RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDK4 (Homo sapiens)

Ensembl gene IDs: ENSG00000135446

Ensembl transcript IDs: ENST00000257904.11, ENST00000312990.10, ENST00000546489.5, ENST00000547281.5, ENST00000547853.1, ENST00000550419.5, ENST00000551706.1, ENST00000551800.5, ENST00000552254.5, ENST00000552388.1, ENST00000552862.1, ENST00000553237.5

Found 128 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTAACCAGTCTTTAAGGTTTTGCAGGAAAGTCCCTTCTTCCAAGTaGTTTTTCCAAATCGCACAATGGCAAAGCCAAACAGAGGAAGAA +
Preference number: 1 (lower is better)
Translates to: FNQSLRFCRKVPSSK*FFQIAQWQSQTEEE
Trigger: TTCTTCCTCTGTTTGGCTTTGCCATTGTGCGATTTGGAAAAACCACTTGGAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTGGTTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
3UTR-3UTR CCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCTGGGCGGGGCCCTCTaGGGGGAAAGGCTCCACGGG +
Preference number: 2 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQLGGAL*GERLHG
Trigger: CCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAG...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR CCA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCTGGGCGGGGCCCTCTaGGGGGAAAGGCTCCACGGG +
Preference number: 2 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFLGGAL*GERLHG
Trigger: CCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAG...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR GCA 90 bp TGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCTCAGGTACCACCGACTaGACTGGGCGGGGCCCTCTG +
Preference number: 2 (lower is better)
Translates to: CRARKAEIRLCGLKVSISSGTTD*TGRGPL
Trigger: CAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGA...GGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR GCA 90 bp TCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCACCGGATCTCGGTGAACGATaGAATTGGCATGAAGGAAAT +
Preference number: 2 (lower is better)
Translates to: SAFPAAAVLPTPPSQVPPDLGER*NWHEGN
Trigger: ATTTCCTTCATGCCAATTGCATCGTTCACCGAGATC...CGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553237.5
3UTR-3UTR CCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCATCTCTGTAGAAAGATaGAGGAGGACCCTCCATAGC +
Preference number: 2 (lower is better)
Translates to: GGPSIASEIKAKIALSVSISVER*RRTLHS
Trigger: GCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGAT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
3UTR-3UTR CCA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCGGTAGCTGTAGATTCTaGCCAGGCCAAAGTCAGCCA +
Preference number: 2 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFGSCRF*PGQSQP
Trigger: TGGCTGACTTTGGCCTGGCCAGAATCTACAGCTACC...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553237.5
3UTR-3UTR GCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGGTTGCATATGTGGACTaGAGAAGAACTTCGGGAGCT +
Preference number: 2 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQVAYVD*RRTSGA
Trigger: AGCTCCCGAAGTTCTTCTGCAGTCCACATATGCAAC...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553237.5
3UTR-3UTR GCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGTCAGGTCAAAGATTTTaGCCAACTGGTCGGCTTCAG +
Preference number: 2 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQSGQRF*PTGRLQ
Trigger: CTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGA...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553237.5
3UTR-3UTR CCA 90 bp TGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCAGAGATTCGCTTGTGTaGGTTAAAAGTCAGCATTTC +
Preference number: 2 (lower is better)
Translates to: CGLKVSISSSSCAPDSSIRDSLV*VKSQHF
Trigger: GAAATGCTGACTTTTAACCCACACAAGCGAATCTCT...GATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR GCA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCGATAAAGGCAAAGATTaGCCTCTCAGTGTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: RARKAEIRLCGLKVSISSDKGKD*PLSVQK
Trigger: CTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATC...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312990.10
3UTR-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCTGTCCAGAAGGGAAATaGCAGCTTTTCTTCCTTCCA +
Preference number: 2 (lower is better)
Translates to: VISVERWRRTLHSLRDKGCPEGK*QLFFLP
Trigger: TGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACA...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
3UTR-3UTR CCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGTGTCCAGAAGGGAAATaGCAGCTTTTCTTCCTTCCA +
Preference number: 2 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQCPEGK*QLFFLP
Trigger: TGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACA...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
3UTR-3UTR CAA 90 bp TGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCAAGGCAGAGATTCGCTaGTGTGGGTTAAAAGTCAGC +
Preference number: 3 (lower is better)
Translates to: CGLKVSISSSSCAPDSSIKAEIR*CGLKVS
Trigger: GCTGACTTTTAACCCACACAAGCGAATCTCTGCCTT...GATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR CAA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCATGGCAGCCACTCCATaGCTCACTCCGGATTACCTT +
Preference number: 3 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFMAATP*LTPDYL
Trigger: AAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312990.10
3UTR-3UTR CAA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAAGGCAGAGATTCGCTaGTGTGGGTTAAAAGTCAGC +
Preference number: 3 (lower is better)
Translates to: RARKAEIRLCGLKVSISSKAEIR*CGLKVS
Trigger: GCTGACTTTTAACCCACACAAGCGAATCTCTGCCTT...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
3UTR-3UTR CAA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCCAGTCTTTAAGGTTTaGCAGGAAAGTCCCTTCTTC +
Preference number: 3 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQPVFKV*QESPFF
Trigger: GAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTGG...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR GCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCCACGCCAGCCCGGGGTaGTGTGGGGGCGGCCCGTTA +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSHASPG*CGGGPL
Trigger: TAACGGGCCGCCCCCACAGCACCCCGGGCTGGCGTG...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCCACGCCAGCCCGGGGTaGTGTGGGGGCGGCCCGTTA +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALHASPG*CGGGPL
Trigger: TAACGGGCCGCCCCCACAGCACCCCGGGCTGGCGTG...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCGGTCCGGAGCAGCTaGACGCAGAGGGCCCGACCA +
Preference number: 4 (lower is better)
Translates to: GGGPSIASEIKAKIALSVSVRSS*TQRARP
Trigger: TGGTCGGGCCCTCTGCGTCCAGCTGCTCCGGACCGA...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGACTGGGCGGGGCCCTCTaGGGGGAAAGGCTCCACGGG +
Preference number: 4 (lower is better)
Translates to: GSKVISVERWRRTLHSLRLGGAL*GERLHG
Trigger: CCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAG...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCACGCCAGCCCGGGGTaGTGTGGGGGCGGCCCGTTA +
Preference number: 4 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQHASPG*CGGGPL
Trigger: TAACGGGCCGCCCCCACAGCACCCCGGGCTGGCGTG...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCCAGCCCGGGGTGCTGTaGGGGCGGCCCGTTATCGGG +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGQPGVL*GRPVIG
Trigger: CCCGATAACGGGCCGCCCCCACAGCACCCCGGGCTG...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp TGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCCAGCCCGGGGTGCTGTaGGGGCGGCCCGTTATCGGG +
Preference number: 4 (lower is better)
Translates to: CRARKAEIRLCGLKVSISQPGVL*GRPVIG
Trigger: CCCGATAACGGGCCGCCCCCACAGCACCCCGGGCTG...GGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp TCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCACCGACAAAGTGGCCACTGTaGGGATCACGGGCCTTGTAC +
Preference number: 4 (lower is better)
Translates to: SAFPAAAVLPTPPSQVPPTKWPL*GSRALY
Trigger: GTACAAGGCCCGTGATCCCCACAGTGGCCACTTTGT...CGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAACTGGGCGGGGCCCTCTaGGGGGAAAGGCTCCACGGG +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKLGGAL*GERLHG
Trigger: CCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAG...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR TCA 90 bp AAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCGGACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: KVSISSSSCAPDSSISGTGLSHS*GPQSGH
Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCC...GGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR TCA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGCCTCACGAACTGTGCTaGTGGGAAGGCCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: GGGPSIASEIKAKIALSVPHELC*WEGLLH
Trigger: GTGGAGGAGGCCTTCCCATCAGCACAGTTCGTGAGG...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCGTGACCGCCACCCATaGGCTGAGGGGCGGACAGGA +
Preference number: 4 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFRDRHP*AEGRTG
Trigger: TCCTGTCCGCCCCTCAGCGCATGGGTGGCGGTCACG...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGTCGGTCCGGAGCAGCTaGACGCAGAGGGCCCGACCA +
Preference number: 4 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQSVRSS*TQRARP
Trigger: TGGTCGGGCCCTCTGCGTCCAGCTGCTCCGGACCGA...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp TCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCACCGGGTAGCTGTAGATTCTaGCCAGGCCAAAGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: SAFPAAAVLPTPPSQVPPGSCRF*PGQSQP
Trigger: TGGCTGACTTTGGCCTGGCCAGAATCTACAGCTACC...CGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR TCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCACACCAGGGTTACCTTaGTCTCCCGGTCAGTTCGGG +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSTPGLP*SPGQFG
Trigger: CCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR TCA 90 bp CGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCCCCACCCTCACCATGTaGCCAGCTGCCAAAGAGGCG +
Preference number: 4 (lower is better)
Translates to: RKAEIRLCGLKVSISSSSPTLTM*PAAKEA
Trigger: CGCCTCTTTGGCAGCTGGTCACATGGTGAGGGTGGG...GCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR GCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCTCAGGTACCACCGACTaGACTGGGCGGGGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGSGTTD*TGRGPL
Trigger: CAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGA...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCTCAGGTACCACCGACTaGACTGGGCGGGGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: RARKAEIRLCGLKVSISSSGTTD*TGRGPL
Trigger: CAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGA...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAATCGGTCCGGAGCAGCTaGACGCAGAGGGCCCGACCA +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKSVRSS*TQRARP
Trigger: TGGTCGGGCCCTCTGCGTCCAGCTGCTCCGGACCGA...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCGGTCAGTTCGGGATGTaGCACAGACGTCCATCAGCC +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSGQFGM*HRRPSA
Trigger: GGCTGATGGACGTCTGTGCCACATCCCGAACTGACC...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCGAACGCCGGACGTTCTaGGCACGTGACCGCCACCCA +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGERRTF*ARDRHP
Trigger: TGGGTGGCGGTCACGTGCCCAGAACGTCCGGCGTTC...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR TCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCACTCCTGACCTCAGGTaGTCCACCCGCGTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGTPDLR*STRVGL
Trigger: GAGGCCAACGCGGGTGGATCACCTGAGGTCAGGAGT...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR TCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGACTCCTGACCTCAGGTaGTCCACCCGCGTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQTPDLR*STRVGL
Trigger: GAGGCCAACGCGGGTGGATCACCTGAGGTCAGGAGT...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR GCA 90 bp TCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCACCGAACCACGGGTGTAAGTaGCATCTGGTAGCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: SAFPAAAVLPTPPSQVPPNHGCK*HLVAVD
Trigger: ATCTACAGCTACCAGATGGCACTTACACCCGTGGTT...CGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR TCA 90 bp CGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCGGACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: RKAEIRLCGLKVSISSSSGLSHS*GPQSGH
Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCC...GCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR TCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCGGCGCATCAGATCCTTaGTCGTTTCGGCTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALGASDP*SFRLAS
Trigger: GCTTGCCAGCCGAAACGATCAAGGATCTGATGCGCC...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR GCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCCGGACAACATTGGGATaGTCAAAAGCCTCCAGTCGC +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSRTTLG*SKASSR
Trigger: GCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCG...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTGGCAGCCACTCCATTaGTCACTCCGGATTACCTTC +
Preference number: 4 (lower is better)
Translates to: GGGPSIASEIKAKIALSVWQPLH*SLRITF
Trigger: GAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCA...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCGGCTGGCAAGCCTGGTaGGGGTGCCTTGTCCAGATA +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGGWQAW*GCLVQI
Trigger: TATCTGGACAAGGCACCCCCACCAGGCTTGCCAGCC...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR TCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCGGACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGGLSHS*GPQSGH
Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCC...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR TCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAACCTCACGAACTGTGCTaGTGGGAAGGCCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKPHELC*WEGLLH
Trigger: GTGGAGGAGGCCTTCCCATCAGCACAGTTCGTGAGG...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR TCA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGTCAAGGGGCTCCACTaGCTTCCTAGGCCCTGTAAT +
Preference number: 4 (lower is better)
Translates to: GSKVISVERWRRTLHSLRVKGLH*LPRPCN
Trigger: ATTACAGGGCCTAGGAAGTCAGTGGAGCCCCTTGAC...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCAGGTCCTGGTCTACATaGTCAAACACCAGGGTTACC +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSRSWST*SNTRVT
Trigger: GGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR GCA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGACAAGCCTGGTGGGGGTaGCTTGTCCAGATATGTCCT +
Preference number: 4 (lower is better)
Translates to: GSKVISVERWRRTLHSLRQAWWG*LVQICP
Trigger: AGGACATATCTGGACAAGGCACCCCCACCAGGCTTG...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCACAAAGTGGCCACTGTaGGGATCACGGGCCTTGTAC +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALTKWPL*GSRALY
Trigger: GTACAAGGCCCGTGATCCCCACAGTGGCCACTTTGT...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAACTTGATCGTTTCGGCTaGCAAGCCTGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKLDRFG*QAWWGC
Trigger: GCACCCCCACCAGGCTTGCCAGCCGAAACGATCAAG...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR TCA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCGTCAAGGGGCTCCACTaGCTTCCTAGGCCCTGTAAT +
Preference number: 4 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFVKGLH*LPRPCN
Trigger: ATTACAGGGCCTAGGAAGTCAGTGGAGCCCCTTGAC...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR GCA 90 bp TGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTCAAAGATTTTaGCCAACTGGTCGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: CGLKVSISSSSCAPDSSISGQRF*PTGRLQ
Trigger: CTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGA...GATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR GCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTGGCAGCCACTCCATTaGTCACTCCGGATTACCTTC +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALWQPLH*SLRITF
Trigger: GAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCA...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp TGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCACAAAGTGGCCACTGTaGGGATCACGGGCCTTGTAC +
Preference number: 4 (lower is better)
Translates to: CRARKAEIRLCGLKVSISTKWPL*GSRALY
Trigger: GTACAAGGCCCGTGATCCCCACAGTGGCCACTTTGT...GGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp ATGGCAGCCACTCCATTGCTCACTCCGGATTACCTTCATCCTTATGTAGATAAGGGTCAGTTCGGGATGTaGCACAGACGTCCATCAGCC +
Preference number: 4 (lower is better)
Translates to: MAATPLLTPDYLHPYVDKGQFGM*HRRPSA
Trigger: GGCTGATGGACGTCTGTGCCACATCCCGAACTGACC...CTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCGGTAGCTGTAGATTCTaGCCAGGCCAAAGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALGSCRF*PGQSQP
Trigger: TGGCTGACTTTGGCCTGGCCAGAATCTACAGCTACC...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CCA 90 bp TCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCACCGAGAGATTCGCTTGTGTaGGTTAAAAGTCAGCATTTC +
Preference number: 4 (lower is better)
Translates to: SAFPAAAVLPTPPSQVPPRDSLV*VKSQHF
Trigger: GAAATGCTGACTTTTAACCCACACAAGCGAATCTCT...CGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGCCTCAAAAGGAGAGGTaGGAGGGGAATGTCATTAAG +
Preference number: 4 (lower is better)
Translates to: GGGPSIASEIKAKIALSVPQKER*EGNVIK
Trigger: CTTAATGACATTCCCCTCCCACCTCTCCTTTTGAGG...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp TGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCCGGACAACATTGGGATaGTCAAAAGCCTCCAGTCGC +
Preference number: 4 (lower is better)
Translates to: CRARKAEIRLCGLKVSISRTTLG*SKASSR
Trigger: GCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCG...GGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR GCA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGGATAAAGGCAAAGATTaGCCTCTCAGTGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: GGGPSIASEIKAKIALSVDKGKD*PLSVQK
Trigger: CTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATC...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGATCAGCCGGACAACATTaGGATGCTCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: GSKVISVERWRRTLHSLRSAGQH*DAQKPP
Trigger: TGGAGGCTTTTGAGCATCCCAATGTTGTCCGGCTGA...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCTGTCCAGAAGGGAAATaGCAGCTTTTCTTCCTTCCA +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSCPEGK*QLFFLP
Trigger: TGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACA...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCCATGTCCACAGGTGTTaGATATGTGGACTGCAGAAG +
Preference number: 4 (lower is better)
Translates to: KDGGGPSIASEIKAKIALHVHRC*ICGLQK
Trigger: CTTCTGCAGTCCACATATGCAACACCTGTGGACATG...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CCA 90 bp CGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCCCTCAAAAGGAGAGGTaGGAGGGGAATGTCATTAAG +
Preference number: 4 (lower is better)
Translates to: RKAEIRLCGLKVSISSSSPQKER*EGNVIK
Trigger: CTTAATGACATTCCCCTCCCACCTCTCCTTTTGAGG...GCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCTTCCAAATCGCACAATaGCAAAGCCAAACAGAGGAA +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSFQIAQ*QSQTEE
Trigger: TTCCTCTGTTTGGCTTTGCCATTGTGCGATTTGGAA...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp CGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCAGATCCGGACAACATTaGGATGCTCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RKAEIRLCGLKVSISSSSRSGQH*DAQKPP
Trigger: TGGAGGCTTTTGAGCATCCCAATGTTGTCCGGATCT...GCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR GCA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCGTTGCATATGTGGACTaGAGAAGAACTTCGGGAGCT +
Preference number: 4 (lower is better)
Translates to: RARKAEIRLCGLKVSISSVAYVD*RRTSGA
Trigger: AGCTCCCGAAGTTCTTCTGCAGTCCACATATGCAAC...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR GCA 90 bp TGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCCATGTCCACAGGTGTTaGATATGTGGACTGCAGAAG +
Preference number: 4 (lower is better)
Translates to: CRARKAEIRLCGLKVSISHVHRC*ICGLQK
Trigger: CTTCTGCAGTCCACATATGCAACACCTGTGGACATG...GGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR GCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCTCAGGTCAAAGATTTTaGCCAACTGGTCGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGSGQRF*PTGRLQ
Trigger: CTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGA...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCTCAGGTCAAAGATTTTaGCCAACTGGTCGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFSGQRF*PTGRLQ
Trigger: CTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGA...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CCA 90 bp ATGGCAGCCACTCCATTGCTCACTCCGGATTACCTTCATCCTTATGTAGATAAGTCAGCCGGACAACATTaGGATGCTCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: MAATPLLTPDYLHPYVDKSAGQH*DAQKPP
Trigger: TGGAGGCTTTTGAGCATCCCAATGTTGTCCGGCTGA...CTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CCA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCAGAGATTCGCTTGTGTaGGTTAAAAGTCAGCATTTC +
Preference number: 4 (lower is better)
Translates to: GGPSIASEIKAKIALSVSRDSLV*VKSQHF
Trigger: GAAATGCTGACTTTTAACCCACACAAGCGAATCTCT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCATCTCTGTAGAAAGATaGAGGAGGACCCTCCATAGC +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGISVER*RRTLHS
Trigger: GCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGAT...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAAAACCACGGGTGTAAGTaGCATCTGGTAGCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKNHGCK*HLVAVD
Trigger: ATCTACAGCTACCAGATGGCACTTACACCCGTGGTT...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR GCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAAGTTGCATATGTGGACTaGAGAAGAACTTCGGGAGCT +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKVAYVD*RRTSGA
Trigger: AGCTCCCGAAGTTCTTCTGCAGTCCACATATGCAAC...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR GCA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGACAGTCTTTAAGGTTTTaGAGGAAAGTCCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GSKVISVERWRRTLHSLRQSLRF*RKVPSS
Trigger: GGAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTG...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CCA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCTATGTCCTTAGGTCCTaGTCTACATGCTCAAACACC +
Preference number: 4 (lower is better)
Translates to: VISVERWRRTLHSLRDKGYVLRS*STCSNT
Trigger: GGTGTTTGAGCATGTAGACCAGGACCTAAGGACATA...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CCA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCTGTCCAGAAGGGAAATaGCAGCTTTTCTTCCTTCCA +
Preference number: 4 (lower is better)
Translates to: RARKAEIRLCGLKVSISSCPEGK*QLFFLP
Trigger: TGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACA...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR GCA 90 bp AGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCGATCTCGGTGAACGATaGAATTGGCATGAAGGAAAT +
Preference number: 4 (lower is better)
Translates to: RARKAEIRLCGLKVSISSDLGER*NWHEGN
Trigger: ATTTCCTTCATGCCAATTGCATCGTTCACCGAGATC...GCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR GCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAAGATAAAGGCAAAGATTaGCCTCTCAGTGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKDKGKD*PLSVQK
Trigger: CTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATC...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR GCA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGTCTTTAAGGTTTTaGAGGAAAGTCCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQQSLRF*RKVPSS
Trigger: GGAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTG...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CCA 90 bp CGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCAGAGATTCGCTTGTGTaGGTTAAAAGTCAGCATTTC +
Preference number: 4 (lower is better)
Translates to: RKAEIRLCGLKVSISSSSRDSLV*VKSQHF
Trigger: GAAATGCTGACTTTTAACCCACACAAGCGAATCTCT...GCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR GCA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAAGATCTCGGTGAACGATaGAATTGGCATGAAGGAAAT +
Preference number: 4 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKDLGER*NWHEGN
Trigger: ATTTCCTTCATGCCAATTGCATCGTTCACCGAGATC...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS CCA 90 bp AGAGGCGCGCGGAAACTGGGAGGGCGGGGCGAACGCCGGACGTTCTaGGCACGTGACCGCCACCCATGCGCTGAGGGGCGGACAGGAGGT +
Preference number: 5 (lower is better)
Translates to: RGARKLGGRGERRTF*ARDRHPCAEGRTGG
Trigger: ACCTCCTGTCCGCCCCTCAGCGCATGGGTGGCGGTCACGTGCCCAGAACGTCCGGCGTTCGCCCCGCCCTCCCAGTTTCCGCGCGCCTCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGGGTGATCCACCCGCGTaGGCCTCCCAACGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: GGGPSIASEIKAKIALSVGDPPA*ASQRAG
Trigger: CCCAGCACGTTGGGAGGCCAACGCGGGTGGATCACC...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCGGTGATCCACCCGCGTaGGCCTCCCAACGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: GGPSIASEIKAKIALSVSGDPPA*ASQRAG
Trigger: CCCAGCACGTTGGGAGGCCAACGCGGGTGGATCACC...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS GCA 90 bp CCCACGCCCAACCCTCCACCACCTTCTCACCGGACAACATTGGGATaGTCAAAAGCCTCCAGTCGCCTCAGTAAAGCCACCTCACGAACT +
Preference number: 5 (lower is better)
Translates to: PTPNPPPPSHRTTLG*SKASSRLSKATSRT
Trigger: AGTTCGTGAGGTGGCTTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCGGTGAGAAGGTGGTGGAGGGTTGGGCGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551706.1
CDS CCA 90 bp GGCAAGCCTGGTGGGGGTGCCTTGTCCAGATATGTCCTTAGGTCCTaGTCTACATGCTCAAACACCAGGGTTACCTTGATCTCCCGGTCA +
Preference number: 5 (lower is better)
Translates to: GKPGGGALSRYVLRS*STCSNTRVTLISRS
Trigger: TGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGCACCCCCACCAGGCTTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS-3UTR CAA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGGGGACTCTCACACTCTaGAGGGCCACAAAGTGGCCA +
Preference number: 5 (lower is better)
Translates to: GGGPSIASEIKAKIALSVGTLTL*RATKWP
Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCCC...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGCCACCTCCTCCTCCATaGGGGACTCTCACACTCTTG +
Preference number: 5 (lower is better)
Translates to: GGGPSIASEIKAKIALSVPPPPP*GTLTLL
Trigger: CAAGAGTGTGAGAGTCCCCAATGGAGGAGGAGGTGG...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS TCA 90 bp ATGTCCTTAGGTCCTGGTCTACATGCTCAAACACCAGGGTTACCTTaGTCTCCCGGTCAGTTCGGGATGTGGCACAGACGTCCATCAGCC +
Preference number: 5 (lower is better)
Translates to: MSLGPGLHAQTPGLP*SPGQFGMWHRRPSA
Trigger: GGCTGATGGACGTCTGTGCCACATCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS GCA 90 bp GGTGGGGGTGCCTTGTCCAGATATGTCCTTAGGTCCTGGTCTACATaGTCAAACACCAGGGTTACCTTGATCTCCCGGTCAGTTCGGGAT +
Preference number: 5 (lower is better)
Translates to: GGGALSRYVLRSWST*SNTRVTLISRSVRD
Trigger: ATCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGCACCCCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS-3UTR CAA 90 bp AAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCATGGCAGCCACTCCATaGCTCACTCCGGATTACCTT +
Preference number: 5 (lower is better)
Translates to: KVSISSSSCAPDSSISGTMAATP*LTPDYL
Trigger: AAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT...GGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CAA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCGGGACTCTCACACTCTaGAGGGCCACAAAGTGGCCA +
Preference number: 5 (lower is better)
Translates to: KDGGGPSIASEIKAKIALGTLTL*RATKWP
Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCCC...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCCCACCTCCTCCTCCATaGGGGACTCTCACACTCTTG +
Preference number: 5 (lower is better)
Translates to: KDGGGPSIASEIKAKIALPPPPP*GTLTLL
Trigger: CAAGAGTGTGAGAGTCCCCAATGGAGGAGGAGGTGG...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGATCAGCCGGACAACATaGGGATGCTCAAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: GGGPSIASEIKAKIALSVISRTT*GCSKAS
Trigger: GGAGGCTTTTGAGCATCCCAATGTTGTCCGGCTGAT...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCCCTGGTGGGGGTGCCTaGTCCAGATATGTCCTTAGG +
Preference number: 5 (lower is better)
Translates to: KDGGGPSIASEIKAKIALPGGGA*SRYVLR
Trigger: CCTAAGGACATATCTGGACAAGGCACCCCCACCAGG...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CAA 90 bp TGTGGGTTAAAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCCAGATCCGGACAACATaGGGATGCTCAAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: CGLKVSISSSSCAPDSSIQIRTT*GCSKAS
Trigger: GGAGGCTTTTGAGCATCCCAATGTTGTCCGGATCTG...GATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000553237.5
CDS-3UTR CAA 90 bp CAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCCAGGGGACTCTCACACTCTaGAGGGCCACAAAGTGGCCA +
Preference number: 5 (lower is better)
Translates to: QSSKGRDSLVWVKSQHFQGTLTL*RATKWP
Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCCC...CTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CAA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGATGGCGCATCAGATCCTaGATCGTTTCGGCTGGCAAG +
Preference number: 5 (lower is better)
Translates to: GSKVISVERWRRTLHSLRWRIRS*IVSAGK
Trigger: CTTGCCAGCCGAAACGATCAAGGATCTGATGCGCCA...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CAA 90 bp AAAGTCAGCATTTCCAGCAGCAGCTGTGCTCCCGACTCCTCCATCTCAGGTACCAAGGCAGAGATTCGCTaGTGTGGGTTAAAAGTCAGC +
Preference number: 5 (lower is better)
Translates to: KVSISSSSCAPDSSISGTKAEIR*CGLKVS
Trigger: GCTGACTTTTAACCCACACAAGCGAATCTCTGCCTT...GGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CAA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCATCAGCCGGACAACATaGGGATGCTCAAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: KDGGGPSIASEIKAKIALISRTT*GCSKAS
Trigger: GGAGGCTTTTGAGCATCCCAATGTTGTCCGGCTGAT...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAACACCAGGGTTACCTaGATCTCCCGGTCAGTTCGG +
Preference number: 5 (lower is better)
Translates to: VISVERWRRTLHSLRDKGNTRVT*ISRSVR
Trigger: CCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTT...GCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257904.11
CDS-3UTR CAA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCATCAGGTCAAAGATTTaGCCCAACTGGTCGGCTTCA +
Preference number: 5 (lower is better)
Translates to: GGPSIASEIKAKIALSVSIRSKI*PNWSAS
Trigger: TGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGAT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGATCAGGTCAAAGATTTaGCCCAACTGGTCGGCTTCA +
Preference number: 5 (lower is better)
Translates to: GGGPSIASEIKAKIALSVIRSKI*PNWSAS
Trigger: TGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGAT...CACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCTCAGTGTCCAAGGCAGAGATTCGCTaGTGTGGGTTAAAAGTCAGC +
Preference number: 5 (lower is better)
Translates to: GGPSIASEIKAKIALSVSKAEIR*CGLKVS
Trigger: GCTGACTTTTAACCCACACAAGCGAATCTCTGCCTT...GGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp AAAGATGGAGGAGGACCCTCCATAGCCTCAGAGATAAAGGCAAAGATTGCCCTCATGGCAGCCACTCCATaGCTCACTCCGGATTACCTT +
Preference number: 5 (lower is better)
Translates to: KDGGGPSIASEIKAKIALMAATP*LTPDYL
Trigger: AAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT...GAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS TCA 90 bp CGCTTTTTCCTTTGGGACAATCGCGCCCCGCACAAAGATCACACATaGCACATGCCTTGCATCGAAGATCCTACACCTCAGTCCCTAAAA +
Preference number: 5 (lower is better)
Translates to: RFFLWDNRAPHKDHT*HMPCIEDPTPQSLK
Trigger: TTTTAGGGACTGAGGTGTAGGATCTTCGATGCAAGGCATGTGTCATGTGTGATCTTTGTGCGGGGCGCGATTGTCCCAAAGGAAAAAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547853.1
CDS CCA 90 bp ATTGCTACGGGCAATCACTCTCCTACTCCCAACCAGAACCCATTTTaGTACCATCTTTCTACTGACCACGGGTGTAAGTGCCATCTGGTA +
Preference number: 5 (lower is better)
Translates to: IATGNHSPTPNQNPF*YHLSTDHGCKCHLV
Trigger: TACCAGATGGCACTTACACCCGTGGTCAGTAGAAAGATGGTACCAAAATGGGTTCTGGTTGGGAGTAGGAGAGTGATTGCCCGTAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551706.1
CDS-3UTR CAA 90 bp ATGGCAGCCACTCCATTGCTCACTCCGGATTACCTTCATCCTTATGTAGATAAGTCGACGAAACATCTCTaGATCTCCCGGTCAGTTCGG +
Preference number: 5 (lower is better)
Translates to: MAATPLLTPDYLHPYVDKSTKHL*ISRSVR
Trigger: CCGAACTGACCGGGAGATCAAGAGATGTTTCGTCGA...CTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS-3UTR CAA 90 bp CTGCAGAGCTCGAAAGGCAGAGATTCGCTTGTGTGGGTTAAAAGTCAGCATTTCATCAGGTCAAAGATTTaGCCCAACTGGTCGGCTTCA +
Preference number: 5 (lower is better)
Translates to: LQSSKGRDSLVWVKSQHFIRSKI*PNWSAS
Trigger: TGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGAT...GAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000312990.10
ENST00000553237.5
CDS-3UTR CAA 90 bp GGCAGCAAAGTAATCTCTGTAGAAAGATGGAGGAGGACCCTCCATAGCCTCAGACCAGTCTTTAAGGTTTaGCAGGAAAGTCCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: GSKVISVERWRRTLHSLRPVFKV*QESPFF
Trigger: GAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTGG...TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAAAAGGCAGAGATTCGCTaGTGTGGGTTAAAAGTCAGC +
Preference number: 5 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKKAEIR*CGLKVS
Trigger: GCTGACTTTTAACCCACACAAGCGAATCTCTGCCTT...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS-3UTR CAA 90 bp GGGAACATACCCCTTAGTGTAGAGAAATGGGAAGGAGAAGGAGAAGCCTCAAAACCAGTCTTTAAGGTTTaGCAGGAAAGTCCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: GNIPLSVEKWEGEGEASKPVFKV*QESPFF
Trigger: GAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTGG...TTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000257904.11
ENST00000312990.10
CDS CCA 72 bp CGGAAACTGGGAGGGCGGGGCGAACGCCGGACGTTCTaGGCACGTGACCGCCACCCATGCGCTGAGGGGCGG +
Preference number: 6 (lower is better)
Translates to: RKLGGRGERRTF*ARDRHPCAEGR
Trigger: CCGCCCCTCAGCGCATGGGTGGCGGTCACGTGCCCAGAACGTCCGGCGTTCGCCCCGCCCTCCCAGTTTCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312990.10
CDS CCA 72 bp CGCCCAACCCTCCACCACCTTCTCACCGGACAACATTaGGATGCTCAAAAGCCTCCAGTCGCCTCAGTAAAG +
Preference number: 6 (lower is better)
Translates to: RPTLHHLLTGQH*DAQKPPVASVK
Trigger: CTTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCGGTGAGAAGGTGGTGGAGGGTTGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551706.1
CDS TCA 72 bp GGTCCTGGTCTACATGCTCAAACACCAGGGTTACCTTaGTCTCCCGGTCAGTTCGGGATGTGGCACAGACGT +
Preference number: 6 (lower is better)
Translates to: GPGLHAQTPGLP*SPGQFGMWHRR
Trigger: ACGTCTGTGCCACATCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS GCA 72 bp AACCCTCCACCACCTTCTCACCGGACAACATTGGGATaGTCAAAAGCCTCCAGTCGCCTCAGTAAAGCCACC +
Preference number: 6 (lower is better)
Translates to: NPPPPSHRTTLG*SKASSRLSKAT
Trigger: GGTGGCTTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCGGTGAGAAGGTGGTGGAGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551706.1
CDS CAA 72 bp AGGTCCTGGTCTACATGCTCAAACACCAGGGTTACCTaGATCTCCCGGTCAGTTCGGGATGTGGCACAGACG +
Preference number: 6 (lower is better)
Translates to: RSWSTCSNTRVT*ISRSVRDVAQT
Trigger: CGTCTGTGCCACATCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS CAA 72 bp ACGCCCAACCCTCCACCACCTTCTCACCGGACAACATaGGGATGCTCAAAAGCCTCCAGTCGCCTCAGTAAA +
Preference number: 6 (lower is better)
Translates to: TPNPPPPSHRTT*GCSKASSRLSK
Trigger: TTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCGGTGAGAAGGTGGTGGAGGGTTGGGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551706.1
CDS CAA 90 bp TATGTCCTTAGGTCCTGGTCTACATGCTCAAACACCAGGGTTACCTaGATCTCCCGGTCAGTTCGGGATGTGGCACAGACGTCCATCAGC +
Preference number: 6 (lower is better)
Translates to: YVLRSWSTCSNTRVT*ISRSVRDVAQTSIS
Trigger: GCTGATGGACGTCTGTGCCACATCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS CAA 90 bp ATCAGATCCTTGATCGTTTCGGCTGGCAAGCCTGGTGGGGGTGCCTaGTCCAGATATGTCCTTAGGTCCTGGTCTACATGCTCAAACACC +
Preference number: 6 (lower is better)
Translates to: IRSLIVSAGKPGGGA*SRYVLRSWSTCSNT
Trigger: GGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGCACCCCCACCAGGCTTGCCAGCCGAAACGATCAAGGATCTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
CDS CCA 72 bp GGTGGGGGTGCCTTGTCCAGATATGTCCTTAGGTCCTaGTCTACATGCTCAAACACCAGGGTTACCTTGATC +
Preference number: 6 (lower is better)
Translates to: GGGALSRYVLRS*STCSNTRVTLI
Trigger: GATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGCACCCCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS GCA 72 bp GCCTTGTCCAGATATGTCCTTAGGTCCTGGTCTACATaGTCAAACACCAGGGTTACCTTGATCTCCCGGTCA +
Preference number: 6 (lower is better)
Translates to: ALSRYVLRSWST*SNTRVTLISRS
Trigger: TGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000257904.11
ENST00000546489.5
ENST00000547281.5
ENST00000550419.5
ENST00000551706.1
ENST00000551800.5
ENST00000552254.5
ENST00000552388.1
ENST00000552862.1
CDS CCA 72 bp GACTCCTATCACCAAAAGTCGCTTACAGAGTTAGGATaGTATGAGCCTGCAGCAACAAAGGGACTCCCAAAA +
Preference number: 6 (lower is better)
Translates to: DSYHQKSLTELG*YEPAATKGLPK
Trigger: TTTTGGGAGTCCCTTTGTTGCTGCAGGCTCATACCATCCTAACTCTGTAAGCGACTTTTGGTGATAGGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552254.5