLS*ISGNLT
Trigger: AGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTCT...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
3UTR GCA 72 bp AACCATGAATCTCTCCTCTTGGGATATCAGCACTCTTaGTGCAAGAAGATGTCATCTCAAGTGCAAGAGCAT +
Preference number: 3 (lower is better)
Translates to: NHESLLLGYQHS*CKKMSSQVQEH
Trigger: ATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATATCCCAAGAGGAGAGATTCATGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR CAA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGTTGGGGAGGGCCATTaGTTCAATCTTCCTTTGAAA +
Preference number: 3 (lower is better)
Translates to: SKSFERGFSVTLALVWFLVGEGH*FNLPLK
Trigger: TTTCAAAGGAAGATTGAACAAATGGCCCTCCCCAAC...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAGTTGGGGAGGGCCATTaGTTCAATCTTCCTTTGAAA +
Preference number: 3 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEVGEGH*FNLPLK
Trigger: TTTCAAAGGAAGATTGAACAAATGGCCCTCCCCAAC...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR TCA 72 bp TCAATAGCAATTGGTCCACAGAAGAGTAATCAGTCCTaGTCAATTCTGTATGGAGCATTAGCACCAGAATCT +
Preference number: 3 (lower is better)
Translates to: SIAIGPQKSNQS*SILYGALAPES
Trigger: AGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGACTGATTACTCTTCTGTGGACCAATTGCTATTGA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR TCA 72 bp CCCCTTATTTGCCTCCTCTTGAATGTCCTACTCTTTTaGGGCTTAAATATCCAAGGTCAGAATTTCAGTATT +
Preference number: 3 (lower is better)
Translates to: PLICLLLNVLLF*GLNIQGQNFSI
Trigger: AATACTGAAATTCTGACCTTGGATATTTAAGCCTCAAAAGAGTAGGACATTCAAGAGGAGGCAAATAAGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR-3UTR CAA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCATTTTGGATCCATGCATaGGAAAAGATGTGTGGAATG +
Preference number: 3 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAFWIHA*EKMCGM
Trigger: CATTCCACACATCTTTTCCAATGCATGGATCCAAAA...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR GCA 72 bp GCTGCTTATATCACCAGCTATACAAGAAAATTAGCTTaGCATCCCTACATCCAAAGTTTTCCAGAAGAATTA +
Preference number: 3 (lower is better)
Translates to: AAYITSYTRKLA*HPYIQSFPEEL
Trigger: TAATTCTTCTGGAAAACTTTGGATGTAGGGATGGCAAGCTAATTTTCTTGTATAGCTGGTGATATAAGCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR CCA 72 bp ATTCATGTAACAAGAACCATATCACTGTTATTCCACTaGATATGTCTTGAAATAGCATCGGTGGACGTGAAA +
Preference number: 3 (lower is better)
Translates to: IHVTRTISLLFH*ICLEIASVDVK
Trigger: TTTCACGTCCACCGATGCTATTTCAAGACATATCCAGTGGAATAACAGTGATATGGTTCTTGTTACATGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR TCA 72 bp GCAAGGCAATTGATCCTAGAACCTCAACCATTGAGCTaGTATTCTCACACTGATCTTTACATAAAAATAGTA +
Preference number: 3 (lower is better)
Translates to: ARQLILEPQPLS*YSHTDLYIKIV
Trigger: TACTATTTTTATGTAAAGATCAGTGTGAGAATATCAGCTCAATGGTTGAGGTTCTAGGATCAATTGCCTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp CATGGTGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCAGGCAGGGAGGCAGGTaGGCCTCGGTCCGCCGCAAG +
Preference number: 4 (lower is better)
Translates to: HGVGAQHRRVFCRGQYVSRQGGR*ASVRRK
Trigger: CTTGCGGCGGACCGAGGCCCACCTGCCTCCCTGCCT...GCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACACCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGCGCTCCAACTACCCCTaGGCGAAGGCGTTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQRSNYP*AKALAA
Trigger: CGCGGCCAACGCCTTCGCCCAGGGGTAGTTGGAGCG...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCAAGGCGCCCAGTACCTaGAGCCTGGGAACCTGCACC +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFKAPST*SLGTCT
Trigger: GGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTT...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGGCTCGGCCCAGGTTCTaGTCCCTGACACGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQARPRF*SLTRRG
Trigger: GCCTCTGCGTGTCAGGGAGCAGAACCTGGGCCGAGC...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACGCTCCAACTACCCCTaGGCGAAGGCGTTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRRSNYP*AKALAA
Trigger: CGCGGCCAACGCCTTCGCCCAGGGGTAGTTGGAGCG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCGACGGCCTGAGTGTTTaGGGCCACAAGGAGACAGGA +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFDGLSV*GHKETG
Trigger: TCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTC...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGGGACCACGGGCCGCATaGTGTCGTCGTCAAGGCAAC +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQGPRAA*CRRQGN
Trigger: GTTGCCTTGACGACGACAGCATGCGGCCCGTGGTCC...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTCCTGGGCGAAGGCGTTaGCCGCGGAGCTGCAAGGGG +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSPGRRR*PRSCKG
Trigger: CCCCTTGCAGCTCCGCGGCCAACGCCTTCGCCCAGG...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR TCA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCGAGCAATTAGCTGGGTaGGAGGCACCACCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFEQLAG*EAPPPS
Trigger: GCTGGGAGGTGGTGCCTCTCACCCAGCTAATTGCTC...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR GCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCAACCTCCCCAGGAGCTaGCAATGTTCGCGCAAATCC +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFNLPRS*QCSRKS
Trigger: GGATTTGCGCGAACATTGGCAGCTCCTGGGGAGGTT...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGCCAGTACCTGGAGCCTaGGAACCTGCACCGCTCCAA +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQPVPGA*EPAPLQ
Trigger: TTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGG...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAAGGCAGGGAGGCAGGTaGGCCTCGGTCCGCCGCAAG +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALERQGGR*ASVRRK
Trigger: CTTGCGGCGGACCGAGGCCCACCTGCCTCCCTGCCT...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGAGCAATTAGCTGGGTaGGAGGCACCACCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLEQLAG*EAPPPS
Trigger: GCTGGGAGGTGGTGCCTCTCACCCAGCTAATTGCTC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTACCAGGTTCTGCTCCCTaGCACGCAGAGGCCCTGCGT +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLPGSAP*HAEALR
Trigger: ACGCAGGGCCTCTGCGTGTCAGGGAGCAGAACCTGG...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR GCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATGGAGCCTGGGAACCTaGACCGCTCCAACTACCCCT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRWSLGT*TAPTTP
Trigger: AGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCA...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCCGGCCCAGGTCAGAATaGGTTCACGGCAGGCACCAA +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSRPRSE*VHGRHQ
Trigger: TTGGTGCCTGCCGTGAACGCATTCTGACCTGGGCCG...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCACGGCCCAGGTCAGAATaGGTTCACGGCAGGCACCAA +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPRPRSE*VHGRHQ
Trigger: TTGGTGCCTGCCGTGAACGCATTCTGACCTGGGCCG...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGACACGCAGAGGCCCTaGGTCCCCACACGCCTTGGT +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLDTQRP*VPTRLG
Trigger: ACCAAGGCGTGTGGGGACGCAGGGCCTCTGCGTGTC...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR CCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCCAGTACCTGGAGCCTaGGAACCTGCACCGCTCCAA +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLPVPGA*EPAPLQ
Trigger: TTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGG...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAGGCAGGGAGGCAGGTaGGCCTCGGTCCGCCGCAAG +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLRQGGR*ASVRRK
Trigger: CTTGCGGCGGACCGAGGCCCACCTGCCTCCCTGCCT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGGCACCAACACCTGTaGAGGCCAAGGGCTAGAGAG +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSRHQHL*RPRARE
Trigger: CTCTCTAGCCCTTGGCCTTCACAGGTGTTGGTGCCT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCCAAAATCGCATAGCTTaGCAACGCCAGACTGGGAGA +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFQNRIA*QRQTGR
Trigger: TCTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTG...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCTGCTGGTGTTCCATTTaGGGCAAATCAGCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFCWCSI*GKSAPE
Trigger: TTCAGGGGCTGATTTGCCTCAAATGGAACACCAGCA...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCGACGGCCTGAGTGTTTaGGGCCACAAGGAGACAGGA +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSDGLSV*GHKETG
Trigger: TCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTC...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGGACCACGGGCCGCATaGTGTCGTCGTCAAGGCAAC +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSGPRAA*CRRQGN
Trigger: GTTGCCTTGACGACGACAGCATGCGGCCCGTGGTCC...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp TCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCTTTGCTAAAGGACCACGGGCCGCATaGTGTCGTCGTCAAGGCAAC +
Preference number: 4 (lower is better)
Translates to: SAQKGLLSGSICKHFFAKGPRAA*CRRQGN
Trigger: GTTGCCTTGACGACGACAGCATGCGGCCCGTGGTCC...TTTAGCAAAGAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR GCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCTGTTGTGATTTCTTCTaGGGACGCAGTCACGAGTCC +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFCCDFF*GRSHES
Trigger: GGACTCGTGACTGCGTCCGCAGAAGAAATCACAACA...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CATGGTGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATAGGCACAAAGTCTTaGGAGACAGATACGGCCCAG +
Preference number: 4 (lower is better)
Translates to: HGVGAQHRRVFCRGQYVSIGTKS*ETDTAQ
Trigger: CTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTAT...GCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACACCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR TCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCGGAGGTCCTGATACCTaGTGTAATGTAATACTGGGG +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFGGPDT*CNVILG
Trigger: CCCCAGTATTACATTACATCAGGTATCAGGACCTCC...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR TCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGCTTTTGAGACGGCCTaGGTGTTTGAGGCCACAAGG +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLAFETA*VFEATR
Trigger: CCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATGCAGCAAGCCCACTaGTCCCCACCAGTACATACA +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQMQQAH*SPPVHT
Trigger: TGTATGTACTGGTGGGGAGCAGTGGGCTTGCTGCAT...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR TCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAGAGCAATTAGCTGGGTaGGAGGCACCACCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSEQLAG*EAPPPS
Trigger: GCTGGGAGGTGGTGCCTCTCACCCAGCTAATTGCTC...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAATGGAGCCTGGGAACCTaGACCGCTCCAACTACCCCT +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEWSLGT*TAPTTP
Trigger: AGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCA...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCTGTTGTGATTTCTTCTaGGGACGCAGTCACGAGTCC +
Preference number: 4 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFCCDFF*GRSHES
Trigger: GGACTCGTGACTGCGTCCGCAGAAGAAATCACAACA...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGCTTGGATTCCTTGTGTaGTCCACGCTGACATTGCTG +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQLGFLV*STLTLL
Trigger: CAGCAATGTCAGCGTGGACCACACAAGGAATCCAAG...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAGGGAATTGCCACGCTTaGATTCCTTGTGTGGTCCAC +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRGNCHA*IPCVVH
Trigger: GTGGACCACACAAGGAATCCAAGCGTGGCAATTCCC...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAGTCACGAGCCATGATTaGCTCAGGGCCAACCACCCC +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEVTSHD*LRANHP
Trigger: GGGGTGGTTGGCCCTGAGCCAATCATGGCTCGTGAC...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTACTCCCTTCTTCTGATTaGCCGAGCCGAGTCGTCACG +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLLPSSD*PSRVVT
Trigger: CGTGACGACTCGGCTCGGCCAATCAGAAGAAGGGAG...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR TCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAAGGCACCAACACCTGTaGAGGCCAAGGGCTAGAGAG +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMERHQHL*RPRARE
Trigger: CTCTCTAGCCCTTGGCCTTCACAGGTGTTGGTGCCT...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACAAAATCGCATAGCTTaGCAACGCCAGACTGGGAGA +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRQNRIA*QRQTGR
Trigger: TCTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAGGCCTCCCTTCTTCTaGTTGGCCGAGCCGAGTCGT +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLRPPFF*LAEPSR
Trigger: ACGACTCGGCTCGGCCAATCAGAAGAAGGGAGGCCT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR GCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCTGTTGTGATTTCTTCTaGGGACGCAGTCACGAGTCC +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSCCDFF*GRSHES
Trigger: GGACTCGTGACTGCGTCCGCAGAAGAAATCACAACA...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCAGATGTCATCTCAAGTaGAAGAGCATCATCCAGTTC +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFRCHLK*KSIIQF
Trigger: GAACTGGATGATGCTCTTGCACTTGAGATGACATCT...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCGGATATCAGCACTCTTaGTGCAAGAAGATGTCATCT +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFGYQHS*CKKMSS
Trigger: AGATGACATCTTCTTGCAGCAAGAGTGCTGATATCC...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAATAGGCACAAAGTCTTaGGAGACAGATACGGCCCAG +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPIGTKS*ETDTAQ
Trigger: CTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTAT...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCTTTTGGGATCAGCATTaGTATCCTGTACCACAAGTG +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFFWDQH*YPVPQV
Trigger: CACTTGTGGTACAGGATACCAATGCTGATCCCAAAA...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAATTCCAGCGCTGTTGTaGTTTCTTCTGCGGACGCAG +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEIPALL*FLLRTQ
Trigger: CTGCGTCCGCAGAAGAAATCACAACAGCGCTGGAAT...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCTTTGCTAAAATTCCAGCGCTGTTGTaGTTTCTTCTGCGGACGCAG +
Preference number: 4 (lower is better)
Translates to: SAQKGLLSGSICKHFFAKIPALL*FLLRTQ
Trigger: CTGCGTCCGCAGAAGAAATCACAACAGCGCTGGAAT...TTTAGCAAAGAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR TCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACATTGCTGCAGTCTTTaGGGCTTGTTGAAGGCACTA +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRHCCSL*GLLKAL
Trigger: TAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCACCACTGGATATGTCTTaGAATAGCATCGGTGGACGT +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPPLDMS*NSIGGR
Trigger: ACGTCCACCGATGCTATTTCAAGACATATCCAGTGG...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAGCTTTTGAGACGGCCTaGGTGTTTGAGGCCACAAGG +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEAFETA*VFEATR
Trigger: CCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGC...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGATTTTGCACCTTGGTaGAAAGCTTTTGAGACGGCC +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPDFAPW*KAFETA
Trigger: GGCCGTCTCAAAAGCTTTTCACCAAGGTGCAAAATC...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAGTCGTCACGAGCCATaGTTGGCTCAGGGCCAACCA +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLSRHEP*LAQGQP
Trigger: TGGTTGGCCCTGAGCCAATCATGGCTCGTGACGACT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS-3UTR GCA 90 bp TCTTTCCTTGATTTCAGGCAACCTTACTCCAGCAAACACAGGATTTTTATTAAACGGCCCAGGTCAGAATaGGTTCACGGCAGGCACCAA +
Preference number: 4 (lower is better)
Translates to: SFLDFRQPYSSKHRIFIKRPRSE*VHGRHQ
Trigger: TTGGTGCCTGCCGTGAACGCATTCTGACCTGGGCCG...TTTAATAAAAATCCTGTGTTTGCTGGAGTAAGGTTGCCTGAAATCAAGGAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR GCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATGTAAGTGGGGGAATTaGCACGCTTGGATTCCTTGT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRCKWGN*HAWIPC
Trigger: ACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACA...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCATTACCAGACAACCAATaGCCCACACATCAACAGCCT +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPLPDNQ*PTHQQP
Trigger: AGGCTGTTGATGTGTGGGCCATTGGTTGTCTGGTAA...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAAGATTGTGTGTAAGTaGGGGAATTGCCACGCTTGG +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPKIVCK*GNCHAW
Trigger: CCAAGCGTGGCAATTCCCCCACTTACACACAATCTT...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAATTCCAGCGCTGTTGTaGTTTCTTCTGCGGACGCAG +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSIPALL*FLLRTQ
Trigger: CTGCGTCCGCAGAAGAAATCACAACAGCGCTGGAAT...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACAGCCTTGCCATACTTaGCATCACCAACCAATAGTT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRQPCHT*HHQPIV
Trigger: AACTATTGGTTGGTGATGTCAAGTATGGCAAGGCTG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp CACCACTTCAGAGAGCTTAGGATAGCGTCTTTCAAGAGGTTCTCTTTCCTTGATGAGGTTCTCTTTCCTTaGTTTCAGGCAACCTTACTC +
Preference number: 4 (lower is better)
Translates to: HHFRELRIASFKRFSFLDEVLFP*FQATLL
Trigger: GAGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTC...ATCAAGGAAAGAGAACCTCTTGAAAGACGCTATCCTAAGCTCTCTGAAGTGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR TCA 90 bp GAAAAGCTTTTGAGACGGCCTGAGTGTTTGAGGCCACAAGGAGACAGGAACTTCTTCCCTATTAGTGTGTaGCTAAATCATATCCTTGCA +
Preference number: 4 (lower is better)
Translates to: EKLLRRPECLRPQGDRNFFPISV*LNHILA
Trigger: TGCAAGGATATGATTTAGTCACACACTAATAGGGAA...GAAGTTCCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCTCAAAAGCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAACCTCCCCAGGAGCTaGCAATGTTCGCGCAAATCC +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLNLPRS*QCSRKS
Trigger: GGATTTGCGCGAACATTGGCAGCTCCTGGGGAGGTT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAATGCTGGGAGCAACTaGAGAAAGATTGTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQNAGSN*RKIVCK
Trigger: CTTACACACAATCTTTCTGCAGTTGCTCCCAGCATT...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAGTAATACTGGGGGTGTaGAGGTCAATAGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEVILGV*RSIAAR
Trigger: TCTGGCTGCTATTGACCTGCACACCCCCAGTATTAC...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAGGAGCAGTGCTCTGTTaGTTCTCTAATCCCCTGACC +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSGAVLC*FSNPLT
Trigger: GGTCAGGGGATTAGAGAAGCAACAGAGCACTGCTCC...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAATAGGCACAAAGTCTTaGGAGACAGATACGGCCCAG +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLIGTKS*ETDTAQ
Trigger: CTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTAT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACTTGTCCTACTGTCATaGAGACAGCTGGCATTTGAA +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRLVLLS*RQLAFE
Trigger: TTCAAATGCCAGCTGTCTCCATGACAGTAGGACAAG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAGGCACTATTTTGTTGTaGCTTGTCCTACTGTCATGG +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRGTILL*LVLLSW
Trigger: CCATGACAGTAGGACAAGCCACAACAAAATAGTGCC...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAACTTGGATTCCTTGTGTaGTCCACGCTGACATTGCTG +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLELGFLV*STLTLL
Trigger: CAGCAATGTCAGCGTGGACCACACAAGGAATCCAAG...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAGGGAATTGCCACGCTTaGATTCCTTGTGTGGTCCAC +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSGNCHA*IPCVVH
Trigger: GTGGACCACACAAGGAATCCAAGCGTGGCAATTCCC...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAATAGGGGTTCCCCCATaGACATTTCAGTTACCAGAC +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLIGVPP*TFQLPD
Trigger: GTCTGGTAACTGAAATGTTCATGGGGGAACCCCTAT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTCTTTGAGGCTTGTTaGAGGCACTATTTTGTTGTG +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPVFEAC*RHYFVV
Trigger: CACAACAAAATAGTGCCTTCAACAAGCCTCAAAGAC...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTACATTGCTGCAGTCTTTaGGGCTTGTTGAAGGCACTA +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLHCCSL*GLLKAL
Trigger: TAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATG...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAATGTTATAAATGCCTaGTGGGGAATGTCTGTTCGG +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSNVINA*WGMSVR
Trigger: CCGAACAGACATTCCCCATCAGGCATTTATAACATT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAATGTTATAAATGCCTaGTGGGGAATGTCTGTTCGG +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPNVINA*WGMSVR
Trigger: CCGAACAGACATTCCCCATCAGGCATTTATAACATT...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCAAATTTGAGGTGAAATaGATATGGTTCGCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFKFEVK*IWFAGP
Trigger: TGGACCTGCGAACCATATGCATTTCACCTCAAATTT...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR GCA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGTCTGTACCATCGGGTTaGCACATAATCAGTATAAAC +
Preference number: 4 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQSVPSG*HIISIN
Trigger: GTTTATACTGATTATGTGGCAACCCGATGGTACAGA...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGAGGTGAAATGCATATaGTTCGCAGGTCCAAAAGAT +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLEVKCI*FAGPKD
Trigger: ATCTTTTGGACCTGCGAACCATATGCATTTCACCTC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAACGCTTGCATTAGTGTaGTTCTTAGAAGATCTGCAG +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRTLALV*FLEDLQ
Trigger: CTGCAGATCTTCTAAGAACCACACTAATGCAAGCGT...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR CAA 72 bp CCACCACCTATAGACTTGTACATTGAAACCCCTTATTaGCCTCCTCTTGAATGTCCTACTCTTTTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: PPPIDLYIETPY*PPLECPTLLRL
Trigger: AAGCCTCAAAAGAGTAGGACATTCAAGAGGAGGCAAATAAGGGGTTTCAATGTACAAGTCTATAGGTGGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307465.9
3UTR CAA 72 bp AAGCCGAAGCGCCATTTGGCTTTAAGTATTACCTGTTaGCCATGCTGCAGAATCTATTGGCAGTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: KPKRHLALSITC*PCCRIYWQCFS
Trigger: TGAAAAACACTGCCAATAGATTCTGCAGCATGGCAAACAGGTAATACTTAAAGCCAAATGGCGCTTCGGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR TCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAACAGCCTTGCCATACTTaGCATCACCAACCAATAGTT +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEQPCHT*HHQPIV
Trigger: AACTATTGGTTGGTGATGTCAAGTATGGCAAGGCTG...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAATAGGGGTTCCCCCATaGACATTTCAGTTACCAGAC +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEIGVPP*TFQLPD
Trigger: GTCTGGTAACTGAAATGTTCATGGGGGAACCCCTAT...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAGGTTCTCTTTCCTTaGTTTCAGGCAACCTTACTC +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLEVLFP*FQATLL
Trigger: GAGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTC...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGAGGTTCTCTTTCCTTaGTTTCAGGCAACCTTACTC +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSEVLFP*FQATLL
Trigger: GAGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTC...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTGCTGGTGTTCCATTTaGGGCAAATCAGCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLCWCSI*GKSAPE
Trigger: TTCAGGGGCTGATTTGCCTCAAATGGAACACCAGCA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCACCACTGGATATGTCTTaGAATAGCATCGGTGGACGT +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSPLDMS*NSIGGR
Trigger: ACGTCCACCGATGCTATTTCAAGACATATCCAGTGG...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAGAGTAATCAGTCCTaGTCAATTCTGTATGGAGCA +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSKSNQS*SILYGA
Trigger: TGCTCCATACAGAATTGATCAGGACTGATTACTCTT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGAAGAGTAATCAGTCCTaGTCAATTCTGTATGGAGCA +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLKSNQS*SILYGA
Trigger: TGCTCCATACAGAATTGATCAGGACTGATTACTCTT...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAGATTTTGCACCTTGGTaGAAAGCTTTTGAGACGGCC +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEDFAPW*KAFETA
Trigger: GGCCGTCTCAAAAGCTTTTCACCAAGGTGCAAAATC...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCATGGAATGCAGGTAAATaGTTTTGCACCTTGGTGAAA +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPWNAGK*FCTLVK
Trigger: TTTCACCAAGGTGCAAAATCATTTACCTGCATTCCA...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATCCGTAGAAACTTTTTaGGTTTCTTCAATCCGTTCG +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRSVETF*VSSIRS
Trigger: CGAACGGATTGAAGAAACGCAAAAAGTTTCTACGGA...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCTCCGTAGAAACTTTTTaGGTTTCTTCAATCCGTTCG +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSSVETF*VSSIRS
Trigger: CGAACGGATTGAAGAAACGCAAAAAGTTTCTACGGA...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCTCTGTACCATCGGGTTaGCACATAATCAGTATAAAC +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSSVPSG*HIISIN
Trigger: GTTTATACTGATTATGTGGCAACCCGATGGTACAGA...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTTGGAATTTCGAGCTATaGCTCCCAGTGCTCTTAGTT +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSWNFEL*LPVLLV
Trigger: AACTAAGAGCACTGGGAGGCATAGCTCGAAATTCCA...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCATATCAGCACTCTTGCTaGAAGAAGATGTCATCTCAA +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPYQHSC*KKMSSQ
Trigger: TTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGTTGAAACCCCTTATTTaGCTCCTCTTGAATGTCCTA +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLLKPLI*LLLNVL
Trigger: TAGGACATTCAAGAGGAGGCAAATAAGGGGTTTCAA...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAACCTGTTTGCCATGCTaGAGAATCTATTGGCAGTGT +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLTCLPC*RIYWQC
Trigger: ACACTGCCAATAGATTCTGCAGCATGGCAAACAGGT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATTGACAACGCCAGACTaGGAGACTAATATATTCTCT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRLTTPD*ETNIFS
Trigger: AGAGAATATATTAGTCTCCCAGTCTGGCGTTGTCAA...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTACCAGACAACCAATaGCCCACACATCAACAGCCT +
Preference number: 4 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSLPDNQ*PTHQQP
Trigger: AGGCTGTTGATGTGTGGGCCATTGGTTGTCTGGTAA...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACTGATCAATTCTGTATaGAGCATTAGCACCAGAATC +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRLINSV*SISTRI
Trigger: GATTCTGGTGCTAATGCTCCATACAGAATTGATCAG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
3UTR CAA 72 bp AAATCATGGTGTAGGAGCTCAGCACAGAAGGGTCTTTaGTCGGGGTCAATATGTAAGCATTTCTTTGCTAAA +
Preference number: 4 (lower is better)
Translates to: KSWCRSSAQKGL*SGSICKHFFAK
Trigger: TTTAGCAAAGAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACACCATGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR TCA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTGCTTTAGTAACTTaGTTTCTCGCATTGCAATCT +
Preference number: 4 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPVALVT*FLALQS
Trigger: AGATTGCAATGCGAGAAATCAAGTTACTAAAGCAAC...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGTTGCTTTAGTAACTTaGTTTCTCGCATTGCAATCT +
Preference number: 4 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLVALVT*FLALQS
Trigger: AGATTGCAATGCGAGAAATCAAGTTACTAAAGCAAC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAAATGTCCTACTCTTTTaGGGCTTAAATATCCAAGGT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRNVLLF*GLNIQG
Trigger: ACCTTGGATATTTAAGCCTCAAAAGAGTAGGACATT...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTACCTCAACCATTGAGCTaGTATTCTCACACTGATCTT +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLPQPLS*YSHTDL
Trigger: AAGATCAGTGTGAGAATATCAGCTCAATGGTTGAGG...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCATGTAAGTGGGGGAATTaGCACGCTTGGATTCCTTGT +
Preference number: 4 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVACKWGN*HAWIPC
Trigger: ACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACA...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAACACACAAAGTTCAATaGATGAGTAACATGGCCTTT +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRTHKVQ*MSNMAF
Trigger: AAAGGCCATGTTACTCATGCATTGAACTTTGTGTGT...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGAGGTGAAATGCATATaGTTCGCAGGTCCAAAAGAT +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSEVKCI*FAGPKD
Trigger: ATCTTTTGGACCTGCGAACCATATGCATTTCACCTC...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCCTAAGAACTTCTTTATaGCCACAATTCTTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFLRTSL*PQFFQY
Trigger: ATACTGGAAGAATTGTGGCCATAAAGAAGTTCTTAG...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACTTGTCCTACTGTCATaGAGACAGCTGGCATTTGAA +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALELVLLS*RQLAFE
Trigger: TTCAAATGCCAGCTGTCTCCATGACAGTAGGACAAG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAGGCACTATTTTGTTGTaGCTTGTCCTACTGTCATGG +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEGTILL*LVLLSW
Trigger: CCATGACAGTAGGACAAGCCACAACAAAATAGTGCC...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAAGATTGTGTGTAAGTaGGGGAATTGCCACGCTTGG +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLKIVCK*GNCHAW
Trigger: CCAAGCGTGGCAATTCCCCCACTTACACACAATCTT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTTCTGTAACCCTGAATTaGTATAGTCTCAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSSVTLN*YSLSPH
Trigger: ATGGGGACTGAGACTATACCAATTCAGGGTTACAGA...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTCTTTCTTTGTTAGCCTaGAATTTCGAGCTATGCCTC +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSLSLLA*NFELCL
Trigger: GAGGCATAGCTCGAAATTCCAGGCTAACAAAGAAAG...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAACGCTTGCATTAGTGTaGTTCTTAGAAGATCTGCAG +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLTLALV*FLEDLQ
Trigger: CTGCAGATCTTCTAAGAACCACACTAATGCAAGCGT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAGTCTTTGAGGCTTGTTaGAGGCACTATTTTGTTGTG +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEVFEAC*RHYFVV
Trigger: CACAACAAAATAGTGCCTTCAACAAGCCTCAAAGAC...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTATGGAATGCAGGTAAATaGTTTTGCACCTTGGTGAAA +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLWNAGK*FCTLVK
Trigger: TTTCACCAAGGTGCAAAATCATTTACCTGCATTCCA...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTATATAGACTTGTACATTaGAACCCCTTATTTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLYRLVH*NPLFAS
Trigger: GGAGGCAAATAAGGGGTTTCAATGTACAAGTCTATA...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAAAATTTGAGGTGAAATaGATATGGTTCGCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLKFEVK*IWFAGP
Trigger: TGGACCTGCGAACCATATGCATTTCACCTCAAATTT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTAAATTTGAGGTGAAATaGATATGGTTCGCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSKFEVK*IWFAGP
Trigger: TGGACCTGCGAACCATATGCATTTCACCTCAAATTT...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CGGGGTCAATATGTAAGCATTTCTTTGCTAAATCTATCACCACTTCAGAGAGCTTCCGTAGAAACTTTTTaGGTTTCTTCAATCCGTTCG +
Preference number: 4 (lower is better)
Translates to: RGQYVSISLLNLSPLQRASVETF*VSSIRS
Trigger: CGAACGGATTGAAGAAACGCAAAAAGTTTCTACGGA...AGCTCTCTGAAGTGGTGATAGATTTAGCAAAGAAATGCTTACATATTGACCCCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR GCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAGGATATCAGCACTCTTaGTGCAAGAAGATGTCATCT +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEGYQHS*CKKMSS
Trigger: AGATGACATCTTCTTGCAGCAAGAGTGCTGATATCC...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAATTTCTCTGTCACGCTTaGATTAGTGTGGTTCTTAGA +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEFLCHA*ISVVLR
Trigger: TCTAAGAACCACACTAATGCAAGCGTGACAGAGAAA...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAACATGGAACTAACCAATaGCAGAGTTGTAGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEHGTNQ*QSCSKS
Trigger: TGACTTACTACAACTCTGGCATTGGTTAGTTCCATG...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTCATGGAACTAACCAATaGCAGAGTTGTAGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSHGTNQ*QSCSKS
Trigger: TGACTTACTACAACTCTGGCATTGGTTAGTTCCATG...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAAACGGACATCTGTCCTaGAGTATTCTCTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLNGHLS*SILFFS
Trigger: AGAAAAGAAGAGAATACTCCAGGACAGATGTCCGTT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGATCACTGTTATTCCACTaGATATGTCTTGAAATAGCA +
Preference number: 4 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRSLLFH*ICLEIA
Trigger: TGCTATTTCAAGACATATCCAGTGGAATAACAGTGA...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCTCACTGTTATTCCACTaGATATGTCTTGAAATAGCA +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSSLLFH*ICLEIA
Trigger: TGCTATTTCAAGACATATCCAGTGGAATAACAGTGA...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAACTGATCAATTCTGTATaGAGCATTAGCACCAGAATC +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLELINSV*SISTRI
Trigger: GATTCTGGTGCTAATGCTCCATACAGAATTGATCAG...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAAGACAGGAACTTCTCTaGATTCTAGTATCACCCTTA +
Preference number: 4 (lower is better)
Translates to: SKSFERGFSVTLALVWFLRQELL*ILVSPL
Trigger: TAAGGGTGATACTAGAATCCAGAGAAGTTCCTGTCT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAAGACAGGAACTTCTCTaGATTCTAGTATCACCCTTA +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLERQELL*ILVSPL
Trigger: TAAGGGTGATACTAGAATCCAGAGAAGTTCCTGTCT...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAAACTCACAAATTCTaGTTCCCTAAACAACCATTC +
Preference number: 4 (lower is better)
Translates to: ISALLLQEDVISSARASSKTHKF*FPKQPF
Trigger: GAATGGTTGTTTAGGGAACCAGAATTTGTGAGTTTT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR TCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAATTATTTGCCTCCTCTTaGATGTCCTACTCTTTTGAG +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALELFASS*MSYSFE
Trigger: CTCAAAAGAGTAGGACATTCAAGAGGAGGCAAATAA...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAATGCTGGGAGCAACTaGAGAAAGATTGTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLNAGSN*RKIVCK
Trigger: CTTACACACAATCTTTCTGCAGTTGCTCCCAGCATT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAATATCAGCACTCTTGCTaGAAGAAGATGTCATCTCAA +
Preference number: 4 (lower is better)
Translates to: VLINSVWSISTRILQYMEYQHSC*KKMSSQ
Trigger: TTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCAATTACCTGTTTGCCATaGTGCAGAATCTATTGGCAG +
Preference number: 4 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAITCLP*CRIYWQ
Trigger: CTGCCAATAGATTCTGCAGCATGGCAAACAGGTAAT...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR GCA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTACAAGAAAATTAGCTTaGCATCCCTACATCCAAAGT +
Preference number: 4 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSTRKLA*HPYIQS
Trigger: ACTTTGGATGTAGGGATGGCAAGCTAATTTTCTTGT...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTTTTGGGATCAGCATTaGTATCCTGTACCACAAGTG +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLFWDQH*YPVPQV
Trigger: CACTTGTGGTACAGGATACCAATGCTGATCCCAAAA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTCTGTAACCCTGAATTaGTATAGTCTCAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLSVTLN*YSLSPH
Trigger: ATGGGGACTGAGACTATACCAATTCAGGGTTACAGA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR GCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAACACACAAAGTTCAATaGATGAGTAACATGGCCTTT +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALETHKVQ*MSNMAF
Trigger: AAAGGCCATGTTACTCATGCATTGAACTTTGTGTGT...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TCTTTCCTTGATTTCAGGCAACCTTACTCCAGCAAACACAGGATTTTTATTAAAGAGGTGAAATGCATATaGTTCGCAGGTCCAAAAGAT +
Preference number: 4 (lower is better)
Translates to: SFLDFRQPYSSKHRIFIKEVKCI*FAGPKD
Trigger: ATCTTTTGGACCTGCGAACCATATGCATTTCACCTC...TTTAATAAAAATCCTGTGTTTGCTGGAGTAAGGTTGCCTGAAATCAAGGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTTGACAACGCCAGACTaGGAGACTAATATATTCTCT +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLLTTPD*ETNIFS
Trigger: AGAGAATATATTAGTCTCCCAGTCTGGCGTTGTCAA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAAAAACTCACAAATTCTaGTTCCCTAAACAACCATTC +
Preference number: 4 (lower is better)
Translates to: KSFERGFSVTLALVWFLEKTHKF*FPKQPF
Trigger: GAATGGTTGTTTAGGGAACCAGAATTTGTGAGTTTT...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACTAAGAACTTCTTTATaGCCACAATTCTTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: SQLSLFLPPKKFWIHALELRTSL*PQFFQY
Trigger: ATACTGGAAGAATTGTGGCCATAAAGAAGTTCTTAG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CCA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTCTAAGAACTTCTTTATaGCCACAATTCTTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLLRTSL*PQFFQY
Trigger: ATACTGGAAGAATTGTGGCCATAAAGAAGTTCTTAG...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 90 bp GCGGACGCAGTCACGAGTCCAGGGCGAAGCAGGCAGGGAGGCAGGTaGGCCTCGGTCCGCCGCAAGCTCACACTTAGGAGGACCACGGGC +
Preference number: 5 (lower is better)
Translates to: ADAVTSPGRSRQGGR*ASVRRKLTLRRTTG
Trigger: GCCCGTGGTCCTCCTAAGTGTGAGCTTGCGGCGGACCGAGGCCCACCTGCCTCCCTGCCTGCTTCGCCCTGGACTCGTGACTGCGTCCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS GCA 90 bp CACCTCCCAGCTCGTAAGGCGCCCAGTACCTGGAGCCTGGGAACCTaGACCGCTCCAACTACCCCTGGGCGAAGGCGTTGGCCGCGGAGC +
Preference number: 5 (lower is better)
Translates to: HLPARKAPSTWSLGT*TAPTTPGRRRWPRS
Trigger: GCTCCGCGGCCAACGCCTTCGCCCAGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGCTGGGAGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 90 bp AGAGGCACCACCTCCCAGCTCGTAAGGCGCCCAGTACCTGGAGCCTaGGAACCTGCACCGCTCCAACTACCCCTGGGCGAAGGCGTTGGC +
Preference number: 5 (lower is better)
Translates to: RGTTSQLVRRPVPGA*EPAPLQLPLGEGVG
Trigger: GCCAACGCCTTCGCCCAGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGCTGGGAGGTGGTGCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 90 bp CTGGGTGAGAGGCACCACCTCCCAGCTCGTAAGGCGCCCAGTACCTaGAGCCTGGGAACCTGCACCGCTCCAACTACCCCTGGGCGAAGG +
Preference number: 5 (lower is better)
Translates to: LGERHHLPARKAPST*SLGTCTAPTTPGRR
Trigger: CCTTCGCCCAGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGCTGGGAGGTGGTGCCTCTCACCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS GCA 90 bp CCTCGGTCCGCCGCAAGCTCACACTTAGGAGGACCACGGGCCGCATaGTGTCGTCGTCAAGGCAACGACCTCACTCTGTCCCCAACCATA +
Preference number: 5 (lower is better)
Translates to: PRSAASSHLGGPRAA*CRRQGNDLTLSPTI
Trigger: TATGGTTGGGGACAGAGTGAGGTCGTTGCCTTGACGACGACAGCATGCGGCCCGTGGTCCTCCTAAGTGTGAGCTTGCGGCGGACCGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CCA 90 bp CAAGGCAACGACCTCACTCTGTCCCCAACCATAGGCACAAAGTCTTaGGAGACAGATACGGCCCAGGTCAGAATGCGTTCACGGCAGGCA +
Preference number: 5 (lower is better)
Translates to: QGNDLTLSPTIGTKS*ETDTAQVRMRSRQA
Trigger: TGCCTGCCGTGAACGCATTCTGACCTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATGGTTGGGGACAGAGTGAGGTCGTTGCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACCCTGGGCGAAGGCGTaGGCCGCGGAGCTGCAAGGG +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRPWAKA*AAELQG
Trigger: CCCTTGCAGCTCCGCGGCCAACGCCTTCGCCCAGGG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS TCA 90 bp GTCCAAAAGATGCTGCCTAGCAAACTAGCAATTCCAGCGCTGTTGTaGTTTCTTCTGCGGACGCAGTCACGAGTCCAGGGCGAAGCAGGC +
Preference number: 5 (lower is better)
Translates to: VQKMLPSKLAIPALL*FLLRTQSRVQGEAG
Trigger: GCCTGCTTCGCCCTGGACTCGTGACTGCGTCCGCAGAAGAAATCACAACAGCGCTGGAATTGCTAGTTTGCTAGGCAGCATCTTTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACCCTGGGCGAAGGCGTaGGCCGCGGAGCTGCAAGGG +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEPWAKA*AAELQG
Trigger: CCCTTGCAGCTCCGCGGCCAACGCCTTCGCCCAGGG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 90 bp AGATTGTGTGTAAGTGGGGGAATTGCCACGCTTGGATTCCTTGTGTaGTCCACGCTGACATTGCTGCAGTCTTTGAGGCTTGTTGAAGGC +
Preference number: 5 (lower is better)
Translates to: RLCVSGGIATLGFLV*STLTLLQSLRLVEG
Trigger: GCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACACACAATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CCA 90 bp TCCAGAATTAATGCTGGGAGCAACTGCAGAAAGATTGTGTGTAAGTaGGGGAATTGCCACGCTTGGATTCCTTGTGTGGTCCACGCTGAC +
Preference number: 5 (lower is better)
Translates to: SRINAGSNCRKIVCK*GNCHAWIPCVVHAD
Trigger: GTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACACACAATCTTTCTGCAGTTGCTCCCAGCATTAATTCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS-3UTR CAA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGGGGGAATTGCCACGCTaGGATTCCTTGTGTGGTCCA +
Preference number: 5 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQGELPR*DSLCGP
Trigger: TGGACCACACAAGGAATCCAAGCGTGGCAATTCCCC...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS TCA 90 bp CCTTGTGTGGTCCACGCTGACATTGCTGCAGTCTTTGAGGCTTGTTaGAGGCACTATTTTGTTGTGGCTTGTCCTACTGTCATGGAGACA +
Preference number: 5 (lower is better)
Translates to: PCVVHADIAAVFEAC*RHYFVVACPTVMET
Trigger: TGTCTCCATGACAGTAGGACAAGCCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS-3UTR CAA 90 bp TGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGCATTTCCATAGGCACAAAGTCTaGGGAGACAGATACGGCCCA +
Preference number: 5 (lower is better)
Translates to: CRSSAQKGLLSGSICKHFHRHKV*GDRYGP
Trigger: TGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATG...GAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACATAGGCACAAAGTCTaGGGAGACAGATACGGCCCA +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRHRHKV*GDRYGP
Trigger: TGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAAGACGGCCTGAGTGTTaGAGGCCACAAGGAGACAGG +
Preference number: 5 (lower is better)
Translates to: SKSFERGFSVTLALVWFLRRPEC*RPQGDR
Trigger: CCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCT...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAAGACGGCCTGAGTGTTaGAGGCCACAAGGAGACAGG +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLERRPEC*RPQGDR
Trigger: CCTGTCTCCTTGTGGCCTCAAACACTCAGGCCGTCT...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS GCA 90 bp TGGTATAGTCTCAGTCCCCATTCCAGAATTAATGCTGGGAGCAACTaGAGAAAGATTGTGTGTAAGTGGGGGAATTGCCACGCTTGGATT +
Preference number: 5 (lower is better)
Translates to: WYSLSPHSRINAGSN*RKIVCKWGNCHAWI
Trigger: AATCCAAGCGTGGCAATTCCCCCACTTACACACAATCTTTCTGCAGTTGCTCCCAGCATTAATTCTGGAATGGGGACTGAGACTATACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS-3UTR CAA 90 bp AATCATGGTGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAGCACAGAAGGGTCTTTaGTCGGGGTCAATATGTAAG +
Preference number: 5 (lower is better)
Translates to: NHGVGAQHRRVFCRGQYVAQKGL*SGSICK
Trigger: CTTACATATTGACCCCGACAAAAGACCCTTCTGTGC...TACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACACCATGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CAA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACATTGCTGCAGTCTTaGAGGCTTGTTGAAGGCACT +
Preference number: 5 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQTLLQS*RLVEGT
Trigger: AGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGT...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGCACAGAAGGGTCTTTaGTCGGGGTCAATATGTAAG +
Preference number: 5 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLAQKGL*SGSICK
Trigger: CTTACATATTGACCCCGACAAAAGACCCTTCTGTGC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGACATTGCTGCAGTCTTaGAGGCTTGTTGAAGGCACT +
Preference number: 5 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLTLLQS*RLVEGT
Trigger: AGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGT...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTATGGTCCACGCTGACATaGCTGCAGTCTTTGAGGCTT +
Preference number: 5 (lower is better)
Translates to: SKSFERGFSVTLALVWFLWSTLT*LQSLRL
Trigger: AAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCA...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAATGGTCCACGCTGACATaGCTGCAGTCTTTGAGGCTT +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLEWSTLT*LQSLRL
Trigger: AAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCA...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAGGGGAATTGCCACGCTaGGATTCCTTGTGTGGTCCA +
Preference number: 5 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSGELPR*DSLCGP
Trigger: TGGACCACACAAGGAATCCAAGCGTGGCAATTCCCC...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCCTTGGTGAAAAGCTTTaGAGACGGCCTGAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: ISALLLQEDVISSARASSLGEKL*RRPECL
Trigger: CAAACACTCAGGCCGTCTCAAAAGCTTTTCACCAAG...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACATAGGCACAAAGTCTaGGGAGACAGATACGGCCCA +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEHRHKV*GDRYGP
Trigger: TGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGGTCCGTAGAAACTTTTaGCGTTTCTTCAATCCGTTC +
Preference number: 5 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQVRRNF*RFFNPF
Trigger: GAACGGATTGAAGAAACGCAAAAAGTTTCTACGGAC...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACCAAAATCGCATAGCTaGACAACGCCAGACTGGGAG +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEPKSHS*TTPDWE
Trigger: CTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTGG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAACAGCCTTGCCATACTaGACATCACCAACCAATAGT +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRTALPY*TSPTNS
Trigger: ACTATTGGTTGGTGATGTCAAGTATGGCAAGGCTGT...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AATCATGGTGTAGGAGCTCAGCACAGAAGGGTCTTTTGTCGGGGTCAATATGTAAGAGGTTCTCTTTCCTaGATTTCAGGCAACCTTACT +
Preference number: 5 (lower is better)
Translates to: NHGVGAQHRRVFCRGQYVRGSLS*ISGNLT
Trigger: AGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTCT...TACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAGCTCCTACACCATGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CAA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCTATTTTGTTGTGGCTaGTCCTACTGTCATGGAGAC +
Preference number: 5 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLLFCCG*SYCHGD
Trigger: GTCTCCATGACAGTAGGACAAGCCACAACAAAATAG...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGGTTGAAGGCACTATTTaGTTGTGGCTTGTCCTACTG +
Preference number: 5 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLVEGTI*LWLVLL
Trigger: CAGTAGGACAAGCCACAACAAAATAGTGCCTTCAAC...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAGTTGGGGAGGGCCATTaGTTCAATCTTCCTTTGAAA +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRVGEGH*FNLPLK
Trigger: TTTCAAAGGAAGATTGAACAAATGGCCCTCCCCAAC...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAAAGCCGAAGCGCCATTaGGCTTTAAGTATTACCTGT +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRKPKRH*ALSITC
Trigger: ACAGGTAATACTTAAAGCCAAATGGCGCTTCGGCTT...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTCCAAAATCGCATAGCTaGACAACGCCAGACTGGGAG +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLPKSHS*TTPDWE
Trigger: CTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTGG...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAACACACATCAACAGCCTaGCCATACTTGACATCACCA +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLEHTSTA*PYLTSP
Trigger: TGGTGATGTCAAGTATGGCAAGGCTGTTGATGTGTG...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTACACACATCAACAGCCTaGCCATACTTGACATCACCA +
Preference number: 5 (lower is better)
Translates to: SKSFERGFSVTLALVWFLHTSTA*PYLTSP
Trigger: TGGTGATGTCAAGTATGGCAAGGCTGTTGATGTGTG...TAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGAGGTTCTCTTTCCTaGATTTCAGGCAACCTTACT +
Preference number: 5 (lower is better)
Translates to: ISALLLQEDVISSARASSRGSLS*ISGNLT
Trigger: AGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTCT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAAAACTGCAAGGCAATaGATCCTAGAACCTCAACCA +
Preference number: 5 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPKTARQ*ILEPQP
Trigger: TGGTTGAGGTTCTAGGATCAATTGCCTTGCAGTTTT...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS TCA 90 bp CGTTCGCATAGAAAGACCCAAAGGTTTTCAACTTGGAAACAAATTTaGGGTGAAATGCATATGGTTCGCAGGTCCAAAAGATGCTGCCTA +
Preference number: 5 (lower is better)
Translates to: RSHRKTQRFSTWKQI*GEMHMVRRSKRCCL
Trigger: TAGGCAGCATCTTTTGGACCTGCGAACCATATGCATTTCACCTCAAATTTGTTTCCAAGTTGAAAACCTTTGGGTCTTTCTATGCGAACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS-3UTR CAA 90 bp CACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGAGTTGCTTTAGTAACTaGATTTCTCGCATTGCAATC +
Preference number: 5 (lower is better)
Translates to: HSCCKKMSSQVQEHHPVQSCFSN*ISRIAI
Trigger: GATTGCAATGCGAGAAATCAAGTTACTAAAGCAACT...CTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAACAGCCTTGCCATACTaGACATCACCAACCAATAGT +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLETALPY*TSPTNS
Trigger: ACTATTGGTTGGTGATGTCAAGTATGGCAAGGCTGT...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAAGCTCCTGATGCCTaGGAATTAGATTACCTAAAC +
Preference number: 5 (lower is better)
Translates to: ISALLLQEDVISSARASSKAPDA*ELDYLN
Trigger: GTTTAGGTAATCTAATTCCAAGGCATCAGGAGCTTT...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGAAGGCACTATTTTGTaGTGGCTTGTCCTACTGTCA +
Preference number: 5 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSEGTIL*WLVLLS
Trigger: TGACAGTAGGACAAGCCACAACAAAATAGTGCCTTC...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAGTTGAAGGCACTATTTaGTTGTGGCTTGTCCTACTG +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLEVEGTI*LWLVLL
Trigger: CAGTAGGACAAGCCACAACAAAATAGTGCCTTCAAC...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ATATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCTTATCCATACTAATGTaGTCAAACAGCTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: ISALLLQEDVISSARASSLSILM*SNSWSQ
Trigger: CTGTGACCAGCTGTTTGACAACATTAGTATGGATAA...GGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAAGTCCGTAGAAACTTTTaGCGTTTCTTCAATCCGTTC +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLEVRRNF*RFFNPF
Trigger: GAACGGATTGAAGAAACGCAAAAAGTTTCTACGGAC...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TATCAGCACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAAGTTGCTTTAGTAACTaGATTTCTCGCATTGCAATC +
Preference number: 5 (lower is better)
Translates to: YQHSCCKKMSSQVQEHHPSCFSN*ISRIAI
Trigger: GATTGCAATGCGAGAAATCAAGTTACTAAAGCAACT...TGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGTGCTGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCCAAGTCATCAAGAATaGTGTGGTCAACAAATTCAA +
Preference number: 5 (lower is better)
Translates to: TNARVVVSHSKEVSLSRLPSHQE*CGQQIQ
Trigger: TTGAATTTGTTGACCACACAATTCTTGATGACTTGG...CAAGCGTGACAGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp ACTCTTGCTGCAAGAAGATGTCATCTCAAGTGCAAGAGCATCATCCAGTTCAGACCAAGTCATCAAGAATaGTGTGGTCAACAAATTCAA +
Preference number: 5 (lower is better)
Translates to: TLAARRCHLKCKSIIQFRPSHQE*CGQQIQ
Trigger: TTGAATTTGTTGACCACACAATTCTTGATGACTTGG...TCTGAACTGGATGATGCTCTTGCACTTGAGATGACATCTTCTTGCAGCAAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTGCACAGAAGGGTCTTTaGTCGGGGTCAATATGTAAG +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLAQKGL*SGSICK
Trigger: CTTACATATTGACCCCGACAAAAGACCCTTCTGTGC...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp CACCAGAATCTTACAATACATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCAGGAGACAGCTGGCATTaGAAGCTCTATTGCCTTTTT +
Preference number: 5 (lower is better)
Translates to: HQNLTIHGTNQCQSCSKSGDSWH*KLYCLF
Trigger: AAAAAGGCAATAGAGCTTCAAATGCCAGCTGTCTCC...TGACTTACTACAACTCTGGCATTGGTTAGTTCCATGTATTGTAAGATTCTGGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAACTATTTTGTTGTGGCTaGTCCTACTGTCATGGAGAC +
Preference number: 5 (lower is better)
Translates to: VLINSVWSISTRILQYMELFCCG*SYCHGD
Trigger: GTCTCCATGACAGTAGGACAAGCCACAACAAAATAG...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTCTTGGTGAAAAGCTTTaGAGACGGCCTGAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLLGEKL*RRPECL
Trigger: CAAACACTCAGGCCGTCTCAAAAGCTTTTCACCAAG...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAACTCTGTACCATCGGGTaGCCACATAATCAGTATAAA +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALELCTIG*PHNQYK
Trigger: TTTATACTGATTATGTGGCAACCCGATGGTACAGAG...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAAGAGGTTCTCTTTCCTaGATTTCAGGCAACCTTACT +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALERGSLS*ISGNLT
Trigger: AGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTCT...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAAATTTTGGGATCAGCATaGGTATCCTGTACCACAAGT +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEILGSA*VSCTTS
Trigger: ACTTGTGGTACAGGATACCAATGCTGATCCCAAAAT...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAAATTTTGGGATCAGCATaGGTATCCTGTACCACAAGT +
Preference number: 5 (lower is better)
Translates to: VLINSVWSISTRILQYMEILGSA*VSCTTS
Trigger: ACTTGTGGTACAGGATACCAATGCTGATCCCAAAAT...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCAGGAGACAGCTGGCATTaGAAGCTCTATTGCCTTTTT +
Preference number: 5 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAGDSWH*KLYCLF
Trigger: AAAAAGGCAATAGAGCTTCAAATGCCAGCTGTCTCC...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCAGAAGGCACTATTTTGTaGTGGCTTGTCCTACTGTCA +
Preference number: 5 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVAEGTIL*WLVLLS
Trigger: TGACAGTAGGACAAGCCACAACAAAATAGTGCCTTC...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTGTTGGGGAGGGCCATTaGTTCAATCTTCCTTTGAAA +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLVGEGH*FNLPLK
Trigger: TTTCAAAGGAAGATTGAACAAATGGCCCTCCCCAAC...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp AAGTCATTCGAAAGAGGTTTCTCTGTCACGCTTGCATTAGTGTGGTTCTTAGAATTTTGGATCCATGCATaGGAAAAGATGTGTGGAATG +
Preference number: 5 (lower is better)
Translates to: KSFERGFSVTLALVWFLEFWIHA*EKMCGM
Trigger: CATTCCACACATCTTTTCCAATGCATGGATCCAAAA...TTCTAAGAACCACACTAATGCAAGCGTGACAGAGAAACCTCTTTCGAATGACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp GTCCTGATCAATTCTGTATGGAGCATTAGCACCAGAATCTTACAATACATGGAACCACCACCTATAGACTaGTACATTGAAACCCCTTAT +
Preference number: 5 (lower is better)
Translates to: VLINSVWSISTRILQYMEPPPID*YIETPY
Trigger: ATAAGGGGTTTCAATGTACAAGTCTATAGGTGGTGG...TTCCATGTATTGTAAGATTCTGGTGCTAATGCTCCATACAGAATTGATCAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TTTCAGTCTAGTCTGATACATAGTGTATTACAGGTCCAGCCTTATATTGTAGCACTCTGTACCATCGGGTaGCCACATAATCAGTATAAA +
Preference number: 5 (lower is better)
Translates to: FQSSLIHSVLQVQPYIVALCTIG*PHNQYK
Trigger: TTTATACTGATTATGTGGCAACCCGATGGTACAGAG...TGCTACAATATAAGGCTGGACCTGTAATACACTATGTATCAGACTAGACTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp AGCCAACTTAGTTTATTCCTCCCACCTAAAAAGTTTTGGATCCATGCATTGGAATTTTGGATCCATGCATaGGAAAAGATGTGTGGAATG +
Preference number: 5 (lower is better)
Translates to: SQLSLFLPPKKFWIHALEFWIHA*EKMCGM
Trigger: CATTCCACACATCTTTTCCAATGCATGGATCCAAAA...TTCCAATGCATGGATCCAAAACTTTTTAGGTGGGAGGAATAAACTAAGTTGGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTATTGAAACCCCTTATTaGCCTCCTCTTGAATGTCCT +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLIETPY*PPLECP
Trigger: AGGACATTCAAGAGGAGGCAAATAAGGGGTTTCAAT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp CATGGAACTAACCAATGCCAGAGTTGTAGTAAGTCATTCGAAAGAGGTTTCTCTATGCTGCAGAATCTATaGGCAGTGTTTTTCAAAGTA +
Preference number: 5 (lower is better)
Translates to: HGTNQCQSCSKSFERGFSMLQNL*AVFFKV
Trigger: TACTTTGAAAAACACTGCCAATAGATTCTGCAGCAT...AGAGAAACCTCTTTCGAATGACTTACTACAACTCTGGCATTGGTTAGTTCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TCTTTCCTTGATTTCAGGCAACCTTACTCCAGCAAACACAGGATTTTTATTAAAGTCCGTAGAAACTTTTaGCGTTTCTTCAATCCGTTC +
Preference number: 5 (lower is better)
Translates to: SFLDFRQPYSSKHRIFIKVRRNF*RFFNPF
Trigger: GAACGGATTGAAGAAACGCAAAAAGTTTCTACGGAC...TTTAATAAAAATCCTGTGTTTGCTGGAGTAAGGTTGCCTGAAATCAAGGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506234.1
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTAAAGCTCCTGATGCCTaGGAATTAGATTACCTAAAC +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLKAPDA*ELDYLN
Trigger: GTTTAGGTAATCTAATTCCAAGGCATCAGGAGCTTT...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTACAAGAAAATTAGCTaGCCATCCCTACATCCAAAG +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLYKKIS*PSLHPK
Trigger: CTTTGGATGTAGGGATGGCAAGCTAATTTTCTTGTA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS-3UTR CAA 90 bp TTACAGAAGTCAAAGATACACATCTACCCATGGACAGGAGTTACATATTCACTTTTAAGTATTACCTGTTaGCCATGCTGCAGAATCTAT +
Preference number: 5 (lower is better)
Translates to: LQKSKIHIYPWTGVTYSLLSITC*PCCRIY
Trigger: ATAGATTCTGCAGCATGGCAAACAGGTAATACTTAA...AAGTGAATATGTAACTCCTGTCCATGGGTAGATGTGTATCTTTGACTTCTGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307465.9
CDS TCA 72 bp CCCCTTCACCTAGGGCTCGGCCCAGGTTCTGCTCCCTaGCACGCAGAGGCCCTGCGTCCCCACACGCCTTGG +
Preference number: 6 (lower is better)
Translates to: PLHLGLGPGSAP*HAEALRPHTPW
Trigger: CCAAGGCGTGTGGGGACGCAGGGCCTCTGCGTGTCAGGGAGCAGAACCTGGGCCGAGCCCTAGGTGAAGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS GCA 72 bp GCTCGTAAGGCGCCCAGTACCTGGAGCCTGGGAACCTaGACCGCTCCAACTACCCCTGGGCGAAGGCGTTGG +
Preference number: 6 (lower is better)
Translates to: ARKAPSTWSLGT*TAPTTPGRRRW
Trigger: CCAACGCCTTCGCCCAGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 72 bp ACCTCCCAGCTCGTAAGGCGCCCAGTACCTGGAGCCTaGGAACCTGCACCGCTCCAACTACCCCTGGGCGAA +
Preference number: 6 (lower is better)
Translates to: TSQLVRRPVPGA*EPAPLQLPLGE
Trigger: TTCGCCCAGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGCTGGGAGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 72 bp AGGCACCACCTCCCAGCTCGTAAGGCGCCCAGTACCTaGAGCCTGGGAACCTGCACCGCTCCAACTACCCCT +
Preference number: 6 (lower is better)
Translates to: RHHLPARKAPST*SLGTCTAPTTP
Trigger: AGGGGTAGTTGGAGCGGTGCAGGTTCCCAGGCTCCAGGTACTGGGCGCCTTACGAGCTGGGAGGTGGTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 72 bp TCTGATTGGCCGAGCCGAGTCGTCACGAGCCATGATTaGCTCAGGGCCAACCACCCCGCCCCTTCACCTAGG +
Preference number: 6 (lower is better)
Translates to: SDWPSRVVTSHD*LRANHPAPSPR
Trigger: CCTAGGTGAAGGGGCGGGGTGGTTGGCCCTGAGCCAATCATGGCTCGTGACGACTCGGCTCGGCCAATCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000429927.6
CDS GCA 72 bp GCCGCAAGCTCACACTTAGGAGGACCACGGGCCGCATaGTGTCGTCGTCAAGGCAACGACCTCACTCTGTCC +
Preference number: 6 (lower is better)
Translates to: AASSHLGGPRAA*CRRQGNDLTLS
Trigger: GGACAGAGTGAGGTCGTTGCCTTGACGACGACAGCATGCGGCCCGTGGTCCTCCTAAGTGTGAGCTTGCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CAA 90 bp TCAAGGCAACGACCTCACTCTGTCCCCAACCATAGGCACAAAGTCTaGGGAGACAGATACGGCCCAGGTCAGAATGCGTTCACGGCAGGC +
Preference number: 6 (lower is better)
Translates to: SRQRPHSVPNHRHKV*GDRYGPGQNAFTAG
Trigger: GCCTGCCGTGAACGCATTCTGACCTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATGGTTGGGGACAGAGTGAGGTCGTTGCCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CAA 72 bp CGACCTCACTCTGTCCCCAACCATAGGCACAAAGTCTaGGGAGACAGATACGGCCCAGGTCAGAATGCGTTC +
Preference number: 6 (lower is better)
Translates to: RPHSVPNHRHKV*GDRYGPGQNAF
Trigger: GAACGCATTCTGACCTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATGGTTGGGGACAGAGTGAGGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS TCA 72 bp ATGCTGCCTAGCAAACTAGCAATTCCAGCGCTGTTGTaGTTTCTTCTGCGGACGCAGTCACGAGTCCAGGGC +
Preference number: 6 (lower is better)
Translates to: MLPSKLAIPALL*FLLRTQSRVQG
Trigger: GCCCTGGACTCGTGACTGCGTCCGCAGAAGAAATCACAACAGCGCTGGAATTGCTAGTTTGCTAGGCAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CCA 72 bp GACCTCACTCTGTCCCCAACCATAGGCACAAAGTCTTaGGAGACAGATACGGCCCAGGTCAGAATGCGTTCA +
Preference number: 6 (lower is better)
Translates to: DLTLSPTIGTKS*ETDTAQVRMRS
Trigger: TGAACGCATTCTGACCTGGGCCGTATCTGTCTCCCAAGACTTTGTGCCTATGGTTGGGGACAGAGTGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CCA 72 bp GTAAGTGGGGGAATTGCCACGCTTGGATTCCTTGTGTaGTCCACGCTGACATTGCTGCAGTCTTTGAGGCTT +
Preference number: 6 (lower is better)
Translates to: VSGGIATLGFLV*STLTLLQSLRL
Trigger: AAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 90 bp GGGGGAATTGCCACGCTTGGATTCCTTGTGTGGTCCACGCTGACATaGCTGCAGTCTTTGAGGCTTGTTGAAGGCACTATTTTGTTGTGG +
Preference number: 6 (lower is better)
Translates to: GGIATLGFLVWSTLT*LQSLRLVEGTILLW
Trigger: CCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 72 bp GCCACGCTTGGATTCCTTGTGTGGTCCACGCTGACATaGCTGCAGTCTTTGAGGCTTGTTGAAGGCACTATT +
Preference number: 6 (lower is better)
Translates to: ATLGFLVWSTLT*LQSLRLVEGTI
Trigger: AATAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CCA 72 bp AGAAAGATTGTGTGTAAGTGGGGGAATTGCCACGCTTaGATTCCTTGTGTGGTCCACGCTGACATTGCTGCA +
Preference number: 6 (lower is better)
Translates to: RKIVCKWGNCHA*IPCVVHADIAA
Trigger: TGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACACACAATCTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 90 bp ACGCTTGGATTCCTTGTGTGGTCCACGCTGACATTGCTGCAGTCTTaGAGGCTTGTTGAAGGCACTATTTTGTTGTGGCTTGTCCTACTG +
Preference number: 6 (lower is better)
Translates to: TLGFLVWSTLTLLQS*RLVEGTILLWLVLL
Trigger: CAGTAGGACAAGCCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 90 bp TCAGTCCCCATTCCAGAATTAATGCTGGGAGCAACTGCAGAAAGATaGTGTGTAAGTGGGGGAATTGCCACGCTTGGATTCCTTGTGTGG +
Preference number: 6 (lower is better)
Translates to: SVPIPELMLGATAER*CVSGGIATLGFLVW
Trigger: CCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACACACAATCTTTCTGCAGTTGCTCCCAGCATTAATTCTGGAATGGGGACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS GCA 72 bp CTCAGTCCCCATTCCAGAATTAATGCTGGGAGCAACTaGAGAAAGATTGTGTGTAAGTGGGGGAATTGCCAC +
Preference number: 6 (lower is better)
Translates to: LSPHSRINAGSN*RKIVCKWGNCH
Trigger: GTGGCAATTCCCCCACTTACACACAATCTTTCTGCAGTTGCTCCCAGCATTAATTCTGGAATGGGGACTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 72 bp CTGCAGTCTTTGAGGCTTGTTGAAGGCACTATTTTGTaGTGGCTTGTCCTACTGTCATGGAGACAGCTGGCA +
Preference number: 6 (lower is better)
Translates to: LQSLRLVEGTIL*WLVLLSWRQLA
Trigger: TGCCAGCTGTCTCCATGACAGTAGGACAAGCCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000515793.1
CDS CAA 90 bp CTGACATTGCTGCAGTCTTTGAGGCTTGTTGAAGGCACTATTTTGTaGTGGCTTGTCCTACTGTCATGGAGACAGCTGGCATTTGAAGCT +
Preference number: 6 (lower is better)
Translates to: LTLLQSLRLVEGTIL*WLVLLSWRQLAFEA
Trigger: AGCTTCAAATGCCAGCTGTCTCCATGACAGTAGGACAAGCCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTGCAGCAATGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS TCA 72 bp CTGCCAATGTTCGCGCAAATCCAAAATCGCATAGCTTaGCAACGCCAGACTGGGAGACTAATATATTCTCTG +
Preference number: 6 (lower is better)
Translates to: LPMFAQIQNRIA*QRQTGRLIYSL
Trigger: CAGAGAATATATTAGTCTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTGGATTTGCGCGAACATTGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CAA 72 bp GCTGCCAATGTTCGCGCAAATCCAAAATCGCATAGCTaGACAACGCCAGACTGGGAGACTAATATATTCTCT +
Preference number: 6 (lower is better)
Translates to: AANVRANPKSHS*TTPDWETNIFS
Trigger: AGAGAATATATTAGTCTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTGGATTTGCGCGAACATTGGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS CCA 72 bp GCAAATCCAAAATCGCATAGCTTGACAACGCCAGACTaGGAGACTAATATATTCTCTGGCTTTATATCTCTG +
Preference number: 6 (lower is better)
Translates to: ANPKSHSLTTPD*ETNIFSGFISL
Trigger: CAGAGATATAAAGCCAGAGAATATATTAGTCTCCCAGTCTGGCGTTGTCAAGCTATGCGATTTTGGATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000307465.9
ENST00000429927.6
CDS TCA 72 bp AGAAAGACCCAAAGGTTTTCAACTTGGAAACAAATTTaGGGTGAAATGCATATGGTTCGCAGGTCCAAAAGA +
Preference number: 6 (lower is better)
Translates to: RKTQRFSTWKQI*GEMHMVRRSKR
Trigger: TCTTTTGGACCTGCGAACCATATGCATTTCACCTCAAATTTGTTTCCAAGTTGAAAACCTTTGGGTCTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1
CDS CAA 72 bp AACTTGATTTCTCGCATTGCAATCTTTTTAACCATTTaGTCATCGTCACTTTCTAAGAACTTCTTTATGGCC +
Preference number: 6 (lower is better)
Translates to: NLISRIAIFLTI*SSSLSKNFFMA
Trigger: GGCCATAAAGAAGTTCTTAGAAAGTGACGATGACAAAATGGTTAAAAAGATTGCAATGCGAGAAATCAAGTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000307465.9
ENST00000429927.6
ENST00000506234.1