Pregenerated sensors for CDK5 (Homo sapiens)
Ensembl gene IDs: ENSG00000164885Ensembl transcript IDs: ENST00000469108.1, ENST00000476691.1, ENST00000487703.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATGCAACTGTGCCCAGCAACGGGTCGGCTCCTCTCCTCACCCTGTaGTTCGCTCCACCCCACCCACCTTTCAGCACCTGGTTCAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: HATVPSNGSAPLLTL*FAPPHPPFSTWFRV Trigger: CACTCTGAACCAGGTGCTGAAAGGTGGGTGGGGTGGAGCGAAGCACAGGGTGAGGAGAGGAGCCGACCCGTTGCTGGGCACAGTTGCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS GCA 90 bp | GAGGAGAGAGGGAGAAGGGAGTCAGACGCCCTGAACATGCAACTGTaGCCAGCAACGGGTCGGCTCCTCTCCTCACCCTGTGCTTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: EERGRRESDALNMQL*PATGRLLSSPCASL Trigger: GAGCGAAGCACAGGGTGAGGAGAGGAGCCGACCCGTTGCTGGGCACAGTTGCATGTTCAGGGCGTCTGACTCCCTTCTCCCTCTCTCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS CCA 90 bp | AGTGCTGCTGAGGCTGGGGTGAGAAATTTCAGGAAGTGTCGCGGTTaGGAGGTCGGGTCTACTGGGAACGCTAAGGTTGGAGTGAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: SAAEAGVRNFRKCRG*EVGSTGNAKVGVRA Trigger: GGCTCTCACTCCAACCTTAGCGTTCCCAGTAGACCCGACCTCCCAACCGCGACACTTCCTGAAATTTCTCACCCCAGCCTCAGCAGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487703.5 |
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| CDS CCA 90 bp | CTCCTCACCCTGTGCTTCGCTCCACCCCACCCACCTTTCAGCACCTaGTTCAGAGTGACACCATTCATTCGCCATCCAGGACCTGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LLTLCFAPPHPPFST*FRVTPFIRHPGPAL Trigger: TAAAGCAGGTCCTGGATGGCGAATGAATGGTGTCACTCTGAACCAGGTGCTGAAAGGTGGGTGGGGTGGAGCGAAGCACAGGGTGAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS TCA 90 bp | TGTGCTTCGCTCCACCCCACCCACCTTTCAGCACCTGGTTCAGAGTaGCACCATTCATTCGCCATCCAGGACCTGCTTTATACTGTGCTA | + |
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Preference number: 5 (lower is better) Translates to: CASLHPTHLSAPGSE*HHSFAIQDLLYTVL Trigger: TAGCACAGTATAAAGCAGGTCCTGGATGGCGAATGAATGGTGTCACTCTGAACCAGGTGCTGAAAGGTGGGTGGGGTGGAGCGAAGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS GCA 72 bp | GGGAGAAGGGAGTCAGACGCCCTGAACATGCAACTGTaGCCAGCAACGGGTCGGCTCCTCTCCTCACCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GRRESDALNMQL*PATGRLLSSPC Trigger: ACAGGGTGAGGAGAGGAGCCGACCCGTTGCTGGGCACAGTTGCATGTTCAGGGCGTCTGACTCCCTTCTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS TCA 72 bp | CGGGGTGAGGTTGTCCAAGTGCTGCTGAGGCTGGGGTaGGAAATTTCAGGAAGTGTCGCGGTTGGGAGGTCG | + |
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Preference number: 6 (lower is better) Translates to: RGEVVQVLLRLG*EISGSVAVGRS Trigger: CGACCTCCCAACCGCGACACTTCCTGAAATTTCTCACCCCAGCCTCAGCAGCACTTGGACAACCTCACCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487703.5 |
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| CDS CCA 72 bp | TCCCCACCTTCCTGGACCATACAGCCTAATGGGCCTTaGCAGGTGGATCCTAGATCCGGCCTAGATCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SPPSWTIQPNGP*QVDPRSGLDPS Trigger: GCTGGGATCTAGGCCGGATCTAGGATCCACCTGCCAAGGCCCATTAGGCTGTATGGTCCAGGAAGGTGGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS CCA 72 bp | CGGCCTAGATCCCAGCCCATGCTGATCTTCCCTTCCTaGCCGCATCTGAGTATGCACGCCGTGAACATCAAC | + |
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Preference number: 6 (lower is better) Translates to: RPRSQPMLIFPS*PHLSMHAVNIN Trigger: GTTGATGTTCACGGCGTGCATACTCAGATGCGGCCAGGAAGGGAAGATCAGCATGGGCTGGGATCTAGGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476691.1 |
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| CDS CCA 72 bp | GAGGCTGGGGTGAGAAATTTCAGGAAGTGTCGCGGTTaGGAGGTCGGGTCTACTGGGAACGCTAAGGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: EAGVRNFRKCRG*EVGSTGNAKVG Trigger: TCCAACCTTAGCGTTCCCAGTAGACCCGACCTCCCAACCGCGACACTTCCTGAAATTTCTCACCCCAGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487703.5 |
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| CDS CCA 72 bp | ATGAGTGGGGGAATGGGACAGAGTTTAACCTCAATCTaGGCCCCTATACCTTCCCAAGGCTACTGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: MSGGMGQSLTSI*APIPSQGYCPP Trigger: TGGAGGACAGTAGCCTTGGGAAGGTATAGGGGCCCAGATTGAGGTTAAACTCTGTCCCATTCCCCCACTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000469108.1 |
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