RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDH19 (Homo sapiens)

Ensembl gene IDs: ENSG00000071991

Ensembl transcript IDs: ENST00000262150.7, ENST00000454642.3, ENST00000540086.5, ENST00000579658.5, ENST00000580157.2

Found 246 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTA +
Preference number: 1 (lower is better)
Translates to: WHCRGQLAKTACIGS*SQRLWFSESCVPAL
Trigger: TAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR GCA 90 bp ATGAATTTCCTGAATATGGCACTGTCGGGGCCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTC +
Preference number: 1 (lower is better)
Translates to: MNFLNMALSGPTCKD*LYRLLISALVVFRV
Trigger: GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR CCA 90 bp TACTGGCAGGTCTGTGTGCTCCCACTGTCACCACAGTCACAGACATaGATGGTAAGGGTGTTTGTACTTGTAAGTGACGGGATTCCATTG +
Preference number: 1 (lower is better)
Translates to: YWQVCVLPLSPQSQT*MVRVFVLVSDGIPL
Trigger: CAATGGAATCCCGTCACTTACAAGTACAAACACCCTTACCATCCATGTCTGTGACTGTGGTGACAGTGGGAGCACACAGACCTGCCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR GCA 90 bp TTTTCCAGAATGAATTTCCTGAATATGGCACTGTCGGGGCCAACTTaGAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTT +
Preference number: 1 (lower is better)
Translates to: FSRMNFLNMALSGPT*KDCLYRLLISALVV
Trigger: AACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCATTCTGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR GCA 90 bp TTGAAAGTAACTAATTCAAACAAAGATCTGTTAGGCTCAAGCACATaGACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTA +
Preference number: 1 (lower is better)
Translates to: LKVTNSNKDLLGSST*TEGTTSSSLVLIFL
Trigger: TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAGATCTTTGTTTGAATTAGTTACTTTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp AAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGACTGGCAGGTCTGTGTaGTCCCACTGTCACCACAGT +
Preference number: 2 (lower is better)
Translates to: KDCLYRLLISALVVFRVLTGRSV*SHCHHS
Trigger: ACTGTGGTGACAGTGGGAGCACACAGACCTGCCAGT...CAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR-3UTR CCA 90 bp GTAGGTCTGGAGGGAATCAAAAGGAGGGGCACACGGATCAGTATTAGCTTCTTCGAAAGCACAAGCTCCTaGTACTGGCAGGTCTGTGTG +
Preference number: 2 (lower is better)
Translates to: VGLEGIKRRGTRISISFFESTSS*YWQVCV
Trigger: CACACAGACCTGCCAGTACCAGGAGCTTGTGCTTTC...GAAGAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR CAA 90 bp TGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCA +
Preference number: 2 (lower is better)
Translates to: CLYRLLISALVVFRV*RSRIMVLLLSSAIS
Trigger: TGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR-3UTR TCA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTT +
Preference number: 2 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYIACIGS*SQRLWF
Trigger: AAACCACAAGCGCTGAGATCAGGAGCCTATACAGGC...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR-3UTR GCA 90 bp GTAGGTCTGGAGGGAATCAAAAGGAGGGGCACACGGATCAGTATTAGCTTCTTCTGGTTTTCCGAGTCTTaGGTTCCCGCATTATGGTAC +
Preference number: 2 (lower is better)
Translates to: VGLEGIKRRGTRISISFFWFSES*VPALWY
Trigger: GTACCATAATGCGGGAACGCAAGACTCGGAAAACCA...GAAGAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR-3UTR CCA 90 bp AATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCCCACAGTCACAGACATaGATGGTAAGGGTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: NMALSGPTCKDCLYRLLIPQSQT*MVRVFV
Trigger: TACAAACACCCTTACCATCCATGTCTGTGACTGTGG...GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR-3UTR TCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTATTGATGCCTGTGAGCTaGTTGTTTACATTTCTCCCC +
Preference number: 2 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLMPVS*LFTFLP
Trigger: GGGGAGAAATGTAAACAATCAGCTCACAGGCATCAA...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAGAGCAATCGTGTCTGTaGTTTCCCTGTGTATCCTAT +
Preference number: 2 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLEQSCL*FPCVSY
Trigger: ATAGGATACACAGGGAAAGCACAGACACGATTGCTC...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCCCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATC +
Preference number: 2 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYIPTCKD*LYRLLI
Trigger: GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGCACATCTCTGTTCAATaGCAGCATGTAGGTAGCTTA +
Preference number: 2 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVHISVQ*QHVGSL
Trigger: TAAGCTACCTACATGCTGTCATTGAACAGAGATGTG...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp GAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGTCGGGGCCAACTTGCAAGTTTGTACTTGTAAGTaGCGGGATTCCATTGTCGGC +
Preference number: 2 (lower is better)
Translates to: ELFQNEFPEYGTVGANLQVCTCK*RDSIVG
Trigger: GCCGACAATGGAATCCCGTCACTTACAAGTACAAAC...TTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR-3UTR TCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTACATTGCGTTAAGGATTaGCTACATCTTATGTCCTCT +
Preference number: 2 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLHCVKD*LHLMSS
Trigger: AGAGGACATAAGATGTAGTCAATCCTTAACGCAATG...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGCTTTTATTTTCAATGTaGCGTGAGGCTGTTGAGATC +
Preference number: 2 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVLLFSM*REAVEI
Trigger: GATCTCAACAGCCTCACGGCACATTGAAAATAAAAG...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTCATGTTTTATCCCATaGATGGTAAGTCAGTTCAGT +
Preference number: 2 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVSCFIP*MVSQFS
Trigger: ACTGAACTGACTTACCATTCATGGGATAAAACATGA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGCCATGTGAAATAGGTTaGTTGGACGTCATTTTACAA +
Preference number: 2 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVPCEIG*LDVILQ
Trigger: TTGTAAAATGACGTCCAATCAACCTATTTCACATGG...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGAGGCACTATTGGTGCTaGTGGTTTTACATATCTTAT +
Preference number: 2 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVRHYWC*WFYISY
Trigger: ATAAGATATGTAAAACCAGCAGCACCAATAGTGCCT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTGTCAGGCACTATTGGTaGTGCTGGTTTTACATATCT +
Preference number: 2 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSVRHYW*CWFYIS
Trigger: AGATATGTAAAACCAGCAGCACCAATAGTGCCTGAC...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCATATATGGCCAGTTTaGTTCAGCTTAGTCTCACAT +
Preference number: 2 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSHIWPV*FSLVSH
Trigger: ATGTGAGACTAAGCTGAACCAAACTGGCCATATATG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCTGTGGGTATTAATGTaGAGCTGTGCTATTTTCATA +
Preference number: 2 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSLWVLM*SCAIFI
Trigger: TATGAAAATAGCACAGCTTCACATTAATACCCACAG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCGTCATTTTACAAAGTaGGATCTGGAAAGATTAAGC +
Preference number: 2 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSRHFTK*DLERLS
Trigger: GCTTAATCTTTCCAGATCTCACTTTGTAAAATGACG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR TCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTAGACTACCAAAGAGATaGGCAATCGTGTCTGTGCTT +
Preference number: 2 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIRLPKR*AIVSVL
Trigger: AAGCACAGACACGATTGCTCATCTCTTTGGTAGTCT...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR GCA 90 bp TCAGTATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGACTACTCCTCAGCTCTaGTATATCAAAGGCCTCTGT +
Preference number: 2 (lower is better)
Translates to: SVLASSSFSRMNFLNMALTTPQL*YIKGLC
Trigger: ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGT...CAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAATACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR-3UTR CCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAGTCATATGCCAGAGCTaGTTTTATAAGGCTTTTATT +
Preference number: 2 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLVICQS*FYKAFI
Trigger: AATAAAAGCCTTATAAAACCAGCTCTGGCATATGAC...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR TCA 72 bp CGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTT +
Preference number: 3 (lower is better)
Translates to: RGQLAKTACIGS*SQRLWFSESCV
Trigger: AACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR GCA 72 bp CTGAATATGGCACTGTCGGGGCCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTT +
Preference number: 3 (lower is better)
Translates to: LNMALSGPTCKD*LYRLLISALVV
Trigger: AACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR GCA 72 bp ATGAATTTCCTGAATATGGCACTGTCGGGGCCAACTTaGAAAGACTGCCTGTATAGGCTCCTGATCTCAGCG +
Preference number: 3 (lower is better)
Translates to: MNFLNMALSGPT*KDCLYRLLISA
Trigger: CGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR CCA 72 bp CGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATaGTACTACTCCTCAGCTCTGCTATATCAAAGGCCT +
Preference number: 3 (lower is better)
Translates to: RLWFSESCVPAL*YYSSALLYQRP
Trigger: AGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR-3UTR CAA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTA +
Preference number: 3 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYIVVFRV*RSRIMV
Trigger: TACCATAATGCGGGAACGCAAGACTCGGAAAACCAC...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
3UTR-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTATTAAGAGCTGTGTTCTaGCAACACCCATGTGATGCA +
Preference number: 3 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLRAVF*QHPCDA
Trigger: TGCATCACATGGGTGTTGCAAGAACACAGCTCTTAA...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTACCCAACAGCTTAGCATaGATTTCCTTCTTAAGGCTA +
Preference number: 3 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLPNSLA*ISFLRL
Trigger: TAGCCTTAAGAAGGAAATCAATGCTAAGCTGTTGGG...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAACATATATGGCCAGTTaGGTTCAGCTTAGTCTCACA +
Preference number: 3 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLTYMAS*VQLSLT
Trigger: TGTGAGACTAAGCTGAACCAAACTGGCCATATATGT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGGGAAGGTGAGGAAGTaGACTTTTATTTTCAATGTG +
Preference number: 3 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVGKVRK*TFIFNV
Trigger: CACATTGAAAATAAAAGTCAACTTCCTCACCTTCCC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR-3UTR CAA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAAGTTCAACAAGTTTCTaGGAAGCTTTAGGATCCAGG +
Preference number: 3 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTSSTSF*EALGSR
Trigger: CCTGGATCCTAAAGCTTCCAAGAAACTTGTTGAACT...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
3UTR TCA 72 bp TGGTTAAAAGGAACATATTTTAGACTACCAAAGAGATaGGCAATCGTGTCTGTGCTTTCCCTGTGTATCCTA +
Preference number: 3 (lower is better)
Translates to: WLKGTYFRLPKR*AIVSVLSLCIL
Trigger: TAGGATACACAGGGAAAGCACAGACACGATTGCTCATCTCTTTGGTAGTCTAAAATATGTTCCTTTTAACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
3UTR TCA 72 bp CAATCGTGTCTGTGCTTTCCCTGTGTATCCTATGATTaGCAATCTTATAATCAACTCAACCAGAATCTATTT +
Preference number: 3 (lower is better)
Translates to: QSCLCFPCVSYD*QSYNQLNQNLF
Trigger: AAATAGATTCTGGTTGAGTTGATTATAAGATTGTCAATCATAGGATACACAGGGAAAGCACAGACACGATTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCGACAACGCTCCTGGCTaGCCAATCATGTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: LYRLLISALVVFRVLRSRDNAPG*PIMSLA
Trigger: AGCCAAGGACATGATTGGTCAGCCAGGAGCGTTGTC...GCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTCACCACGCCTACAAATaGTCCCTGTGGGGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: DCLYRLLISALVVFRVLRHHAYK*SLWGFF
Trigger: GAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTG...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTT +
Preference number: 4 (lower is better)
Translates to: DCLYRLLISALVVFRVLRACIGS*SQRLWF
Trigger: AAACCACAAGCGCTGAGATCAGGAGCCTATACAGGC...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTGAAAGCACAAGCTCCTaGTACTGGCAGGTCTGTGTG +
Preference number: 4 (lower is better)
Translates to: DCLYRLLISALVVFRVLRESTSS*YWQVCV
Trigger: CACACAGACCTGCCAGTACCAGGAGCTTGTGCTTTC...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
3UTR CAA 72 bp AGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTACTACTCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: RLLISALVVFRV*RSRIMVLLLSS
Trigger: AGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGACAACGCTCCTGGCTaGCCAATCATGTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVDNAPG*PIMSLA
Trigger: AGCCAAGGACATGATTGGTCAGCCAGGAGCGTTGTC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCCAGTGTGGTACTTCATaGGCTGCTCAGGAACATGAT +
Preference number: 4 (lower is better)
Translates to: LYRLLISALVVFRVLRSRQCGTS*AAQEHD
Trigger: ATCATGTTCCTGAGCAGCTCATGAAGTACCACACTG...GCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCCTGTCGGGGCCAACTTaGAAAGACTGCCTGTATAGG +
Preference number: 4 (lower is better)
Translates to: CKDCLYRLLISALVVFRVLSGPT*KDCLYR
Trigger: CCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAG...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCTATTGTCTGGGTCTGTaGCAGACACCACGCCTACAA +
Preference number: 4 (lower is better)
Translates to: CLYRLLISALVVFRVLRSYCLGL*QTPRLQ
Trigger: TTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATA...GGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCTGCGTTCCCGCATTATaGTACTACTCCTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: CLYRLLISALVVFRVLRSCVPAL*YYSSAL
Trigger: CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCA...GGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCAGTGTGGTACTTCATaGGCTGCTCAGGAACATGAT +
Preference number: 4 (lower is better)
Translates to: CLYRLLISALVVFRVLRSQCGTS*AAQEHD
Trigger: ATCATGTTCCTGAGCAGCTCATGAAGTACCACACTG...GGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp AAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCACCACGCCTACAAATaGTCCCTGTGGGGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: KDCLYRLLISALVVFRVLHHAYK*SLWGFF
Trigger: GAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTG...CAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTT +
Preference number: 4 (lower is better)
Translates to: LWFSESCVPALWYYSSALACIGS*SQRLWF
Trigger: AAACCACAAGCGCTGAGATCAGGAGCCTATACAGGC...CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTACTGTCGGGGCCAACTTaGAAAGACTGCCTGTATAGG +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLSGPT*KDCLYR
Trigger: CCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAG...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp AAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCTGTCGGGGCCAACTTaGAAAGACTGCCTGTATAGG +
Preference number: 4 (lower is better)
Translates to: KDCLYRLLISALVVFRVLLSGPT*KDCLYR
Trigger: CCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAG...CAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp CTGCTGATTCTAAGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGCTCGATGTGCCCCATTaGCCAGAGTTACAGACGCTT +
Preference number: 4 (lower is better)
Translates to: LLILRSSGIQLMTLFPQKLDVPH*PELQTL
Trigger: AAGCGTCTGTAACTCTGGGCAATGGGGCACATCGAG...CTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCTTAGAATCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR GCA 90 bp AGCGTAGGTCTGGAGGGAATCAAAAGGAGGGGCACACGGATCAGTATTAGCTTCAGCAAACTCTCGATGTaGCCCATTGCCCAGAGTTAC +
Preference number: 4 (lower is better)
Translates to: SVGLEGIKRRGTRISISFSKLSM*PIAQSY
Trigger: GTAACTCTGGGCAATGGGGCACATCGAGAGTTTGCT...GAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CCA 90 bp CTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCTTCTGGAGACATCTCTaGTACAATGGCCTCATAAGG +
Preference number: 4 (lower is better)
Translates to: LYRLLISALVVFRVLRSRFWRHL*YNGLIR
Trigger: CCTTATGAGGCCATTGTACCAGAGATGTCTCCAGAA...GCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTTCCAGACAACGCTCCTaGCTGACCAATCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: LSACGFPSLAFPHYGTTPSRQRS*LTNHVL
Trigger: AAGGACATGATTGGTCAGCCAGGAGCGTTGTCTGGA...AGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGAAAGCACAAGCTCCTaGTACTGGCAGGTCTGTGTG +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVESTSS*YWQVCV
Trigger: CACACAGACCTGCCAGTACCAGGAGCTTGTGCTTTC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTGCGTTCCCGCATTATaGTACTACTCCTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: CKDCLYRLLISALVVFRVCVPAL*YYSSAL
Trigger: CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCA...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATACGCTTCACTCTCAAATaGGATCGCACTGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: VFRVLRSRIMVLLLSSAIRFTLK*DRTGCL
Trigger: CAAGCAGCCAGTGCGATCTCATTTGAGAGTGAAGCG...TATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp AATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCAGAAGTCCCAGTGGGTaGAGATTCAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: NMALSGPTCKDCLYRLLIRSPSG*RFRDSQ
Trigger: TTGACTGTCTCTGAATCTGCACCCACTGGGACTTCT...GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGTGGAAGCCTCAGTGTaGTACTTCATGAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVVEASV*YFMSCS
Trigger: TGAGCAGCTCATGAAGTACCACACTGAGGCTTCCAC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp CTGCTGATTCTAAGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGTATTGTCTGGGTCTGTaGCAGACACCACGCCTACAA +
Preference number: 4 (lower is better)
Translates to: LLILRSSGIQLMTLFPQKYCLGL*QTPRLQ
Trigger: TTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATA...CTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCTTAGAATCAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTGCGTTCCCGCATTATaGTACTACTCCTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVCVPAL*YYSSAL
Trigger: CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATCTCGCTTCACTCTCAAATaGGATCGCACTGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: SRIMVLLLSSAISKASVSRFTLK*DRTGCL
Trigger: CAAGCAGCCAGTGCGATCTCATTTGAGAGTGAAGCG...AGATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGAGACAACGCTCCTGGCTaGCCAATCATGTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRDNAPG*PIMSLA
Trigger: AGCCAAGGACATGATTGGTCAGCCAGGAGCGTTGTC...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp CTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCGATTTCACGATCCAGTaGGTTACTTGTAGTGATTGT +
Preference number: 4 (lower is better)
Translates to: LYRLLISALVVFRVLRSRDFTIQ*VTCSDC
Trigger: ACAATCACTACAAGTAACTCACTGGATCGTGAAATC...GCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGGTTGTACCAAGCACTaGTTTCACGATCCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVGCTKH*FHDPVS
Trigger: ACTCACTGGATCGTGAAATCAGTGCTTGGTACAACC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp ACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGGTTGTACCAAGCACTaGTTTCACGATCCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: TCKDCLYRLLISALVVFRGCTKH*FHDPVS
Trigger: ACTCACTGGATCGTGAAATCAGTGCTTGGTACAACC...TCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp AAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGGTTTGTACTTGTAAGTaGCGGGATTCCATTGTCGGC +
Preference number: 4 (lower is better)
Translates to: KDCLYRLLISALVVFRVLVCTCK*RDSIVG
Trigger: GCCGACAATGGAATCCCGTCACTTACAAGTACAAAC...CAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTGCCTGTATAGGCTCCTaGTCTCAGCGCTTGTGGTTT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSACIGS*SQRLWF
Trigger: AAACCACAAGCGCTGAGATCAGGAGCCTATACAGGC...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp GCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTAGAAGTCCCAGTGGGTaGAGATTCAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: AFPHYGTTPQLCYIKGLCRSPSG*RFRDSQ
Trigger: TTGACTGTCTCTGAATCTGCACCCACTGGGACTTCT...ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp AGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGACTACTCCTCAGCTCTaGTATATCAAAGGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: SACGFPSLAFPHYGTTPQTTPQL*YIKGLC
Trigger: ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGT...CTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp CTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGGTTTTCCGAGTCTTaGGTTCCCGCATTATGGTAC +
Preference number: 4 (lower is better)
Translates to: LAFPHYGTTPQLCYIKGLWFSES*VPALWY
Trigger: GTACCATAATGCGGGAACGCAAGACTCGGAAAACCA...GAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp ACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGACCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: TCKDCLYRLLISALVVFRPTCKD*LYRLLI
Trigger: GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG...TCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTATTAGGCTCAAGCACATaGACTGAGGGAACAACTAGC +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLGSST*TEGTTS
Trigger: GCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAA...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp CTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCACATCTCTGGTACAATaGCCTCATAAGGTTCATCTA +
Preference number: 4 (lower is better)
Translates to: LYRLLISALVVFRVLRSRTSLVQ*PHKVHL
Trigger: TAGATGAACCTTATGAGGCCATTGTACCAGAGATGT...GCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCTCCAGACAACGCTCCTaGCTGACCAATCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYISRQRS*LTNHVL
Trigger: AAGGACATGATTGGTCAGCCAGGAGCGTTGTCTGGA...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGTGGAAGCCTCAGTGTaGTACTTCATGAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKVEASV*YFMSCS
Trigger: TGAGCAGCTCATGAAGTACCACACTGAGGCTTCCAC...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAAGATTTCCTATTGTCTaGGTCTGTGGCAGACACCAC +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLRFPIV*VCGRHH
Trigger: GTGGTGTCTGCCACAGACCCAGACAATAGGAAATCT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCAACTTGCACATACAGTaGGATCGAAGAGATCTGTTC +
Preference number: 4 (lower is better)
Translates to: CLYRLLISALVVFRVLRSNLHIQ*DRRDLF
Trigger: GAACAGATCTCTTCGATCCCACTGTATGTGCAAGTT...GGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCCCACAGTCACAGACATaGATGGTAAGGGTGTTTGTA +
Preference number: 4 (lower is better)
Translates to: CKDCLYRLLISALVVFRVPQSQT*MVRVFV
Trigger: TACAAACACCCTTACCATCCATGTCTGTGACTGTGG...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCAAAGCCAGGGTCACTaGAAGCAGCAGTGGTCTTTC +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSQSQGH*KQQWSF
Trigger: GAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTAAGTTCTGTGAAAACTaGACAGCAAACTTCGTGTTG +
Preference number: 4 (lower is better)
Translates to: DCLYRLLISALVVFRVLRKFCEN*TANFVL
Trigger: CAACACGAAGTTTGCTGTTCAGTTTTCACAGAACTT...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp CTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCATCGCACTGGCTGCTTaGCTTTCTTTGTTTGAGAGT +
Preference number: 4 (lower is better)
Translates to: LAFPHYGTTPQLCYIKGLIALAA*LSLFES
Trigger: ACTCTCAAACAAAGAAAGTCAAGCAGCCAGTGCGAT...GAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp CTGCTGATTCTAAGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGATCGCACTGGCTGCTTaGCTTTCTTTGTTTGAGAGT +
Preference number: 4 (lower is better)
Translates to: LLILRSSGIQLMTLFPQKIALAA*LSLFES
Trigger: ACTCTCAAACAAAGAAAGTCAAGCAGCCAGTGCGAT...CTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCTTAGAATCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGACGCTTCACTCTCAAATaGGATCGCACTGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRRFTLK*DRTGCL
Trigger: CAAGCAGCCAGTGCGATCTCATTTGAGAGTGAAGCG...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp ATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGTCGGGGACAACGCTCCTGGCTaGCCAATCATGTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: ISFFELFQNEFPEYGTVGDNAPG*PIMSLA
Trigger: AGCCAAGGACATGATTGGTCAGCCAGGAGCGTTGTC...CCCGACAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGACACCACGCCTACAAATaGTCCCTGTGGGGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRHHAYK*SLWGFF
Trigger: GAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTG...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTTGATGCCTGTGAGCTaGTTGTTTACATTTCTCCCC +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVLMPVS*LFTFLP
Trigger: GGGGAGAAATGTAAACAATCAGCTCACAGGCATCAA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAACTGGCAGGTCTGTGTaGTCCCACTGTCACCACAGT +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLTGRSV*SHCHHS
Trigger: ACTGTGGTGACAGTGGGAGCACACAGACCTGCCAGT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAACTACTCCTCAGCTCTaGTATATCAAAGGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLTTPQL*YIKGLC
Trigger: ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAACCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKPTCKD*LYRLLI
Trigger: GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCCAAATGAGATCGCACTaGCTGCTTGACTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: SALVVFRVLRSRIMVLLLQMRSH*LLDFLC
Trigger: ACAAAGAAAGTCAAGCAGCCAGTGCGATCTCATTTG...GAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTCCAGACAACGCTCCTaGCTGACCAATCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSSRQRS*LTNHVL
Trigger: AAGGACATGATTGGTCAGCCAGGAGCGTTGTCTGGA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATGTGGAAGCCTCAGTGTaGTACTTCATGAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: VPALWYYSSALLYQRPLYVEASV*YFMSCS
Trigger: TGAGCAGCTCATGAAGTACCACACTGAGGCTTCCAC...ATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAGATTTCCTATTGTCTaGGTCTGTGGCAGACACCAC +
Preference number: 4 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYIRFPIV*VCGRHH
Trigger: GTGGTGTCTGCCACAGACCCAGACAATAGGAAATCT...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTACGCTTCACTCTCAAATaGGATCGCACTGGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLRFTLK*DRTGCL
Trigger: CAAGCAGCCAGTGCGATCTCATTTGAGAGTGAAGCG...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAAGCATTATTACCACTTaGGGGATCGTCAGCATCACT +
Preference number: 4 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKSIITT*GIVSIT
Trigger: AGTGATGCTGACGATCCCTCAAGTGGTAATAATGCT...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp AGAATGAATTTCCTGAATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGAGCATTATTACCACTTaGGGGATCGTCAGCATCACT +
Preference number: 4 (lower is better)
Translates to: RMNFLNMALSGPTCKDCLSIITT*GIVSIT
Trigger: AGTGATGCTGACGATCCCTCAAGTGGTAATAATGCT...CAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp AGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGTGTCCTTGGCTTGAATaGTTACCCAATACTCATCTT +
Preference number: 4 (lower is better)
Translates to: SACGFPSLAFPHYGTTPQCPWLE*LPNTHL
Trigger: AAGATGAGTATTGGGTAATCATTCAAGCCAAGGACA...CTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCATCATGTCCTTGGCTTaGATGATTACCCAATACTCA +
Preference number: 4 (lower is better)
Translates to: CKDCLYRLLISALVVFRVIMSLA*MITQYS
Trigger: TGAGTATTGGGTAATCATTCAAGCCAAGGACATGAT...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCAGTGTGGTACTTCATaGGCTGCTCAGGAACATGAT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSQCGTS*AAQEHD
Trigger: ATCATGTTCCTGAGCAGCTCATGAAGTACCACACTG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CCTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACCAGTGTGGTACTTCATaGGCTGCTCAGGAACATGAT +
Preference number: 4 (lower is better)
Translates to: PSFSQSIHTHTHTHTHTHQCGTS*AAQEHD
Trigger: ATCATGTTCCTGAGCAGCTCATGAAGTACCACACTG...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCGATTTCACGATCCAGTaGGTTACTTGTAGTGATTGT +
Preference number: 4 (lower is better)
Translates to: CKDCLYRLLISALVVFRVDFTIQ*VTCSDC
Trigger: ACAATCACTACAAGTAACTCACTGGATCGTGAAATC...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATGGTTGTACCAAGCACTaGTTTCACGATCCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: VPALWYYSSALLYQRPLYGCTKH*FHDPVS
Trigger: ACTCACTGGATCGTGAAATCAGTGCTTGGTACAACC...ATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp AGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGCGTAGGTCTGGAAAGACAGGTTCTTCTTaGAGGTTAAAACCAGTTCTT +
Preference number: 4 (lower is better)
Translates to: RSSGIQLMTLFPQKRRSGKTGSS*RLKPVL
Trigger: AAGAACTGGTTTTAACCTTCAAGAAGAACCTGTCTT...TCCAGACCTACGCTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR GCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTAGAAGTCCCAGTGGGTaGAGATTCAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSRSPSG*RFRDSQ
Trigger: TTGACTGTCTCTGAATCTGCACCCACTGGGACTTCT...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp GTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATAACTACTCCTCAGCTCTaGTATATCAAAGGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: VFRVLRSRIMVLLLSSAITTPQL*YIKGLC
Trigger: ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGT...TATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp TCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATCTTGGTTTTCCGAGTCTTaGGTTCCCGCATTATGGTAC +
Preference number: 4 (lower is better)
Translates to: SRIMVLLLSSAISKASVSWFSES*VPALWY
Trigger: GTACCATAATGCGGGAACGCAAGACTCGGAAAACCA...AGATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTCCAACTTGCAAAGACTaGCTGTATAGGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSPTCKD*LYRLLI
Trigger: GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAGTCAGGCACTATTGGTaGTGCTGGTTTTACATATCT +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLVRHYW*CWFYIS
Trigger: AGATATGTAAAACCAGCAGCACCAATAGTGCCTGAC...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATTCTGGAGACATCTCTaGTACAATGGCCTCATAAGG +
Preference number: 4 (lower is better)
Translates to: VFRVLRSRIMVLLLSSAIFWRHL*YNGLIR
Trigger: CCTTATGAGGCCATTGTACCAGAGATGTCTCCAGAA...TATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp TCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCTCACTTGCTGTCACCTaGATAACTAATGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: SALVVFRVLRSRIMVLLLSLAVT*ITNVPS
Trigger: AGAAGGAACATTAGTTATCCAGGTGACAGCAAGTGA...GAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGTGGAAGCCTCAGTGTaGTACTTCATGAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTVEASV*YFMSCS
Trigger: TGAGCAGCTCATGAAGTACCACACTGAGGCTTCCAC...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CCA 90 bp GTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATAGATTTCCTATTGTCTaGGTCTGTGGCAGACACCAC +
Preference number: 4 (lower is better)
Translates to: VPALWYYSSALLYQRPLYRFPIV*VCGRHH
Trigger: GTGGTGTCTGCCACAGACCCAGACAATAGGAAATCT...ATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAAACTTGCACATACAGTaGGATCGAAGAGATCTGTTC +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLNLHIQ*DRRDLF
Trigger: GAACAGATCTCTTCGATCCCACTGTATGTGCAAGTT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTAACTTGCACATACAGTaGGATCGAAGAGATCTGTTC +
Preference number: 4 (lower is better)
Translates to: AFPHYGTTPQLCYIKGLCNLHIQ*DRRDLF
Trigger: GAACAGATCTCTTCGATCCCACTGTATGTGCAAGTT...ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp AGCGTAGGTCTGGAGGGAATCAAAAGGAGGGGCACACGGATCAGTATTAGCTTCAATGGTGCTCTTCTATaGATTCATCTCTATCCACTG +
Preference number: 4 (lower is better)
Translates to: SVGLEGIKRRGTRISISFNGALL*IHLYPL
Trigger: CAGTGGATAGAGATGAATCCATAGAAGAGCACCATT...GAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTACGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCCTTCTAGAAGTTCTGTaGAAACTGAACAGCAAACTT +
Preference number: 4 (lower is better)
Translates to: SALVVFRVLRSRIMVLLLLLEVL*KLNSKL
Trigger: AAGTTTGCTGTTCAGTTTTCACAGAACTTCTAGAAG...GAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCTTGACTTTCTTTGTTTaGGAGTTTTCTGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SALVVFRVLRSRIMVLLLLTFFV*EFSVAP
Trigger: TGGAGCAACAGAAAACTCTCAAACAAAGAAAGTCAA...GAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp TATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTTTGACTTTCTTTGTTTaGGAGTTTTCTGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: YRLLISALVVFRVLRSRILTFFV*EFSVAP
Trigger: TGGAGCAACAGAAAACTCTCAAACAAAGAAAGTCAA...AATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTGTCCTTGGCTTGAATaGTTACCCAATACTCATCTT +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVCPWLE*LPNTHL
Trigger: AAGATGAGTATTGGGTAATCATTCAAGCCAAGGACA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAGATTTCACGATCCAGTaGGTTACTTGTAGTGATTGT +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLDFTIQ*VTCSDC
Trigger: ACAATCACTACAAGTAACTCACTGGATCGTGAAATC...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGAGGTTGTACCAAGCACTaGTTTCACGATCCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRGCTKH*FHDPVS
Trigger: ACTCACTGGATCGTGAAATCAGTGCTTGGTACAACC...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTAGACTACCAAAGAGATaGGCAATCGTGTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSRLPKR*AIVSVL
Trigger: AAGCACAGACACGATTGCTCATCTCTTTGGTAGTCT...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp AGCGTAGGTCTGGAGGGAATCAAAAGGAGGGGCACACGGATCAGTATTAGCTTCTTGATGTTAAGAACTTaGACATACAGTGGGATCGAA +
Preference number: 4 (lower is better)
Translates to: SVGLEGIKRRGTRISISFLMLRT*TYSGIE
Trigger: TTCGATCCCACTGTATGTGCAAGTTCTTAACATCAA...GAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTACGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR GCA 90 bp TCAGTATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGACTGGCAGGTCTGTGTaGTCCCACTGTCACCACAGT +
Preference number: 4 (lower is better)
Translates to: SVLASSSFSRMNFLNMALTGRSV*SHCHHS
Trigger: ACTGTGGTGACAGTGGGAGCACACAGACCTGCCAGT...CAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAATACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR GCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTGAGCAATCGTGTCTGTaGTTTCCCTGTGTATCCTAT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSEQSCL*FPCVSY
Trigger: ATAGGATACACAGGGAAAGCACAGACACGATTGCTC...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGACATCTCTGGTACAATaGCCTCATAAGGTTCATCTA +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVTSLVQ*PHKVHL
Trigger: TAGATGAACCTTATGAGGCCATTGTACCAGAGATGT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTTCTGGAGACATCTCTaGTACAATGGCCTCATAAGG +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSFWRHL*YNGLIR
Trigger: CCTTATGAGGCCATTGTACCAGAGATGTCTCCAGAA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp ACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGATCACTTGCTGTCACCTaGATAACTAATGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: TCKDCLYRLLISALVVFRSLAVT*ITNVPS
Trigger: AGAAGGAACATTAGTTATCCAGGTGACAGCAAGTGA...TCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTATGACTCCTGTTGTTaGTTCAACAGAAAAATATGG +
Preference number: 4 (lower is better)
Translates to: DCLYRLLISALVVFRVLRYDSCC*FNRKIW
Trigger: CCATATTTTTCTGTTGAACCAACAACAGGAGTCATA...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAAGATTTCCTATTGTCTaGGTCTGTGGCAGACACCAC +
Preference number: 4 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTRFPIV*VCGRHH
Trigger: GTGGTGTCTGCCACAGACCCAGACAATAGGAAATCT...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAGTTCTGTGAAAACTaGACAGCAAACTTCGTGTTG +
Preference number: 4 (lower is better)
Translates to: FPSLAFPHYGTTPQLCYIKFCEN*TANFVL
Trigger: CAACACGAAGTTTGCTGTTCAGTTTTCACAGAACTT...GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR TCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTACTTCTAGAAGTTCTGTaGAAACTGAACAGCAAACTT +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLLEVL*KLNSKL
Trigger: AAGTTTGCTGTTCAGTTTTCACAGAACTTCTAGAAG...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGAAGCATTATTACCACTTaGGGGATCGTCAGCATCACT +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRSIITT*GIVSIT
Trigger: AGTGATGCTGACGATCCCTCAAGTGGTAATAATGCT...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCACCACGCCTACAAATaGTCCCTGTGGGGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIHHAYK*SLWGFF
Trigger: GAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGAAGACAGGTTCTTCTTaGAGGTTAAAACCAGTTCTA +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVKTGSS*RLKPVL
Trigger: TAGAACTGGTTTTAACCTTCAAGAAGAACCTGTCTT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAGTTTGTACTTGTAAGTaGCGGGATTCCATTGTCGGC +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLVCTCK*RDSIVG
Trigger: GCCGACAATGGAATCCCGTCACTTACAAGTACAAAC...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTACTGTGGGTATTAATGTaGAGCTGTGCTATTTTCATA +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLLWVLM*SCAIFI
Trigger: TATGAAAATAGCACAGCTTCACATTAATACCCACAG...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp CCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCTTGATGTTAAGAACTTaGACATACAGTGGGATCGAA +
Preference number: 4 (lower is better)
Translates to: PTCKDCLYRLLISALVVFLMLRT*TYSGIE
Trigger: TTCGATCCCACTGTATGTGCAAGTTCTTAACATCAA...GAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR GCA 90 bp TTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGTTCATCTCTATCCACTaGACTGATAGTCTGAATTAC +
Preference number: 4 (lower is better)
Translates to: LWFSESCVPALWYYSSALFISIH*TDSLNY
Trigger: GTAATTCAGACTATCAGTGCAGTGGATAGAGATGAA...CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR GCA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAAGGCACTATTGGTGCTaGTGGTTTTACATATCTTAT +
Preference number: 4 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLRHYWC*WFYISY
Trigger: ATAAGATATGTAAAACCAGCAGCACCAATAGTGCCT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTATCAAGCTTCTGTATaGCATATATGTCACCTGTTC +
Preference number: 4 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVYQASV*HICHLF
Trigger: GAACAGGTGACATATATGCCATACAGAAGCTTGATA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACATTCTGGAGACATCTCTaGTACAATGGCCTCATAAGG +
Preference number: 4 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTFWRHL*YNGLIR
Trigger: CCTTATGAGGCCATTGTACCAGAGATGTCTCCAGAA...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAATCGCACTGGCTGCTTaGCTTTCTTTGTTTGAGAGT +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLIALAA*LSLFES
Trigger: ACTCTCAAACAAAGAAAGTCAAGCAGCCAGTGCGAT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAAGCATTATTACCACTTaGGGGATCGTCAGCATCACT +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLSIITT*GIVSIT
Trigger: AGTGATGCTGACGATCCCTCAAGTGGTAATAATGCT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp ACATGGATGGTAAGGGTGTTTGTACTTGTAAGTGACGGGATTCCATTGTCGGCATGTCCTTGGCTTGAATaGTTACCCAATACTCATCTT +
Preference number: 4 (lower is better)
Translates to: TWMVRVFVLVSDGIPLSACPWLE*LPNTHL
Trigger: AAGATGAGTATTGGGTAATCATTCAAGCCAAGGACA...TGCCGACAATGGAATCCCGTCACTTACAAGTACAAACACCCTTACCATCCATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTAAAGCCCTAATTATTTaGCTGCACTGCAGAACCAAA +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSKALII*LHCRTK
Trigger: TTTGGTTCTGCAGTGCAGTCAAATAATTAGGGCTTT...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACACAAATGAGATCGCACTaGCTGCTTGACTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTQMRSH*LLDFLC
Trigger: ACAAAGAAAGTCAAGCAGCCAGTGCGATCTCATTTG...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTCACTTGCTGTCACCTaGATAACTAATGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSSLAVT*ITNVPS
Trigger: AGAAGGAACATTAGTTATCCAGGTGACAGCAAGTGA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp ACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGATATGACTCCTGTTGTTaGTTCAACAGAAAAATATGG +
Preference number: 4 (lower is better)
Translates to: TCKDCLYRLLISALVVFRYDSCC*FNRKIW
Trigger: CCATATTTTTCTGTTGAACCAACAACAGGAGTCATA...TCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTTATTGTCTGGGTCTGTaGCAGACACCACGCCTACAA +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIYCLGL*QTPRLQ
Trigger: TTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATA...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTGTCGGCAATTAAGATaGAGATGTAGAAGACAGGTT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSCRQLR*RCRRQV
Trigger: AACCTGTCTTCTACATCTCCATCTTAATTGCCGACA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATCTTGTCGGCAATTAAGATaGAGATGTAGAAGACAGGTT +
Preference number: 4 (lower is better)
Translates to: SRIMVLLLSSAISKASVSCRQLR*RCRRQV
Trigger: AACCTGTCTTCTACATCTCCATCTTAATTGCCGACA...AGATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp TTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGATCATGTCCTTGGCTTaGATGATTACCCAATACTCA +
Preference number: 4 (lower is better)
Translates to: FLFSEHSYTHTHTHTHTQIMSLA*MITQYS
Trigger: TGAGTATTGGGTAATCATTCAAGCCAAGGACATGAT...CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGAGATTTCACGATCCAGTaGGTTACTTGTAGTGATTGT +
Preference number: 4 (lower is better)
Translates to: SFSQSIHTHTHTHTHTHRDFTIQ*VTCSDC
Trigger: ACAATCACTACAAGTAACTCACTGGATCGTGAAATC...TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTCATGTTTTATCCCATaGATGGTAAGTCAGTTCAGT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSSCFIP*MVSQFS
Trigger: ACTGAACTGACTTACCATTCATGGGATAAAACATGA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTGATCACCAACCTGAATaGAGTGATGTAATGGAAAAT +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSDHQPE*SDVMEN
Trigger: ATTTTCCATTACATCACTTCATTCAGGTTGGTGATC...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp GGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTCTTTGAGAAGTCCCAGTGGGTaGAGATTCAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: GSFRIQDCIYQVMVTISLRSPSG*RFRDSQ
Trigger: TTGACTGTCTCTGAATCTGCACCCACTGGGACTTCT...CAAAGAGATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR GCA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTTCATCTCTATCCACTaGACTGATAGTCTGAATTAC +
Preference number: 4 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSFISIH*TDSLNY
Trigger: GTAATTCAGACTATCAGTGCAGTGGATAGAGATGAA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTTGGTTTTCCGAGTCTTaGGTTCCCGCATTATGGTAC +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIWFSES*VPALWY
Trigger: GTACCATAATGCGGGAACGCAAGACTCGGAAAACCA...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp ATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGTCGGGCAAATGAGATCGCACTaGCTGCTTGACTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: ISFFELFQNEFPEYGTVGQMRSH*LLDFLC
Trigger: ACAAAGAAAGTCAAGCAGCCAGTGCGATCTCATTTG...CCCGACAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CCA 90 bp TTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTCCAGACAACGCTCCTaGCTGACCAATCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: FLGSFRIQDCIYQVMVTISRQRS*LTNHVL
Trigger: AAGGACATGATTGGTCAGCCAGGAGCGTTGTCTGGA...GATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CCA 90 bp AAGTTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCTATTGTCTGGGTCTGTaGCAGACACCACGCCTACAA +
Preference number: 4 (lower is better)
Translates to: KFLGSFRIQDCIYQVMVTYCLGL*QTPRLQ
Trigger: TTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATA...GGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAAAGTTCTGTGAAAACTaGACAGCAAACTTCGTGTTG +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLKFCEN*TANFVL
Trigger: CAACACGAAGTTTGCTGTTCAGTTTTCACAGAACTT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAATCATGTCCTTGGCTTaGATGATTACCCAATACTCA +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLIMSLA*MITQYS
Trigger: TGAGTATTGGGTAATCATTCAAGCCAAGGACATGAT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAAATGGTGCTCTTCTATaGATTCATCTCTATCCACTG +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLNGALL*IHLYPL
Trigger: CAGTGGATAGAGATGAATCCATAGAAGAGCACCATT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCCACAGTCACAGACATaGATGGTAAGGGTGTTTGTA +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIPQSQT*MVRVFV
Trigger: TACAAACACCCTTACCATCCATGTCTGTGACTGTGG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCATCGCACTGGCTGCTTaGCTTTCTTTGTTTGAGAGT +
Preference number: 4 (lower is better)
Translates to: FLGSFRIQDCIYQVMVTIIALAA*LSLFES
Trigger: ACTCTCAAACAAAGAAAGTCAAGCAGCCAGTGCGAT...GATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTACCATGTGAAATAGGTTaGTTGGACGTCATTTTACAA +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLPCEIG*LDVILQ
Trigger: TTGTAAAATGACGTCCAATCAACCTATTTCACATGG...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTATTCATAACAACCATGTaGAATAGGTTGATTGGACGT +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLFITTM*NRLIGR
Trigger: ACGTCCAATCAACCTATTTCACATGGTTGTTATGAA...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAAGACTGACAATTTCTTaGCCATTAAGGGTTACATTC +
Preference number: 4 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLRLTIS*PLRVTF
Trigger: GAATGTAACCCTTAATGGGCAAGAAATTGTCAGTCT...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCAAATGAGATCGCACTaGCTGCTTGACTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIQMRSH*LLDFLC
Trigger: ACAAAGAAAGTCAAGCAGCCAGTGCGATCTCATTTG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTCTTTGTGTCCTTGGCTTGAATaGTTACCCAATACTCATCTT +
Preference number: 4 (lower is better)
Translates to: GSFRIQDCIYQVMVTISLCPWLE*LPNTHL
Trigger: AAGATGAGTATTGGGTAATCATTCAAGCCAAGGACA...CAAAGAGATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp TCAGTATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGATCATGTCCTTGGCTTaGATGATTACCCAATACTCA +
Preference number: 4 (lower is better)
Translates to: SVLASSSFSRMNFLNMALIMSLA*MITQYS
Trigger: TGAGTATTGGGTAATCATTCAAGCCAAGGACATGAT...CAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAATACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR TCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCATTGCGTTAAGGATTaGCTACATCTTATGTCCTCT +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIHCVKD*LHLMSS
Trigger: AGAGGACATAAGATGTAGTCAATCCTTAACGCAATG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR GCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCTTTTATTTTCAATGTaGCGTGAGGCTGTTGAGATC +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRILLFSM*REAVEI
Trigger: GATCTCAACAGCCTCACGGCACATTGAAAATAAAAG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTCTTTGACATCTCTGGTACAATaGCCTCATAAGGTTCATCTA +
Preference number: 4 (lower is better)
Translates to: GSFRIQDCIYQVMVTISLTSLVQ*PHKVHL
Trigger: TAGATGAACCTTATGAGGCCATTGTACCAGAGATGT...CAAAGAGATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CCA 90 bp TCAGTATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGACATCTCTGGTACAATaGCCTCATAAGGTTCATCTA +
Preference number: 4 (lower is better)
Translates to: SVLASSSFSRMNFLNMALTSLVQ*PHKVHL
Trigger: TAGATGAACCTTATGAGGCCATTGTACCAGAGATGT...CAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAATACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCATATATGGCCAGTTTaGTTCAGCTTAGTCTCACAT +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIHIWPV*FSLVSH
Trigger: ATGTGAGACTAAGCTGAACCAAACTGGCCATATATG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTTTGACTTTCTTTGTTTaGGAGTTTTCTGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRILTFFV*EFSVAP
Trigger: TGGAGCAACAGAAAACTCTCAAACAAAGAAAGTCAA...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTCGTCATTTTACAAAGTaGGATCTGGAAAGATTAAGC +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIRHFTK*DLERLS
Trigger: GCTTAATCTTTCCAGATCTCACTTTGTAAAATGACG...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR TCA 90 bp GGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTCTTTGAGGCCTTGTACTTGTTaGAAGCAAGGGAAAATATTT +
Preference number: 4 (lower is better)
Translates to: GSFRIQDCIYQVMVTISLRPCTC*KQGKIF
Trigger: AAATATTTTCCCTTGCTTTCAACAAGTACAAGGCCT...CAAAGAGATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR GCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTTTGATGTTAAGAACTTaGACATACAGTGGGATCGAA +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRILMLRT*TYSGIE
Trigger: TTCGATCCCACTGTATGTGCAAGTTCTTAACATCAA...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp AAGTTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCTCACTTGCTGTCACCTaGATAACTAATGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: KFLGSFRIQDCIYQVMVTSLAVT*ITNVPS
Trigger: AGAAGGAACATTAGTTATCCAGGTGACAGCAAGTGA...GGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR TCA 90 bp AAGTTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCTTGACTTTCTTTGTTTaGGAGTTTTCTGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KFLGSFRIQDCIYQVMVTLTFFV*EFSVAP
Trigger: TGGAGCAACAGAAAACTCTCAAACAAAGAAAGTCAA...GGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR GCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTAATCATCCTCTTCAATaGTGTAATCCATTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRINHPLQ*CNPFLH
Trigger: ATGCAGAAATGGATTACAGCATTGAAGAGGATGATT...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTTATGACTCCTGTTGTTaGTTCAACAGAAAAATATGG +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIYDSCC*FNRKIW
Trigger: CCATATTTTTCTGTTGAACCAACAACAGGAGTCATA...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTGTCATATGCCAGAGCTaGTTTTATAAGGCTTTTATT +
Preference number: 4 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIVICQS*FYKAFI
Trigger: AATAAAAGCCTTATAAAACCAGCTCTGGCATATGAC...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CCA 90 bp AAGTTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCTATGACTCCTGTTGTTaGTTCAACAGAAAAATATGG +
Preference number: 4 (lower is better)
Translates to: KFLGSFRIQDCIYQVMVTYDSCC*FNRKIW
Trigger: CCATATTTTTCTGTTGAACCAACAACAGGAGTCATA...GGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAACTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CAA 90 bp TGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTCTCGATGTGCCCCATaGCCCAGAGTTACAGACGCT +
Preference number: 5 (lower is better)
Translates to: CKDCLYRLLISALVVFRVSRCAP*PRVTDA
Trigger: AGCGTCTGTAACTCTGGGCAATGGGGCACATCGAGA...GACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp CTGAATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTGGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTA +
Preference number: 5 (lower is better)
Translates to: LNMALSGPTCKDCLYRLLVVFRV*RSRIMV
Trigger: TACCATAATGCGGGAACGCAAGACTCGGAAAACCAC...CAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGTCTTTCTGAGGAAGTaGCAGCTGATCACCAACCTG +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVVFLRK*QLITNL
Trigger: CAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGAC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp AAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGAGTGACGGGATTCCATaGTCGGCAATTAAGATGGAG +
Preference number: 5 (lower is better)
Translates to: KDCLYRLLISALVVFRVLSDGIP*SAIKME
Trigger: CTCCATCTTAATTGCCGACAATGGAATCCCGTCACT...CAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTA +
Preference number: 5 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKVVFRV*RSRIMV
Trigger: TACCATAATGCGGGAACGCAAGACTCGGAAAACCAC...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp AATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTTTGAGAGTTTTCTGTaGCTCCAAGACAAGGCCATA +
Preference number: 5 (lower is better)
Translates to: NMALSGPTCKDCLYRLLIFESFL*LQDKAI
Trigger: TATGGCCTTGTCTTGGAGCAACAGAAAACTCTCAAA...GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp AGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGAATCATGTCCTTGGCTaGAATGATTACCCAATACTC +
Preference number: 5 (lower is better)
Translates to: RLLISALVVFRVLRSRIMNHVLG*NDYPIL
Trigger: GAGTATTGGGTAATCATTCAAGCCAAGGACATGATT...CATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATAATAGGAGATTTCCTATaGTCTGGGTCTGTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: VFRVLRSRIMVLLLSSAIIGDFL*SGSVAD
Trigger: GTCTGCCACAGACCCAGACAATAGGAAATCTCCTAT...TATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAATAGGAGATTTCCTATaGTCTGGGTCTGTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKIGDFL*SGSVAD
Trigger: GTCTGCCACAGACCCAGACAATAGGAAATCTCCTAT...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCCGAGTCTTGCGTGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCA +
Preference number: 5 (lower is better)
Translates to: DCLYRLLISALVVFRVLRAVILR*YQALIS
Trigger: TGAAATCAGTGCTTGGTACAACCTAAGTATTACAGC...ACGCAAGACTCGGAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp AGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGCGTAGGTCTGGAGAAGACAGGTTCTTCTaGAAGGTTAAAACCAGTTCT +
Preference number: 5 (lower is better)
Translates to: RSSGIQLMTLFPQKRRSGEDRFF*KVKTSS
Trigger: AGAACTGGTTTTAACCTTCAAGAAGAACCTGTCTTC...TCCAGACCTACGCTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTTGTGCCGTGAGGCTGTaGAGATCACTCAGAATTGGA +
Preference number: 5 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSCAVRL*RSLRIG
Trigger: TCCAATTCTGAGTGATCTCAACAGCCTCACGGCACA...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGTTTGAGAGTTTTCTGTaGCTCCAAGACAAGGCCATA +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVFESFL*LQDKAI
Trigger: TATGGCCTTGTCTTGGAGCAACAGAAAACTCTCAAA...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp TTGTGGTTTTCCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGTTTGAGAGTTTTCTGTaGCTCCAAGACAAGGCCATA +
Preference number: 5 (lower is better)
Translates to: LWFSESCVPALWYYSSALFESFL*LQDKAI
Trigger: TATGGCCTTGTCTTGGAGCAACAGAAAACTCTCAAA...CAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp AATATGGCACTGTCGGGGCCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCAATCATGTCCTTGGCTaGAATGATTACCCAATACTC +
Preference number: 5 (lower is better)
Translates to: NMALSGPTCKDCLYRLLINHVLG*NDYPIL
Trigger: GAGTATTGGGTAATCATTCAAGCCAAGGACATGATT...GATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GCTGATTCTAAGGAGCTCAGGGATCCAGCTAATGACCCTGTTCCCTCAAAAGCGGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCA +
Preference number: 5 (lower is better)
Translates to: ADSKELRDPANDPVPSKAAVILR*YQALIS
Trigger: TGAAATCAGTGCTTGGTACAACCTAAGTATTACAGC...CGCTTTTGAGGGAACAGGGTCATTAGCTGGATCCCTGAGCTCCTTAGAATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTAGTGACGGGATTCCATaGTCGGCAATTAAGATGGAG +
Preference number: 5 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSSDGIP*SAIKME
Trigger: CTCCATCTTAATTGCCGACAATGGAATCCCGTCACT...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATGATGACTTCTGTCTaGAATCCCATGGAAAGCACA +
Preference number: 5 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLMMTSV*NPMEST
Trigger: TGTGCTTTCCATGGGATTCAAGACAGAAGTCATCAT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CCAACTTGCAAAGACTGCCTGTATAGGCTCCTGATCTCAGCGCTTGTGGTTTTCATGATGACTTCTGTCTaGAATCCCATGGAAAGCACA +
Preference number: 5 (lower is better)
Translates to: PTCKDCLYRLLISALVVFMMTSV*NPMEST
Trigger: TGTGCTTTCCATGGGATTCAAGACAGAAGTCATCAT...GAAAACCACAAGCGCTGAGATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGCCCAACAGCTTAGCATaGATTTCCTTCTTAAGGCTA +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVPNSLA*ISFLRL
Trigger: TAGCCTTAAGAAGGAAATCAATGCTAAGCTGTTGGG...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGAATCATGTCCTTGGCTaGAATGATTACCCAATACTC +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVNHVLG*NDYPIL
Trigger: GAGTATTGGGTAATCATTCAAGCCAAGGACATGATT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp TTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGATAGGAGATTTCCTATaGTCTGGGTCTGTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: FLFSEHSYTHTHTHTHTQIGDFL*SGSVAD
Trigger: GTCTGCCACAGACCCAGACAATAGGAAATCTCCTAT...CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCA +
Preference number: 5 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLAVILR*YQALIS
Trigger: TGAAATCAGTGCTTGGTACAACCTAAGTATTACAGC...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGATTGATGTTAAGAACTaGCACATACAGTGGGATCGA +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVIDVKN*HIQWDR
Trigger: TCGATCCCACTGTATGTGCAAGTTCTTAACATCAAT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGATAAGTCTCATAGTATaGAGAGAACTCAGGAGCATG +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVISLIV*RELRSM
Trigger: CATGCTCCTGAGTTCTCTCAATACTATGAGACTTAT...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp GCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATAAGTCTCATAGTATaGAGAGAACTCAGGAGCATG +
Preference number: 5 (lower is better)
Translates to: AFPHYGTTPQLCYIKGLCISLIV*RELRSM
Trigger: CATGCTCCTGAGTTCTCTCAATACTATGAGACTTAT...ACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GCAGCAGTGGTCTTTCTGAGGAAGTTGCAGCTGATCACCAACCTGAATGAAGTGGAAGACAGGTTCTTCTaGAAGGTTAAAACCAGTTCT +
Preference number: 5 (lower is better)
Translates to: AAVVFLRKLQLITNLNEVEDRFF*KVKTSS
Trigger: AGAACTGGTTTTAACCTTCAAGAAGAACCTGTCTTC...CACTTCATTCAGGTTGGTGATCAGCTGCAACTTCCTCAGAAAGACCACTGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp TCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAATTTTCTTAGAGCATTATTACCACTaGAGGGATCGTCAGCATCAC +
Preference number: 5 (lower is better)
Translates to: SSTCTEGTTSSSLVLIFLEHYYH*RDRQHH
Trigger: GTGATGCTGACGATCCCTCAAGTGGTAATAATGCTC...TAAGAAAATTAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CCGAGTCTTGCGTTCCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAATTGATGTTAAGAACTaGCACATACAGTGGGATCGA +
Preference number: 5 (lower is better)
Translates to: PSLAFPHYGTTPQLCYIKIDVKN*HIQWDR
Trigger: TCGATCCCACTGTATGTGCAAGTTCTTAACATCAAT...TTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp TCTAATACAAAGCAAGACAAAGCCAGGGTCACTGGAAGCAGCAGTGGTCTTTCTACATATATGGCCAGTTaGGTTCAGCTTAGTCTCACA +
Preference number: 5 (lower is better)
Translates to: SNTKQDKARVTGSSSGLSTYMAS*VQLSLT
Trigger: TGTGAGACTAAGCTGAACCAAACTGGCCATATATGT...AGAAAGACCACTGCTGCTTCCAGTGACCCTGGCTTTGTCTTGCTTTGTATTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CTGTTAGGCTCAAGCACATGCACTGAGGGAACAACTAGCAGTTCGCTAGTCCTAAAGACTGACAATTTCTaGCCCATTAAGGGTTACATT +
Preference number: 5 (lower is better)
Translates to: LLGSSTCTEGTTSSSLVLKTDNF*PIKGYI
Trigger: AATGTAACCCTTAATGGGCAAGAAATTGTCAGTCTT...TAGGACTAGCGAACTGCTAGTTGTTCCCTCAGTGCATGTGCTTGAGCCTAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CCCGCATTATGGTACTACTCCTCAGCTCTGCTATATCAAAGGCCTCTGTATCTTATAAGTCTCATAGTATaGAGAGAACTCAGGAGCATG +
Preference number: 5 (lower is better)
Translates to: PALWYYSSALLYQRPLYLISLIV*RELRSM
Trigger: CATGCTCCTGAGTTCTCTCAATACTATGAGACTTAT...AAGATACAGAGGCCTTTGATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTGTGGTTTTCCGAGTCTaGCGTTCCCGCATTATGGTA +
Preference number: 5 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIVVFRV*RSRIMV
Trigger: TACCATAATGCGGGAACGCAAGACTCGGAAAACCAC...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS TCA 90 bp AGATTTCCTATTGTCTGGGTCTGTGGCAGACACCACGCCTACAAATaGTCCCTGTGGGGTTTCTTCAAAAACTTCAAATACATAATATGG +
Preference number: 5 (lower is better)
Translates to: RFPIVWVCGRHHAYK*SLWGFFKNFKYIIW
Trigger: CCATATTATGTATTTGAAGTTTTTGAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATAGGAAATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000262150.7
ENST00000454642.3
ENST00000540086.5
ENST00000579658.5
CDS-3UTR CAA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTATAGGAGATTTCCTATaGTCTGGGTCTGTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIIGDFL*SGSVAD
Trigger: GTCTGCCACAGACCCAGACAATAGGAAATCTCCTAT...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp CTTCCTTTTCTCAGAGCATTCATACACACACACACACACACACACACACACACAGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCA +
Preference number: 5 (lower is better)
Translates to: LPFLRAFIHTHTHTHTHTAVILR*YQALIS
Trigger: TGAAATCAGTGCTTGGTACAACCTAAGTATTACAGC...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAATGCTCTGAGAAAAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CAA 90 bp TTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCTTTGAGAGTTTTCTGTaGCTCCAAGACAAGGCCATA +
Preference number: 5 (lower is better)
Translates to: FLGSFRIQDCIYQVMVTIFESFL*LQDKAI
Trigger: TATGGCCTTGTCTTGGAGCAACAGAAAACTCTCAAA...GATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CAA 90 bp TCAGTATTAGCTTCTTCGAGCTTTTCCAGAATGAATTTCCTGAATATGGCACTGATTGATGTTAAGAACTaGCACATACAGTGGGATCGA +
Preference number: 5 (lower is better)
Translates to: SVLASSSFSRMNFLNMALIDVKN*HIQWDR
Trigger: TCGATCCCACTGTATGTGCAAGTTCTTAACATCAAT...CAGTGCCATATTCAGGAAATTCATTCTGGAAAAGCTCGAAGAAGCTAATACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS-3UTR CAA 90 bp GAAGTTGACTTTTATTTTCAATGTGCCGTGAGGCTGTTGAGATCACTCAGAATTAAAAGCCCTAATTATTaGACTGCACTGCAGAACCAA +
Preference number: 5 (lower is better)
Translates to: EVDFYFQCAVRLLRSLRIKSPNY*TALQNQ
Trigger: TTGGTTCTGCAGTGCAGTCAAATAATTAGGGCTTTT...AATTCTGAGTGATCTCAACAGCCTCACGGCACATTGAAAATAAAAGTCAACTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000262150.7
CDS-3UTR CAA 90 bp TTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCATCAGTTCAACAAGTTTCTaGGAAGCTTTAGGATCCAGG +
Preference number: 5 (lower is better)
Translates to: FLGSFRIQDCIYQVMVTISSTSF*EALGSR
Trigger: CCTGGATCCTAAAGCTTCCAAGAAACTTGTTGAACT...GATGGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS-3UTR CAA 90 bp AAGTTTCTTGGAAGCTTTAGGATCCAGGATTGTATTTATCAAGTAATGGTGACCAATCATGTCCTTGGCTaGAATGATTACCCAATACTC +
Preference number: 5 (lower is better)
Translates to: KFLGSFRIQDCIYQVMVTNHVLG*NDYPIL
Trigger: GAGTATTGGGTAATCATTCAAGCCAAGGACATGATT...GGTCACCATTACTTGATAAATACAATCCTGGATCCTAAAGCTTCCAAGAAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS GCA 72 bp TCACAGTCTTCTCAGCAAACTCTCGATGTGCCCCATTaGCCAGAGTTACAGACGCTTGTGCTTTTAGTACCA +
Preference number: 6 (lower is better)
Translates to: SQSSQQTLDVPH*PELQTLVLLVP
Trigger: TGGTACTAAAAGCACAAGCGTCTGTAACTCTGGGCAATGGGGCACATCGAGAGTTTGCTGAGAAGACTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS CAA 72 bp TTCACAGTCTTCTCAGCAAACTCTCGATGTGCCCCATaGCCCAGAGTTACAGACGCTTGTGCTTTTAGTACC +
Preference number: 6 (lower is better)
Translates to: FTVFSANSRCAP*PRVTDACAFST
Trigger: GGTACTAAAAGCACAAGCGTCTGTAACTCTGGGCAATGGGGCACATCGAGAGTTTGCTGAGAAGACTGTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS GCA 72 bp TTTTTGCTTCACAGTCTTCTCAGCAAACTCTCGATGTaGCCCATTGCCCAGAGTTACAGACGCTTGTGCTTT +
Preference number: 6 (lower is better)
Translates to: FLLHSLLSKLSM*PIAQSYRRLCF
Trigger: AAAGCACAAGCGTCTGTAACTCTGGGCAATGGGGCACATCGAGAGTTTGCTGAGAAGACTGTGAAGCAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000579658.5
CDS GCA 72 bp AAAATGGTGCTCTTCTATGGATTCATCTCTATCCACTaGACTGATAGTCTGAATTACCTGACCAGAGCCTGC +
Preference number: 6 (lower is better)
Translates to: KMVLFYGFISIH*TDSLNYLTRAC
Trigger: GCAGGCTCTGGTCAGGTAATTCAGACTATCAGTGCAGTGGATAGAGATGAATCCATAGAAGAGCACCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262150.7
ENST00000579658.5
CDS CAA 72 bp CTCCTAGTAATAGAATACCTGATAGGAGATTTCCTATaGTCTGGGTCTGTGGCAGACACCACGCCTACAAAT +
Preference number: 6 (lower is better)
Translates to: LLVIEYLIGDFL*SGSVADTTPTN
Trigger: ATTTGTAGGCGTGGTGTCTGCCACAGACCCAGACAATAGGAAATCTCCTATCAGGTATTCTATTACTAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000262150.7
ENST00000454642.3
ENST00000540086.5
ENST00000579658.5
CDS TCA 72 bp ACATTTCCCTTGAGAACTGGAACAAGACAAGGATGCTaGCTCTCACCACTCCTATTTAATATAGCTGTGGAA +
Preference number: 6 (lower is better)
Translates to: TFPLRTGTRQGC*LSPLLFNIAVE
Trigger: TTCCACAGCTATATTAAATAGGAGTGGTGAGAGTCAGCATCCTTGTCTTGTTCCAGTTCTCAAGGGAAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000580157.2
CDS CAA 72 bp AGAGAACTCAGGAGCATGATCATTGATGTTAAGAACTaGCACATACAGTGGGATCGAAGAGATCTGTTCTAT +
Preference number: 6 (lower is better)
Translates to: RELRSMIIDVKN*HIQWDRRDLFY
Trigger: ATAGAACAGATCTCTTCGATCCCACTGTATGTGCAAGTTCTTAACATCAATGATCATGCTCCTGAGTTCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000262150.7
ENST00000540086.5
ENST00000579658.5
CDS CAA 90 bp AATACAGCATCCCTATATCATTTTTCTGTGGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCACGATCCAGTGAGTTACTTGTAGTG +
Preference number: 6 (lower is better)
Translates to: NTASLYHFSVAVILR*YQALISRSSELLVV
Trigger: CACTACAAGTAACTCACTGGATCGTGAAATCAGTGCTTGGTACAACCTAAGTATTACAGCCACAGAAAAATGATATAGGGATGCTGTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454642.3
CDS CAA 90 bp GAGATCTGTTCTATATTGTATTTTTCTGTGGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCACGATCCAGTGAGTTACTTGTAGTG +
Preference number: 6 (lower is better)
Translates to: EICSILYFSVAVILR*YQALISRSSELLVV
Trigger: CACTACAAGTAACTCACTGGATCGTGAAATCAGTGCTTGGTACAACCTAAGTATTACAGCCACAGAAAAATACAATATAGAACAGATCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000262150.7
ENST00000540086.5
ENST00000579658.5
CDS CAA 90 bp CGATCCAGTGAGTTACTTGTAGTGATTGTACCATTATCATTGATATaGAACACTTTGCTCCTAGTAATAGAATACCTGATAGGAGATTTC +
Preference number: 6 (lower is better)
Translates to: RSSELLVVIVPLSLI*NTLLLVIEYLIGDF
Trigger: GAAATCTCCTATCAGGTATTCTATTACTAGGAGCAAAGTGTTCAATATCAATGATAATGGTACAATCACTACAAGTAACTCACTGGATCG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000262150.7
ENST00000454642.3
ENST00000540086.5
ENST00000579658.5
CDS CAA 72 bp TCTATATTGTATTTTTCTGTGGCTGTAATACTTAGGTaGTACCAAGCACTGATTTCACGATCCAGTGAGTTA +
Preference number: 6 (lower is better)
Translates to: SILYFSVAVILR*YQALISRSSEL
Trigger: TAACTCACTGGATCGTGAAATCAGTGCTTGGTACAACCTAAGTATTACAGCCACAGAAAAATACAATATAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000262150.7
ENST00000540086.5
ENST00000579658.5