RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDCA3 (Homo sapiens)

Ensembl gene IDs: ENSG00000111665

Ensembl transcript IDs: ENST00000229265.10, ENST00000422785.7, ENST00000446553.2, ENST00000535406.5, ENST00000535871.1, ENST00000536241.1, ENST00000538862.7, ENST00000540683.1, ENST00000544610.1, ENST00000545368.5, ENST00000603043.1, ENST00000604599.1

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGCAGAGGGCGGGAGAGGCTGTGGGCTGCCCAGGTCTGATCCCTaGCCCACTTGCCACCCGTGCCCTCAGTTCTTCCCCAATGGAGAG +
Preference number: 1 (lower is better)
Translates to: EAEGGRGCGLPRSDP*PTCHPCPQFFPNGE
Trigger: CTCTCCATTGGGGAAGAACTGAGGGCACGGGTGGCAAGTGGGTCAGGGATCAGACCTGGGCAGCCCACAGCCTCTCCCGCCCTCTGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 90 bp ACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTaGTCTTGCCTGCGACGTGGAAATGATGCCTGCCTGCAGCGCTGT +
Preference number: 1 (lower is better)
Translates to: TSVRPSSRVTAGKPW*SCLRRGNDACLQRC
Trigger: ACAGCGCTGCAGGCAGGCATCATTTCCACGTCGCAGGCAAGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 90 bp GAGCGGGCGAGGGGCATAGGGAAGTCACTGGCACGTGGTATGTGTTaGCAGGGCTGCTTCTCACCCCAAACCAAGGGAGGGACAGGCAGG +
Preference number: 1 (lower is better)
Translates to: ERARGIGKSLARGMC*QGCFSPQTKGGTGR
Trigger: CCTGCCTGTCCCTCCCTTGGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCCTATGCCCCTCGCCCGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 90 bp AGGGGCATAGGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTaGTTCTCACCCCAAACCAAGGGAGGGACAGGCAGGGAGGCTGAG +
Preference number: 1 (lower is better)
Translates to: RGIGKSLARGMCWQG*FSPQTKGGTGREAE
Trigger: CTCAGCCTCCCTGCCTGTCCCTCCCTTGGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCCTATGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTaGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACT +
Preference number: 1 (lower is better)
Translates to: WTLFLHTLIQPTCVV*ESGTTSVRPSSRVT
Trigger: AGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 90 bp GCTCTAAGCAGCCTCTCTCCACTGCCCAATGCCATGACTGCTCCCTaGCCTAGGAGATCTGTGGACCATGACTGTCCAGTCAGTTCTGGG +
Preference number: 1 (lower is better)
Translates to: ALSSLSPLPNAMTAP*PRRSVDHDCPVSSG
Trigger: CCCAGAACTGACTGGACAGTCATGGTCCACAGATCTCCTAGGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAGAGGCTGCTTAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 90 bp ATTTCAGGGGCACCCACTGAGAGGCAAGACAGCCTCAGGGAAACATaGAATCAAGGCAGAATCAAGGAGATCTGGAGTGGCCCGAGGGCC +
Preference number: 1 (lower is better)
Translates to: ISGAPTERQDSLRET*NQGRIKEIWSGPRA
Trigger: GGCCCTCGGGCCACTCCAGATCTCCTTGATTCTGCCTTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 90 bp CAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTaGCTCCACCCCTGGAATCCAGTACCCCTTGGTTCCCAACTAGGA +
Preference number: 1 (lower is better)
Translates to: QLPFRTLLLLSLVTG*LHPWNPVPLGSQLG
Trigger: TCCTAGTTGGGAACCAAGGGGTACTGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTaGGTGACTCCACCCCTGGAATCCAGTACCCCTTGGTTCCCAACT +
Preference number: 1 (lower is better)
Translates to: PSAPISDSLTAVPCH*VTPPLESSTPWFPT
Trigger: AGTTGGGAACCAAGGGGTACTGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 90 bp TCCAGTACCCCTTGGTTCCCAACTAGGACTGTTTTCCCTCAGTGTTaGTCTAAGCAGCCTCTCTCCACTGCCCAATGCCATGACTGCTCC +
Preference number: 1 (lower is better)
Translates to: SSTPWFPTRTVFPQC*SKQPLSTAQCHDCS
Trigger: GGAGCAGTCATGGCATTGGGCAGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAACCAAGGGGTACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 90 bp ACTGTCCAGTCAGTTCTGGGTTCCTGGCATTTCAGGGGCACCCACTaGGAGGCAAGACAGCCTCAGGGAAACATGGAATCAAGGCAGAAT +
Preference number: 1 (lower is better)
Translates to: TVQSVLGSWHFRGTH*EARQPQGNMESRQN
Trigger: ATTCTGCCTTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAATGCCAGGAACCCAGAACTGACTGGACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 90 bp TATCTGACATTTGCTCGCCGTGAGATCCAGGCCTTGCATTTGTACTaGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTC +
Preference number: 1 (lower is better)
Translates to: YLTFARREIQALHLY*TLFLHTLIQPTCVV
Trigger: GACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAATGCAAGGCCTGGATCTCACGGCGAGCAAATGTCAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 90 bp CTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTaGGTGTCCTTGCACAAGTCACTCCTCCATGGGCCTCAGTTTCTT +
Preference number: 1 (lower is better)
Translates to: LARGRIQILILLLTF*VSLHKSLLHGPQFL
Trigger: AAGAAACTGAGGCCCATGGAGGAGTGACTTGTGCAAGGACACTCAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 90 bp TGTAGACTCTCCCTCCGTTTGAGCTTATCTGACATTTGCTCGCCGTaGGATCCAGGCCTTGCATTTGTACTGGACCCTGTTCTTACACAC +
Preference number: 1 (lower is better)
Translates to: CRLSLRLSLSDICSP*DPGLAFVLDPVLTH
Trigger: GTGTGTAAGAACAGGGTCCAGTACAAATGCAAGGCCTGGATCTCACGGCGAGCAAATGTCAGATAAGCTCAAACGGAGGGAGAGTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 90 bp TTTTTGAAGAGTACAAACCAGTTTTCTGTAGACTCTCCCTCCGTTTaGGCTTATCTGACATTTGCTCGCCGTGAGATCCAGGCCTTGCAT +
Preference number: 1 (lower is better)
Translates to: FLKSTNQFSVDSPSV*AYLTFARREIQALH
Trigger: ATGCAAGGCCTGGATCTCACGGCGAGCAAATGTCAGATAAGCTCAAACGGAGGGAGAGTCTACAGAAAACTGGTTTGTACTCTTCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CAA 90 bp AGAGCGGGCGAGGGGCATAGGGAAGTCACTGGCACGTGGTATGTGTaGGCAGGGCTGCTTCTCACCCCAAACCAAGGGAGGGACAGGCAG +
Preference number: 2 (lower is better)
Translates to: RAGEGHREVTGTWYV*AGLLLTPNQGRDRQ
Trigger: CTGCCTGTCCCTCCCTTGGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCCTATGCCCCTCGCCCGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGGCCTTCTCCCTCAGTaGCCGCCTACTATTCGCTGG +
Preference number: 2 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRGLLPQ*PPTIRW
Trigger: CCAGCGAATAGTAGGCGGCCACTGAGGGAGAAGGCC...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCGCGGCATCACGTCCGTaGCCTTCTCCCTCAGTGGCC +
Preference number: 2 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTAASRP*PSPSVA
Trigger: GGCCACTGAGGGAGAAGGCCACGGACGTGATGCCGC...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTTCCCTTGTCACTGGGTaGCTCCACCCCTGGAATCCA +
Preference number: 2 (lower is better)
Translates to: SLGQPPSALLAGSLQASLSLVTG*LHPWNP
Trigger: TGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGA...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCTGAGAGCAGCGGCTTaGCCTGGAGCTGTCAGGTGG +
Preference number: 2 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTLRAAA*PGAVRW
Trigger: CCACCTGACAGCTCCAGGGCAAGCCGCTGCTCTCAG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTTCAGTTCTGGGTTCCTaGCATTTCAGGGGCACCCAC +
Preference number: 2 (lower is better)
Translates to: SLGQPPSALLAGSLQASLSVLGS*HFRGTH
Trigger: GTGGGTGCCCCTGAAATGCCAGGAACCCAGAACTGA...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCGCCTTCTTCAGGGGTTaGGCCCAGTCTACCGAGTCT +
Preference number: 2 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTAFFRG*AQSTES
Trigger: AGACTCGGTAGACTGGGCTCAACCCCTGAAGAAGGC...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTATGTCTGGGACTCCATaGAGTCTGAGCGTGTGGGTA +
Preference number: 2 (lower is better)
Translates to: SLGQPPSALLAGSLQASLMSGTP*SLSVWV
Trigger: TACCCACACGCTCAGACTTCATGGAGTCCCAGACAT...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTCCCAACCAAAGCTCTTaGCAGAGAACCCCCTGCCCT +
Preference number: 2 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESPNQSS*QRTPCP
Trigger: AGGGCAGGGGGTTCTCTGTCAAGAGCTTTGGTTGGG...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTCAAGGAGATCTGGAGTaGCCCGAGGGCCCTGACTGC +
Preference number: 2 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTQGDLE*PEGPDC
Trigger: GCAGTCAGGGCCCTCGGGCCACTCCAGATCTCCTTG...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGTTCATAGTACACAGATaGTTCCAGCCTTTCTCTGTC +
Preference number: 2 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRFIVHR*FQPFSV
Trigger: GACAGAGAAAGGCTGGAAGCATCTGTGTACTATGAA...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGCTCTCCACTGCCCAATaGCATGACTGCTCCCTGCCC +
Preference number: 2 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLLSTAQ*HDCSLP
Trigger: GGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAG...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTAGCAAAGAAATAGGATaGACGGTTGCCTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: SLGQPPSALLAGSLQASLSKEIG*TVAFSF
Trigger: AAAAGAGAAGGCAACCGTTCATCCTATTTCTTTGCT...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR TCA 90 bp GTTGCTCTAAGCAGCCTCTCTCCACTGCCCAATGCCATGACTGCTCCCTGCCCTCATCTAAGACTAGCCTaGAGTTGGTCAGATAGGATG +
Preference number: 2 (lower is better)
Translates to: VALSSLSPLPNAMTAPCPHLRLA*SWSDRM
Trigger: CATCCTATCTGACCAACTTCAGGCTAGTCTTAGATG...AGGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAGAGGCTGCTTAGAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCAATAGGATGAACGGTTaGCTTCTCTTTTCCAGCACC +
Preference number: 2 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTNRMNG*LLFSST
Trigger: GGTGCTGGAAAAGAGAAGGCAACCGTTCATCCTATT...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGAATGGAGAGGCCATCTaGACGGGCTCGGATGACGCT +
Preference number: 2 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLNGEAI*TGSDDA
Trigger: AGCGTCATCCGAGCCCGTGCAGATGGCCTCTCCATT...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGATACACTTACACGCATaGACACACTGCTTTCCAAAT +
Preference number: 2 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMIHLHA*THCFPN
Trigger: ATTTGGAAAGCAGTGTGTGCATGCGTGTAAGTGTAT...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTCTTTCTGAGTGTCCTTaGACAAGTCACTCCTCCATG +
Preference number: 2 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTLSECP*TSHSSM
Trigger: CATGGAGGAGTGACTTGTGCAAGGACACTCAGAAAG...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGCTTTCCAAATCAGCTTaGAGAGACAGGCTGACTCCT +
Preference number: 2 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLLSKSA*RDRLTP
Trigger: AGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAG...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGCACGCATGCACACACTaGTTTCCAAATCAGCTTGGA +
Preference number: 2 (lower is better)
Translates to: DRMASSLSRGQVLMKITLHACTH*FPNQLG
Trigger: TCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTG...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR GCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGACCAGGAGCTGATCTaGTTCTCCCACGAGAGCATC +
Preference number: 2 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFDQELI*FSHESI
Trigger: GATGCTCTCGTGGGAGAAGCAGATCAGCTCCTGGTC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGCCCTAGGAGATCTGTaGACCATGACTGTCCAGTCA +
Preference number: 2 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFALGDL*TMTVQS
Trigger: TGACTGGACAGTCATGGTCCACAGATCTCCTAGGGC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGTTGGTCAGATAGGATaGCTTCTTCTCTATCAAGAG +
Preference number: 2 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFVGQIG*LLLYQE
Trigger: CTCTTGATAGAGAAGAAGCCATCCTATCTGACCAAC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 72 bp GGCGGGAGAGGCTGTGGGCTGCCCAGGTCTGATCCCTaGCCCACTTGCCACCCGTGCCCTCAGTTCTTCCCC +
Preference number: 3 (lower is better)
Translates to: GGRGCGLPRSDP*PTCHPCPQFFP
Trigger: GGGGAAGAACTGAGGGCACGGGTGGCAAGTGGGTCAGGGATCAGACCTGGGCAGCCCACAGCCTCTCCCGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGACGCTTCCTGCCGCTaGTTTGACCTGCGGGCAGAC +
Preference number: 3 (lower is better)
Translates to: SLGQPPSALLAGSLQASLDASCR*FDLRAD
Trigger: GTCTGCCCGCAGGTCAAACAAGCGGCAGGAAGCGTC...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGCACTGCAGGCAAGCCTaGGTGCTCTTGCCTGCGACG +
Preference number: 3 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRHCRQA*VLLPAT
Trigger: CGTCGCAGGCAAGAGCACCAAGGCTTGCCTGCAGTG...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTCCCCAACCAAAGCTCTaGACAGAGAACCCCCTGCCC +
Preference number: 3 (lower is better)
Translates to: SLGQPPSALLAGSLQASLPQPKL*TENPLP
Trigger: GGGCAGGGGGTTCTCTGTCAAGAGCTTTGGTTGGGG...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTGGCACGTGGTATGTGTaGGCAGGGCTGCTTCTCACC +
Preference number: 3 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSGTWYV*AGLLLT
Trigger: GGTGAGAAGCAGCCCTGCCAACACATACCACGTGCC...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 72 bp CGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTaGTCTTGCCTGCGACGTGGAAATGATGCCTGCCTG +
Preference number: 3 (lower is better)
Translates to: RPSSRVTAGKPW*SCLRRGNDACL
Trigger: CAGGCAGGCATCATTTCCACGTCGCAGGCAAGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp TCCATGAAGTCTGAGCGTGTGGGTAAGGGCCAGCCCTaGCTGCTGCTTCCTCAGCTGGAAGGACCCTCCCCA +
Preference number: 3 (lower is better)
Translates to: SMKSERVGKGQP*LLLPQLEGPSP
Trigger: TGGGGAGGGTCCTTCCAGCTGAGGAAGCAGCAGCCAGGGCTGGCCCTTACCCACACGCTCAGACTTCATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp AGAGCGGGCGAGGGGCATAGGGAAGTCACTGGCACGTaGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAAC +
Preference number: 3 (lower is better)
Translates to: RAGEGHREVTGT*YVLAGLLLTPN
Trigger: GTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCCTATGCCCCTCGCCCGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGTCTTACTGCTGTCCCTaGTCACTGGGTGACTCCACC +
Preference number: 3 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRSYCCP*SLGDST
Trigger: GGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGA...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 72 bp AGGCAAGCCTTGGTGCTCTTGCCTGCGACGTGGAAATaGTGCCTGCCTGCAGCGCTGTATAGTGCAGAGCGG +
Preference number: 3 (lower is better)
Translates to: RQALVLLPATWK*CLPAALYSAER
Trigger: CCGCTCTGCACTATACAGCGCTGCAGGCAGGCATCATTTCCACGTCGCAGGCAAGAGCACCAAGGCTTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCAGCCTTCTTCAGGGGTaGAGCCCAGTCTACCGAGTC +
Preference number: 3 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSLLQG*SPVYRV
Trigger: GACTCGGTAGACTGGGCTCAACCCCTGAAGAAGGCT...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 72 bp AGCCTCTCTCCACTGCCCAATGCCATGACTGCTCCCTaGCCTAGGAGATCTGTGGACCATGACTGTCCAGTC +
Preference number: 3 (lower is better)
Translates to: SLSPLPNAMTAP*PRRSVDHDCPV
Trigger: GACTGGACAGTCATGGTCCACAGATCTCCTAGGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAGAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp AACATGGAATCAAGGCAGAATCAAGGAGATCTGGAGTaGCCCGAGGGCCCTGACTGCAGCCTAGGGCTCATC +
Preference number: 3 (lower is better)
Translates to: NMESRQNQGDLE*PEGPDCSLGLI
Trigger: GATGAGCCCTAGGCTGCAGTCAGGGCCCTCGGGCCACTCCAGATCTCCTTGATTCTGCCTTGATTCCATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp CCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTaGGTGACTCCACCCCTGGAATCCAGTACCCCTTGG +
Preference number: 3 (lower is better)
Translates to: PISDSLTAVPCH*VTPPLESSTPW
Trigger: CCAAGGGGTACTGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp TTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTaGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGC +
Preference number: 3 (lower is better)
Translates to: FLHTLIQPTCVV*ESGTTSVRPSS
Trigger: GCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 72 bp TTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTaGCTCCACCCCTGGAATCCAGTACCCCTTGGTTCC +
Preference number: 3 (lower is better)
Translates to: FRTLLLLSLVTG*LHPWNPVPLGS
Trigger: GGAACCAAGGGGTACTGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR-3UTR CAA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGGCTTTCCAAATCAGCTaGGAGAGACAGGCTGACTCC +
Preference number: 3 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMAFQIS*ERQADS
Trigger: GGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGC...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 72 bp TCAGTTCTGGGTTCCTGGCATTTCAGGGGCACCCACTaGGAGGCAAGACAGCCTCAGGGAAACATGGAATCA +
Preference number: 3 (lower is better)
Translates to: SVLGSWHFRGTH*EARQPQGNMES
Trigger: TGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAATGCCAGGAACCCAGAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CCA 72 bp GCACCCACTGAGAGGCAAGACAGCCTCAGGGAAACATaGAATCAAGGCAGAATCAAGGAGATCTGGAGTGGC +
Preference number: 3 (lower is better)
Translates to: APTERQDSLRET*NQGRIKEIWSG
Trigger: GCCACTCCAGATCTCCTTGATTCTGCCTTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 72 bp CCTTGGTTCCCAACTAGGACTGTTTTCCCTCAGTGTTaGTCTAAGCAGCCTCTCTCCACTGCCCAATGCCAT +
Preference number: 3 (lower is better)
Translates to: PWFPTRTVFPQC*SKQPLSTAQCH
Trigger: ATGGCATTGGGCAGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAACCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR GCA 72 bp CACACACCCACACACCCACACATACACTTACACGCATaGACACACTGCTTTCCAAATCAGCTTGGAGAGACA +
Preference number: 3 (lower is better)
Translates to: HTPTHPHIHLHA*THCFPNQLGET
Trigger: TGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTGTAAGTGTATGTGTGGGTGTGTGGGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR TCA 72 bp AGTACAAACCAGTTTTCTGTAGACTCTCCCTCCGTTTaGGCTTATCTGACATTTGCTCGCCGTGAGATCCAG +
Preference number: 3 (lower is better)
Translates to: STNQFSVDSPSV*AYLTFARREIQ
Trigger: CTGGATCTCACGGCGAGCAAATGTCAGATAAGCTCAAACGGAGGGAGAGTCTACAGAAAACTGGTTTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGTGGCCCGAGGGCCCTaGCTGCAGCCTAGGGCTCAT +
Preference number: 4 (lower is better)
Translates to: SLGQPPSALLAGSLQASLVARGP*LQPRAH
Trigger: ATGAGCCCTAGGCTGCAGTCAGGGCCCTCGGGCCAC...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTCCTGGAGCTGTCAGGTaGGAGGCAGAGGGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSPGAVR*EAEGGR
Trigger: TCTCCCGCCCTCTGCCTCCCACCTGACAGCTCCAGG...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGCTGCACGGGCTCGGATaGCGCTTCCTGCCGCTTGTT +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRLHGLG*RFLPLV
Trigger: AACAAGCGGCAGGAAGCGTCATCCGAGCCCGTGCAG...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGCCTGCGACGTGGAAATaGTGCCTGCCTGCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRPATWK*CLPAAL
Trigger: CAGCGCTGCAGGCAGGCATCATTTCCACGTCGCAGG...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGCCACTCGAGCCAGATaGTTGTTGTGCGGCGGAGGC +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRATRAR*LLCGGG
Trigger: GCCTCCGCCGCACAACAAGCATCTGGCTCGAGTGGC...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGCCAGCCCTGGCTGCTaGTTCCTCAGCTGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRASPGC*FLSWKD
Trigger: GTCCTTCCAGCTGAGGAAGCAGCAGCCAGGGCTGGC...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTTGGGACGCTCTTGGCTaGGCCCATCTCAACCAGGAG +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSWDALG*AHLNQE
Trigger: CTCCTGGTTGAGATGGGCTCAGCCAAGAGCGTCCCA...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTGGCTTGTCGGAGCTCTaGCTGGCCACAGGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSGLSEL*LATGVS
Trigger: AGAAACCCCTGTGGCCAGCCAGAGCTCCGACAAGCC...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTCTGACGGGATGGCTGTaGCCACAGGTTCCTGGGACA +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSLTGWL*PQVPGT
Trigger: TGTCCCAGGAACCTGTGGCCACAGCCATCCCGTCAG...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGTCGGATGACGCTTCCTaGCGCTTGTTTGACCTGCGG +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRSDDAS*RLFDLR
Trigger: CCGCAGGTCAAACAAGCGGCAGGAAGCGTCATCCGA...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GTTGCTCTAAGCAGCCTCTCTCCACTGCCCAATGCCATGACTGCTCCCTGCCCTCAAGGAGATCTGGAGTaGCCCGAGGGCCCTGACTGC +
Preference number: 4 (lower is better)
Translates to: VALSSLSPLPNAMTAPCPQGDLE*PEGPDC
Trigger: GCAGTCAGGGCCCTCGGGCCACTCCAGATCTCCTTG...AGGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAGAGGCTGCTTAGAGCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTGCACGTGGTATGTGTTaGCAGGGCTGCTTCTCACCC +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSARGMC*QGCFSP
Trigger: GGGTGAGAAGCAGCCCTGCCAACACATACCACGTGC...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTGAGGCCGCGCTGGTGTaGCTGGGACGCTCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTEAALV*LGRSWL
Trigger: CAGCCAAGAGCGTCCCAGTCACACCAGCGCGGCCTC...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTAGGAGAGCGGGGATCTaGGTCCTGGGCATGTTTAAG +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSRRAGI*VLGMFK
Trigger: CTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCT...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCTCTCCACTGCCCAATaGCATGACTGCTCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTLSTAQ*HDCSLP
Trigger: GGGCAGGGAGCAGTCATGGCATTGGGCAGTGGAGAG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCACGAGAGCATCATCTaGGGCATCACGTCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTHESII*GITSVA
Trigger: GGCCACGGACGTGATGCCGCAGATGATGCTCTCGTG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTGACCAGGAGCTGATCTaGTTCTCCCACGAGAGCATC +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSDQELI*FSHESI
Trigger: GATGCTCTCGTGGGAGAAGCAGATCAGCTCCTGGTC...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTCGGCGGAGGCCGCGCTaGTGTGACTGGGACGCTCTT +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTRRRPR*CDWDAL
Trigger: AAGAGCGTCCCAGTCACACCAGCGCGGCCTCCGCCG...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTCCCCAATTCCACCTCTaGATGCACAACAGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSPQFHL*MHNSSW
Trigger: CCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGG...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CAA 72 bp GAGGGGCATAGGGAAGTCACTGGCACGTGGTATGTGTaGGCAGGGCTGCTTCTCACCCCAAACCAAGGGAGG +
Preference number: 4 (lower is better)
Translates to: EGHREVTGTWYV*AGLLLTPNQGR
Trigger: CCTCCCTTGGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCCTATGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCTCCCTTGTCACTGGGTaGCTCCACCCCTGGAATCCA +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSLVTG*LHPWNP
Trigger: TGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGA...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCGCCATGACTGCTCCCTaGCCTAGGAGATCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTAMTAP*PRRSVD
Trigger: GTCCACAGATCTCCTAGGGCAGGGAGCAGTCATGGC...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCGCTGTCCCTTGTCACTaGGTGACTCCACCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTAVPCH*VTPPLE
Trigger: TTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGC...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTAGCAGCGGCTTGCCCTaGAGCTGTCAGGTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESSSGLP*SCQVGG
Trigger: GCCTCCCACCTGACAGCTCCAGGGCAAGCCGCTGCT...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCTTGGAGAGACAGGCTaGCTCCTTTCCCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTLGETG*LLSLFL
Trigger: GAGGAAGAGGGAAAGGAGTCAGCCTGTCTCTCCAAG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGGGAGAGCTCTCCACCTaGATGGGAGTGCGCAGGATG +
Preference number: 4 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMGELST*MGVRRM
Trigger: CATCCTGCGCACTCCCATCCAGGTGGAGAGCTCTCC...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CAA 72 bp CTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTaGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCG +
Preference number: 4 (lower is better)
Translates to: LDPVLTHPDPAH*CSLGVWDNLRP
Trigger: CGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGATGCCAGCACTAGGTaGACGGGGGTCCGCCACTCG +
Preference number: 4 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLDASTR*TGVRHS
Trigger: CGAGTGGCGGACCCCCGTTCACCTAGTGCTGGCATC...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCATGTCTGGGACTCCATaGAGTCTGAGCGTGTGGGTA +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTMSGTP*SLSVWV
Trigger: TACCCACACGCTCAGACTTCATGGAGTCCCAGACAT...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTTTCCTGCCGCTTGTTTaGCCTGCGGGCAGACCAGGA +
Preference number: 4 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESFLPLV*PAGRPG
Trigger: TCCTGGTCTGCCCGCAGGTCAAACAAGCGGCAGGAA...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGCCCAGGTCTGATCCCTaGCCCACTTGCCACCCGTGC +
Preference number: 4 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLPRSDP*PTCHPC
Trigger: GCACGGGTGGCAAGTGGGTCAGGGATCAGACCTGGG...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTGCCAGATGCTTGTTGTaGGGCGGAGGCCGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTARCLL*GGGRAG
Trigger: ACCAGCGCGGCCTCCGCCGCACAACAAGCATCTGGC...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCTTGGTGCTCTTGCCTaGGACGTGGAAATGATGCCT +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTLGALA*DVEMMP
Trigger: AGGCATCATTTCCACGTCGCAGGCAAGAGCACCAAG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTAGCTCTCCACCTGGATaGGAGTGCGCAGGATGCCAG +
Preference number: 4 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESSSPPG*ECAGCQ
Trigger: CTGGCATCCTGCGCACTCCCATCCAGGTGGAGAGCT...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp AGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGCCTTGCATTTGTACTaGACCCTGTTCTTACACACC +
Preference number: 4 (lower is better)
Translates to: SLGQPPSALLAGSLQASLALHLY*TLFLHT
Trigger: GGTGTGTAAGAACAGGGTCCAGTACAAATGCAAGGC...AAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGCTTCATAGGTGTCCGTaGAATACCAAGAGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRLHRCP*NTKSRR
Trigger: TCTCCTACTCTTGGTATTGCACGGACACCTATGAAG...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTAATGGAGAGGCCATCTaGACGGGCTCGGATGACGCT +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTNGEAI*TGSDDA
Trigger: AGCGTCATCCGAGCCCGTGCAGATGGCCTCTCCATT...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTCTGAGAGCAGCGGCTTaGCCTGGAGCTGTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTLRAAA*PGAVRW
Trigger: CCACCTGACAGCTCCAGGGCAAGCCGCTGCTCTCAG...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCTCCTCAACAGATAACTaGGTACCCAGAGGCAAGTCC +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSSTDN*VPRGKS
Trigger: GGACTTGCCTCTGGGTACCCAGTTATCTGTTGAGGA...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTTCACAGCTGACGGGATaGCTGTGGCCACAGGTTCCT +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTSQLTG*LWPQVP
Trigger: AGGAACCTGTGGCCACAGCCATCCCGTCAGCTGTGA...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTAGAATCAAGGAGATCTaGAGTGGCCCGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESRIKEI*SGPRAL
Trigger: CAGGGCCCTCGGGCCACTCCAGATCTCCTTGATTCT...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp ATTTCAGGGGCACCCACTGAGAGGCAAGACAGCCTCAGGGAAACATGGAATCAAGCCTTCTTCAGGGGTTaGGCCCAGTCTACCGAGTCT +
Preference number: 4 (lower is better)
Translates to: ISGAPTERQDSLRETWNQAFFRG*AQSTES
Trigger: AGACTCGGTAGACTGGGCTCAACCCCTGAAGAAGGC...TTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTTTCAGGGGCACCCACTaGGAGGCAAGACAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTFRGTH*EARQPQ
Trigger: CTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAA...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTGATAACAGGGTGAGCTaGCTGGGAGTCACAGCTGAC +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTDNRVS*LGVTAD
Trigger: GTCAGCTGTGACTCCCAGGCAGCTCACCCTGTTATC...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGGAGGGGAACTCAGTCTaGTTCCAAGGTGGCATCTGT +
Preference number: 4 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMEGNSV*FQGGIC
Trigger: ACAGATGCCACCTTGGAACCAGACTGAGTTCCCCTC...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCTTTCCAAATCAGCTTaGAGAGACAGGCTGACTCCT +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTLSKSA*RDRLTP
Trigger: AGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTTCAGTTCTGGGTTCCTaGCATTTCAGGGGCACCCAC +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTSVLGS*HFRGTH
Trigger: GTGGGTGCCCCTGAAATGCCAGGAACCCAGAACTGA...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTGGCCTTCTCCCTCAGTaGCCGCCTACTATTCGCTGG +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTGLLPQ*PPTIRW
Trigger: CCAGCGAATAGTAGGCGGCCACTGAGGGAGAAGGCC...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ATTTCAGGGGCACCCACTGAGAGGCAAGACAGCCTCAGGGAAACATGGAATCAAACTGCAGGCAAGCCTTaGTGCTCTTGCCTGCGACGT +
Preference number: 4 (lower is better)
Translates to: ISGAPTERQDSLRETWNQTAGKP*CSCLRR
Trigger: ACGTCGCAGGCAAGAGCACCAAGGCTTGCCTGCAGT...TTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGTGTAGTCTGGGAGTCTaGGACAACCTCCGTCCGCCC +
Preference number: 4 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLCSLGV*DNLRPP
Trigger: GGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACA...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CAA 72 bp ATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTaGTCACTGGGTGACTCCACCCCTGGAATCCAGTAC +
Preference number: 4 (lower is better)
Translates to: ISSHFGLSYCCP*SLGDSTPGIQY
Trigger: GTACTGGATTCCAGGGGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCCATCTAAGACTAGCCTaGAGTTGGTCAGATAGGATG +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTHLRLA*SWSDRM
Trigger: CATCCTATCTGACCAACTTCAGGCTAGTCTTAGATG...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGAATTCCACCTCTGGATaGACAACAGCTCGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMNSTSG*TTARGS
Trigger: TGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATT...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCAGCCTCAGGGAAACATaGAATCAAGGCAGAATCAAG +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSLRET*NQGRIK
Trigger: CTTGATTCTGCCTTGATTCCATGTTTCCCTGAGGCT...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
3UTR CAA 72 bp CTGACATTTGCTCGCCGTGAGATCCAGGCCTTGCATTaGTACTGGACCCTGTTCTTACACACCCTGATCCAG +
Preference number: 4 (lower is better)
Translates to: LTFARREIQALH*YWTLFLHTLIQ
Trigger: CTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAATGCAAGGCCTGGATCTCACGGCGAGCAAATGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGGGGACGAGGAGGGAATaGCGGGCCCCAATTCCACCT +
Preference number: 4 (lower is better)
Translates to: DRMASSLSRGQVLMKITLGTRRE*RAPIPP
Trigger: AGGTGGAATTGGGGCCCGGCATTCCCTCCTCGTCCC...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGAGTCTGGTTCCAAGGTaGCATCTGTTCCTCAACAGA +
Preference number: 4 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMSLVPR*HLFLNR
Trigger: TCTGTTGAGGAACAGATGCCACCTTGGAACCAGACT...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCTGCTGCTTCCTCAGCTaGAAGGACCCTCCCCAGCCC +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLCCFLS*KDPPQP
Trigger: GGGCTGGGGAGGGTCCTTCCAGCTGAGGAAGCAGCA...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTGAAGTCACTGGCACGTaGTATGTGTTGGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTEVTGT*YVLAGL
Trigger: CAGCCCTGCCAACACATACCACGTGCCAGTGACTTC...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCAGCAAAGAAATAGGATaGACGGTTGCCTTCTCTTTT +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSKEIG*TVAFSF
Trigger: AAAAGAGAAGGCAACCGTTCATCCTATTTCTTTGCT...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp AATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTGCACTGCCCAATGCCATaGCTGCTCCCTGCCCTAGGA +
Preference number: 4 (lower is better)
Translates to: NNTGQGQNPNPNSVAHFLHCPMP*LLPALG
Trigger: TCCTAGGGCAGGGAGCAGTCATGGCATTGGGCAGTG...CAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGGGGCAGACCAGGAGCTaGTCTGCTTCTCCCACGAGA +
Preference number: 4 (lower is better)
Translates to: DRMASSLSRGQVLMKITLGQTRS*SASPTR
Trigger: TCTCGTGGGAGAAGCAGATCAGCTCCTGGTCTGCCC...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGATCTCAACCAGGAGTTaGAGGGTGGGGGCAAGGGCC +
Preference number: 4 (lower is better)
Translates to: DRMASSLSRGQVLMKITLISTRS*RVGARA
Trigger: GGCCCTTGCCCCCACCCTGCAACTCCTGGTTGAGAT...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTATGTGTTGGCAGGGCTaGTTCTCACCCCAAACCAAG +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTMCWQG*FSPQTK
Trigger: CTTGGTTTGGGGTGAGAAGCAGCCCTGCCAACACAT...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CCATCAGCTCCCATTTCGGACTCTCTTACTGCTGTCCCTTGTCACTGGGTGACTCAAGTCACTCCTCCATaGGCCTCAGTTTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: PSAPISDSLTAVPCHWVTQVTPP*ASVSSS
Trigger: AGATGAAGAAACTGAGGCCCATGGAGGAGTGACTTG...AGTCACCCAGTGACAAGGGACAGCAGTAAGAGAGTCCGAAATGGGAGCTGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCTCACCACCTTTAAACTaGAACTGTTTTCCCACCTTT +
Preference number: 4 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTSPPLN*NCFPTF
Trigger: AAAGGTGGGAAAACAGTTCCAGTTTAAAGGTGGTGA...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTCCTGGGAGTCACAGCTaGCGGGATGGCTGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFPGSHS*RDGCGH
Trigger: GTGGCCACAGCCATCCCGTCAGCTGTGACTCCCAGG...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGAAGCCTTGGTGCTCTTaGCTGCGACGTGGAAATGAT +
Preference number: 4 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLKPWCS*LRRGND
Trigger: ATCATTTCCACGTCGCAGGCAAGAGCACCAAGGCTT...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGCGGCATCACGTCCGTaGCCTTCTCCCTCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFAASRP*PSPSVA
Trigger: GGCCACTGAGGGAGAAGGCCACGGACGTGATGCCGC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTCTCTGGGGGAAGATTTaGTTTAGAGTCTTCAGTTTC +
Preference number: 4 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESLWGKI*FRVFSF
Trigger: GAAACTGAAGACTCTAAATCAAATCTTCCCCCAGAG...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTCACGCATGCACACACTaGTTTCCAAATCAGCTTGGA +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTHACTH*FPNQLG
Trigger: TCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTG...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGCCCACTTGTGTAGTCTaGGAGTCTGGGACAACCTCC +
Preference number: 4 (lower is better)
Translates to: DRMASSLSRGQVLMKITLPTCVV*ESGTTS
Trigger: GGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGCCACGATAACAGGGTaGGCTGCCTGGGAGTCACAG +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFATITG*AAWESQ
Trigger: CTGTGACTCCCAGGCAGCTCACCCTGTTATCGTGGC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR TCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCGAGATCTGTGGACCATaGCTGTCCAGTCAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLEICGP*LSSQFW
Trigger: CCAGAACTGACTGGACAGTCATGGTCCACAGATCTC...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp GATAGGATGGCTTCTTCTCTATCAAGAGGCCAGGTGCTGATGAAAATAACACTGCTGTCCAGTCAGTTCTaGGTTCCTGGCATTTCAGGG +
Preference number: 4 (lower is better)
Translates to: DRMASSLSRGQVLMKITLLSSQF*VPGISG
Trigger: CCCTGAAATGCCAGGAACCCAGAACTGACTGGACAG...CAGTGTTATTTTCATCAGCACCTGGCCTCTTGATAGAGAAGAAGCCATCCTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCGCCCTAGGAGATCTGTaGACCATGACTGTCCAGTCA +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLALGDL*TMTVQS
Trigger: TGACTGGACAGTCATGGTCCACAGATCTCCTAGGGC...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTTTCATAGTACACAGATaGTTCCAGCCTTTCTCTGTC +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTFIVHR*FQPFSV
Trigger: GACAGAGAAAGGCTGGAAGCATCTGTGTACTATGAA...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTTTTCACCAGTGGGCTTaGGGGGTCTCCACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFFHQWA*GVSTAG
Trigger: ACCAGCAGTGGAGACCCCCCAAGCCCACTGGTGAAA...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTTTAAGACCCTCCAGTTaGTCCCCTGCTGGTAGGCCT +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFLRPSS*SPAGRP
Trigger: AGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAA...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTATACACTTACACGCATaGACACACTGCTTTCCAAAT +
Preference number: 4 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTIHLHA*THCFPN
Trigger: ATTTGGAAAGCAGTGTGTGCATGCGTGTAAGTGTAT...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp AATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTGTCTAGGATCCCTGCATaGATGTGCTCAAGCACACAT +
Preference number: 4 (lower is better)
Translates to: NNTGQGQNPNPNSVAHFLSRIPA*MCSSTH
Trigger: ATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGA...CAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCCTTTCTGAGTGTCCTTaGACAAGTCACTCCTCCATG +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLLSECP*TSHSSM
Trigger: CATGGAGGAGTGACTTGTGCAAGGACACTCAGAAAG...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCTGGAAAACACCTGTTTaGAGGGGAACTCAGTCTGGT +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLWKTPV*RGTQSG
Trigger: ACCAGACTGAGTTCCCCTCCAAACAGGTGTTTTCCA...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTTCAGTTCTTCCCCAATaGAGAGGCCATCTGCACGGG +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFSVLPQ*RGHLHG
Trigger: CCCGTGCAGATGGCCTCTCCATTGGGGAAGAACTGA...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CCA 90 bp CTGATGAAAATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCGTTGGTCAGATAGGATaGCTTCTTCTCTATCAAGAG +
Preference number: 4 (lower is better)
Translates to: LMKITLARGRIQILILLLVGQIG*LLLYQE
Trigger: CTCTTGATAGAGAAGAAGCCATCCTATCTGACCAAC...GAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATTTTCATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR GCA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTAATAGGATGAACGGTTaGCTTCTCTTTTCCAGCACC +
Preference number: 4 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFNRMNG*LLFSST
Trigger: GGTGCTGGAAAAGAGAAGGCAACCGTTCATCCTATT...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS TCA 90 bp GGCCCAGAGTACCTGGATGGGAGTGCGCAGGATGCCAGCACTAGGTaGACGGGGGTCCGCCACTCGAGCCAGATGCTTGTTGTGCGGCGG +
Preference number: 5 (lower is better)
Translates to: GPEYLDGSAQDASTR*TGVRHSSQMLVVRR
Trigger: CCGCCGCACAACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTACTCTGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS TCA 90 bp AGAGCTCTCCACCTGGATGGGAGTGCGCAGGATGCCAGCACTAGGTaGACGGGGGTCCGCCACTCGAGCCAGATGCTTGTTGTGCGGCGG +
Preference number: 5 (lower is better)
Translates to: RALHLDGSAQDASTR*TGVRHSSQMLVVRR
Trigger: CCGCCGCACAACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTGGAGAGCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000538862.7
ENST00000540683.1
CDS GCA 90 bp GGAGAGCGGGGATCTGAGTCCTGGGCATGTTTAAGACCCTCCAGTTaGTCCCCTGCTGGTAGGCCTGGCTGTGGAGAGCTCTCCACCGGG +
Preference number: 5 (lower is better)
Translates to: GERGSESWACLRPSS*SPAGRPGCGELSTG
Trigger: CCCGGTGGAGAGCTCTCCACAGCCAGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545368.5
CDS-3UTR CAA 90 bp CCCACTTGTGTAGTCTGGGAGTCTGGGACAACCTCCGTCCGCCCTTCTAGCCGGGACGCTTCCTGCCGCTaGTTTGACCTGCGGGCAGAC +
Preference number: 5 (lower is better)
Translates to: PTCVVWESGTTSVRPSSRDASCR*FDLRAD
Trigger: GTCTGCCCGCAGGTCAAACAAGCGGCAGGAAGCGTC...CCGGCTAGAAGGGCGGACGGAGGTTGTCCCAGACTCCCAGACTACACAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS GCA 90 bp GGAGAGCGGGGATCTGAGTCCTGGGCATGTTTAAGACCCTCCAGTTaGTCCCCTGCTGGTAGGCCTGGCTGTGGAGAGCTCTCCACCTGG +
Preference number: 5 (lower is better)
Translates to: GERGSESWACLRPSS*SPAGRPGCGELSTW
Trigger: CCAGGTGGAGAGCTCTCCACAGCCAGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000538862.7
ENST00000540683.1
CDS TCA 90 bp GGGGCAAGGGCCAGCCCGGGACGAGGAGGGAATGCCTGTGAGAAGTaGCTCAGGTCTCAGCCCTTATCTCTTCCACGTCGGACCTTCAAC +
Preference number: 5 (lower is better)
Translates to: GARASPGRGGNACEK*LRSQPLSLPRRTFN
Trigger: GTTGAAGGTCCGACGTGGAAGAGATAAGGGCTGAGACCTGAGTCACTTCTCACAGGCATTCCCTCCTCGTCCCGGGCTGGCCCTTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000535406.5
CDS GCA 90 bp GGAGAGCGGGGATCTGAGTCCTGGGCATGTTTAAGACCCTCCAGTTaGTCCCCTGCTGGTAGGCCTGGCTGTGGAGAGCTCTCCACCTGT +
Preference number: 5 (lower is better)
Translates to: GERGSESWACLRPSS*SPAGRPGCGELSTC
Trigger: ACAGGTGGAGAGCTCTCCACAGCCAGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS GCA 90 bp GCCCGGGACGAGGAGGGAATGCCGGGCCCCAATTCCACCTCTGGATaGACAACAGCTCGTGGCTCAACTCCCGAAGTTACCAGTTTCAAA +
Preference number: 5 (lower is better)
Translates to: ARDEEGMPGPNSTSG*TTARGSTPEVTSFK
Trigger: TTTGAAACTGGTAACTTCGGGAGTTGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGGCCCGGCATTCCCTCCTCGTCCCGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS CCA 90 bp AGAATTCAGACATTCTCTGCCTTTCCCACGCTGGCCCAGAGTACCTaGATGGGAGTGCGCAGGATGCCAGCACTAGGTGAACGGGGGTCC +
Preference number: 5 (lower is better)
Translates to: RIQTFSAFPTLAQST*MGVRRMPALGERGS
Trigger: GGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTACTCTGGGCCAGCGTGGGAAAGGCAGAGAATGTCTGAATTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS-3UTR CAA 90 bp GAGCCCAGTCTACCGAGTCTAGGATCCCTGCATGCATGTGCTCAAGCACACATGCTTCCTGCCGCTTGTTaGACCTGCGGGCAGACCAGG +
Preference number: 5 (lower is better)
Translates to: EPSLPSLGSLHACAQAHMLPAAC*TCGQTR
Trigger: CCTGGTCTGCCCGCAGGTCAAACAAGCGGCAGGAAG...CATGTGTGCTTGAGCACATGCATGCAGGGATCCTAGACTCGGTAGACTGGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTGCTGAGAGCAGCGGCTaGCCCTGGAGCTGTCAGGTG +
Preference number: 5 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESAESSG*PWSCQV
Trigger: CACCTGACAGCTCCAGGGCAAGCCGCTGCTCTCAGC...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS CCA 90 bp GGTGTCCGTGCAATACCAAGAGTAGGAGAGCGGGGATCTGAGTCCTaGGCATGTTTAAGACCCTCCAGTTGCTCCCCTGCTGGTAGGCCT +
Preference number: 5 (lower is better)
Translates to: GVRAIPRVGERGSES*ACLRPSSCSPAGRP
Trigger: AGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCTACTCTTGGTATTGCACGGACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
ENST00000545368.5
CDS CCA 90 bp ACACCCAGGGAGAGCAGGGCCAAGGACAGAGCCATAGGGACACCATaGTTAAAGGGAGATGTGCAAAGAAGGCTCAGAGCATCAGTGGGC +
Preference number: 5 (lower is better)
Translates to: TPRESRAKDRAIGTP*LKGDVQRRLRASVG
Trigger: GCCCACTGATGCTCTGAGCCTTCTTTGCACATCTCCCTTTAACCATGGTGTCCCTATGGCTCTGTCCTTGGCCCTGCTCTCCCTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000604599.1
CDS-3UTR CAA 90 bp GGGAAGTCACTGGCACGTGGTATGTGTTGGCAGGGCTGCTTCTCACCCCAAACCGCTTTCCAAATCAGCTaGGAGAGACAGGCTGACTCC +
Preference number: 5 (lower is better)
Translates to: GKSLARGMCWQGCFSPQTAFQIS*ERQADS
Trigger: GGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGC...GGTTTGGGGTGAGAAGCAGCCCTGCCAACACATACCACGTGCCAGTGACTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp TGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGAGTCTCCCCAACCAAAGCTCTaGACAGAGAACCCCCTGCCC +
Preference number: 5 (lower is better)
Translates to: WTLFLHTLIQPTCVVWESPQPKL*TENPLP
Trigger: GGGCAGGGGGTTCTCTGTCAAGAGCTTTGGTTGGGG...AGACTCCCAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS TCA 90 bp CTTCATAGGTGTCCGTGCAATACCAAGAGTAGGAGAGCGGGGATCTaGGTCCTGGGCATGTTTAAGACCCTCCAGTTGCTCCCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LHRCPCNTKSRRAGI*VLGMFKTLQLLPCW
Trigger: CCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCTACTCTTGGTATTGCACGGACACCTATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
ENST00000545368.5
CDS CCA 90 bp ACCCTAAACCACCCTGTCTTCCCAGTTTCCAGTGAAGAAACTTCCTaGCGAGGGACCAGAGGCCTCTGCGGAGTTAATGACTGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: TLNHPVFPVSSEETS*RGTRGLCGVNDCCS
Trigger: GCTGCAGCAGTCATTAACTCCGCAGAGGCCTCTGGTCCCTCGCCAGGAAGTTTCTTCACTGGAAACTGGGAAGACAGGGTGGTTTAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535406.5
CDS-3UTR CAA 90 bp AATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTGCGAGCCAGATGCTTGTaGTGCGGCGGAGGCCGCGCT +
Preference number: 5 (lower is better)
Translates to: NNTGQGQNPNPNSVAHFLRARCL*CGGGRA
Trigger: AGCGCGGCCTCCGCCGCACAACAAGCATCTGGCTCG...CAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp TTTGTACTGGACCCTGTTCTTACACACCCTGATCCAGCCCACTTGTGTAGTCTGGGCACGTGGTATGTGTaGGCAGGGCTGCTTCTCACC +
Preference number: 5 (lower is better)
Translates to: FVLDPVLTHPDPAHLCSLGTWYV*AGLLLT
Trigger: GGTGAGAAGCAGCCCTGCCAACACATACCACGTGCC...CAGACTACACAAGTGGGCTGGATCAGGGTGTGTAAGAACAGGGTCCAGTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTCCTGATCCAGCCCACTaGTGTAGTCTGGGAGTCTGG +
Preference number: 5 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTPDPAH*CSLGVW
Trigger: CCAGACTCCCAGACTACACAAGTGGGCTGGATCAGG...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS GCA 90 bp TCTCAAAATCAGGTTAGGAAGAGACCCAAGAATTCAGACATTCTCTaGCTTTCCCACGCTGGCCCAGAGTACCTGGATGGGAGTGCGCAG +
Preference number: 5 (lower is better)
Translates to: SQNQVRKRPKNSDIL*LSHAGPEYLDGSAQ
Trigger: CTGCGCACTCCCATCCAGGTACTCTGGGCCAGCGTGGGAAAGGCAGAGAATGTCTGAATTCTTGGGTCTCTTCCTAACCTGATTTTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS CCA 90 bp GGACCCTACCCAAGAATAATAGATGACAGCTTCATCAGCATTCCCTaGGCCCAACGCTTACCTCCACTGCTGGTCTTCATAGGTGTCCGT +
Preference number: 5 (lower is better)
Translates to: GPYPRIIDDSFISIP*AQRLPPLLVFIGVR
Trigger: ACGGACACCTATGAAGACCAGCAGTGGAGGTAAGCGTTGGGCCCAGGGAATGCTGATGAAGCTGTCATCTATTATTCTTGGGTAGGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS-3UTR CAA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTTCTTACTGCTGTCCCTaGTCACTGGGTGACTCCACC +
Preference number: 5 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTSYCCP*SLGDST
Trigger: GGTGGAGTCACCCAGTGACAAGGGACAGCAGTAAGA...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp ACAACCTCCGTCCGCCCTTCTAGCCGGGTCACTGCAGGCAAGCCTTGGTGCTCTTTCTTTCTGTGTCTTTaGAAAGTAGGTTGCAGACAT +
Preference number: 5 (lower is better)
Translates to: TTSVRPSSRVTAGKPWCSFFLCL*KVGCRH
Trigger: ATGTCTGCAACCTACTTTCAAAAGACACAGAAAGAA...AGAGCACCAAGGCTTGCCTGCAGTGACCCGGCTAGAAGGGCGGACGGAGGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS TCA 90 bp AACCCTGAGAGAATGGCTTCATGGACCCTACCCAAGAATAATAGATaGCAGCTTCATCAGCATTCCCTGGGCCCAACGCTTACCTCCACT +
Preference number: 5 (lower is better)
Translates to: NPERMASWTLPKNNR*QLHQHSLGPTLTST
Trigger: AGTGGAGGTAAGCGTTGGGCCCAGGGAATGCTGATGAAGCTGTCATCTATTATTCTTGGGTAGGGTCCATGAAGCCATTCTCTCAGGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS CCA 90 bp CTCAGTTTCTTCATACGCATGCACACACTGCTTTCCAAATCAGCTTaGAGAGACAGGCTGACTCCTTTCCCTCTTCCTCAGGCATCCTCT +
Preference number: 5 (lower is better)
Translates to: LSFFIRMHTLLSKSA*RDRLTPFPLPQASS
Trigger: AGAGGATGCCTGAGGAAGAGGGAAAGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTATGAAGAAACTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS-3UTR CAA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTTTGGAAAACACCTGTTaGGAGGGGAACTCAGTCTGG +
Preference number: 5 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTLENTC*EGNSVW
Trigger: CCAGACTGAGTTCCCCTCCAAACAGGTGTTTTCCAA...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTCACTGCAGGCAAGCCTaGGTGCTCTTGCCTGCGACG +
Preference number: 5 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFHCRQA*VLLPAT
Trigger: CGTCGCAGGCAAGAGCACCAAGGCTTGCCTGCAGTG...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp AATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTGCGTGAGATCCAGGCCTaGCATTTGTACTGGACCCTG +
Preference number: 5 (lower is better)
Translates to: NNTGQGQNPNPNSVAHFLREIQA*HLYWTL
Trigger: CAGGGTCCAGTACAAATGCAAGGCCTGGATCTCACG...CAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS CCA 90 bp AACTCAGTCTGGTTCCAAGGTGGCATCTGTTCCTCAACAGATAACTaGGTACCCAGAGGCAAGTCCAATTCAGAAGATAAAGGTGCCTCT +
Preference number: 5 (lower is better)
Translates to: NSVWFQGGICSSTDN*VPRGKSNSEDKGAS
Trigger: AGAGGCACCTTTATCTTCTGAATTGGACTTGCCTCTGGGTACCCAGTTATCTGTTGAGGAACAGATGCCACCTTGGAACCAGACTGAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000535406.5
ENST00000535871.1
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
ENST00000544610.1
ENST00000545368.5
CDS CCA 90 bp TCTGTTGCTCACTTTCTGAGTGTCCTTGCACAAGTCACTCCTCCATaGGCCTCAGTTTCTTCATACGCATGCACACACTGCTTTCCAAAT +
Preference number: 5 (lower is better)
Translates to: SVAHFLSVLAQVTPP*ASVSSYACTHCFPN
Trigger: ATTTGGAAAGCAGTGTGTGCATGCGTATGAAGAAACTGAGGCCCATGGAGGAGTGACTTGTGCAAGGACACTCAGAAAGTGAGCAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS-3UTR CAA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTGTGACTGGGACGCTCTaGGCTGAGCCCATCTCAACC +
Preference number: 5 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFVTGTL*AEPIST
Trigger: GGTTGAGATGGGCTCAGCCAAGAGCGTCCCAGTCAC...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp ATTACCTTTCCTCGCCATATCTTTTTCGTCACCACCTTTAAACTGGAACTGTTTAGCCTTCTTCAGGGGTaGAGCCCAGTCTACCGAGTC +
Preference number: 5 (lower is better)
Translates to: ITFPRHIFFVTTFKLELFSLLQG*SPVYRV
Trigger: GACTCGGTAGACTGGGCTCAACCCCTGAAGAAGGCT...AAACAGTTCCAGTTTAAAGGTGGTGACGAAAAAGATATGGCGAGGAAAGGTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp ATTTCAGGGGCACCCACTGAGAGGCAAGACAGCCTCAGGGAAACATGGAATCAAACTGTTTTCCCACCTTaGTCTTTTATGTCATTGACG +
Preference number: 5 (lower is better)
Translates to: ISGAPTERQDSLRETWNQTVFPP*SFMSLT
Trigger: CGTCAATGACATAAAAGACAAAGGTGGGAAAACAGT...TTGATTCCATGTTTCCCTGAGGCTGTCTTGCCTCTCAGTGGGTGCCCCTGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp AATAACACTGGCCAGGGGCAGAATCCAAATCCTAATTCTGTTGCTCACTTTCTGATCCAGGCCTTGCATTaGTACTGGACCCTGTTCTTA +
Preference number: 5 (lower is better)
Translates to: NNTGQGQNPNPNSVAHFLIQALH*YWTLFL
Trigger: TAAGAACAGGGTCCAGTACAAATGCAAGGCCTGGAT...CAGAAAGTGAGCAACAGAATTAGGATTTGGATTCTGCCCCTGGCCAGTGTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS-3UTR CAA 90 bp TTCCCAACTAGGACTGTTTTCCCTCAGTGTTGCTCTAAGCAGCCTCTCTCCACTTCAGGAAACTCAACATaGACACAATACTACAGTCTA +
Preference number: 5 (lower is better)
Translates to: FPTRTVFPQCCSKQPLSTSGNST*TQYYSL
Trigger: TAGACTGTAGTATTGTGTCAATGTTGAGTTTCCTGA...AGTGGAGAGAGGCTGCTTAGAGCAACACTGAGGGAAAACAGTCCTAGTTGGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422785.7
CDS CCA 90 bp GACCCAAAACTAGGACTTACAGTTTATTCCTCCCACACTCACCCATaGACCTTATCCCAAAACATTATCCTAGTTTATCTTCCCTGCATC +
Preference number: 5 (lower is better)
Translates to: DPKLGLTVYSSHTHP*TLSQNIILVYLPCI
Trigger: GATGCAGGGAAGATAAACTAGGATAATGTTTTGGGATAAGGTCCATGGGTGAGTGTGGGAGGAATAAACTGTAAGTCCTAGTTTTGGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS CAA 72 bp GGTGAACGGGGGTCCGCCACTCGAGCCAGATGCTTGTaGTGCGGCGGAGGCCGCGCTGGTGTGACTGGGACG +
Preference number: 6 (lower is better)
Translates to: GERGSATRARCL*CGGGRAGVTGT
Trigger: CGTCCCAGTCACACCAGCGCGGCCTCCGCCGCACAACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
CDS CAA 72 bp CTAGGTGAACGGGGGTCCGCCACTCGAGCCAGATGCTaGTTGTGCGGCGGAGGCCGCGCTGGTGTGACTGGG +
Preference number: 6 (lower is better)
Translates to: LGERGSATRARC*LCGGGRAGVTG
Trigger: CCCAGTCACACCAGCGCGGCCTCCGCCGCACAACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
CDS GCA 72 bp GCACTAGGTGAACGGGGGTCCGCCACTCGAGCCAGATaGTTGTTGTGCGGCGGAGGCCGCGCTGGTGTGACT +
Preference number: 6 (lower is better)
Translates to: ALGERGSATRAR*LLCGGGRAGVT
Trigger: AGTCACACCAGCGCGGCCTCCGCCGCACAACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
CDS TCA 72 bp CACCTGGATGGGAGTGCGCAGGATGCCAGCACTAGGTaGACGGGGGTCCGCCACTCGAGCCAGATGCTTGTT +
Preference number: 6 (lower is better)
Translates to: HLDGSAQDASTR*TGVRHSSQMLV
Trigger: AACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000538862.7
ENST00000540683.1
CDS TCA 72 bp CTTCCTCAGGCATCCTCTCTGGCCACGATAACAGGGTaGGCTGCCTGGGAGTCACAGCTGACGGGATGGCTG +
Preference number: 6 (lower is better)
Translates to: LPQASSLATITG*AAWESQLTGWL
Trigger: CAGCCATCCCGTCAGCTGTGACTCCCAGGCAGCTCACCCTGTTATCGTGGCCAGAGAGGATGCCTGAGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000422785.7
ENST00000603043.1
ENST00000604599.1
CDS TCA 72 bp TACCTGGATGGGAGTGCGCAGGATGCCAGCACTAGGTaGACGGGGGTCCGCCACTCGAGCCAGATGCTTGTT +
Preference number: 6 (lower is better)
Translates to: YLDGSAQDASTR*TGVRHSSQMLV
Trigger: AACAAGCATCTGGCTCGAGTGGCGGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS TCA 72 bp GCCAGCCCGGGACGAGGAGGGAATGCCTGTGAGAAGTaGCTCAGGTCTCAGCCCTTATCTCTTCCACGTCGG +
Preference number: 6 (lower is better)
Translates to: ASPGRGGNACEK*LRSQPLSLPRR
Trigger: CCGACGTGGAAGAGATAAGGGCTGAGACCTGAGTCACTTCTCACAGGCATTCCCTCCTCGTCCCGGGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535406.5
CDS TCA 72 bp GGCAAGGGCCAGCCCGGGACGAGGAGGGAATGCCTGTaGGAAGTGACTCAGGTCTCAGCCCTTATCTCTTCC +
Preference number: 6 (lower is better)
Translates to: GKGQPGTRRECL*EVTQVSALISS
Trigger: GGAAGAGATAAGGGCTGAGACCTGAGTCACTTCTCACAGGCATTCCCTCCTCGTCCCGGGCTGGCCCTTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535406.5
CDS CCA 72 bp GGACGAGGAGGGAATGCCGGGCCCCAATTCCACCTCTaGATGCACAACAGCTCGTGGCTCAACTCCCGAAGT +
Preference number: 6 (lower is better)
Translates to: GRGGNAGPQFHL*MHNSSWLNSRS
Trigger: ACTTCGGGAGTTGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGGCCCGGCATTCCCTCCTCGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000446553.2
ENST00000538862.7
CDS GCA 72 bp GAGGAGGGAATGCCGGGCCCCAATTCCACCTCTGGATaGACAACAGCTCGTGGCTCAACTCCCGAAGTTACC +
Preference number: 6 (lower is better)
Translates to: EEGMPGPNSTSG*TTARGSTPEVT
Trigger: GGTAACTTCGGGAGTTGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGGCCCGGCATTCCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000446553.2
ENST00000538862.7
CDS GCA 72 bp GAGAGCTCTCCACCGGGCCCCAATTCCACCTCTGGATaGACAACAGCTCGTGGCTCAACTCCCGAAGTTACC +
Preference number: 6 (lower is better)
Translates to: ESSPPGPNSTSG*TTARGSTPEVT
Trigger: GGTAACTTCGGGAGTTGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGGCCCGGTGGAGAGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545368.5
CDS CCA 72 bp TGTGGAGAGCTCTCCACCGGGCCCCAATTCCACCTCTaGATGCACAACAGCTCGTGGCTCAACTCCCGAAGT +
Preference number: 6 (lower is better)
Translates to: CGELSTGPQFHL*MHNSSWLNSRS
Trigger: ACTTCGGGAGTTGAGCCACGAGCTGTTGTGCATCCAGAGGTGGAATTGGGGCCCGGTGGAGAGCTCTCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545368.5
CDS CCA 72 bp ACATTCTCTGCCTTTCCCACGCTGGCCCAGAGTACCTaGATGGGAGTGCGCAGGATGCCAGCACTAGGTGAA +
Preference number: 6 (lower is better)
Translates to: TFSAFPTLAQST*MGVRRMPALGE
Trigger: TTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTACTCTGGGCCAGCGTGGGAAAGGCAGAGAATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000536241.1
CDS CCA 72 bp GCAATACCAAGAGTAGGAGAGCGGGGATCTGAGTCCTaGGCATGTTTAAGACCCTCCAGTTGCTCCCCTGCT +
Preference number: 6 (lower is better)
Translates to: AIPRVGERGSES*ACLRPSSCSPA
Trigger: AGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCTACTCTTGGTATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
ENST00000545368.5
CDS CCA 72 bp CACCCTGTCTTCCCAGTTTCCAGTGAAGAAACTTCCTaGCGAGGGACCAGAGGCCTCTGCGGAGTTAATGAC +
Preference number: 6 (lower is better)
Translates to: HPVFPVSSEETS*RGTRGLCGVND
Trigger: GTCATTAACTCCGCAGAGGCCTCTGGTCCCTCGCCAGGAAGTTTCTTCACTGGAAACTGGGAAGACAGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535406.5
CDS TCA 72 bp TGTCCGTGCAATACCAAGAGTAGGAGAGCGGGGATCTaGGTCCTGGGCATGTTTAAGACCCTCCAGTTGCTC +
Preference number: 6 (lower is better)
Translates to: CPCNTKSRRAGI*VLGMFKTLQLL
Trigger: GAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCTACTCTTGGTATTGCACGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000229265.10
ENST00000422785.7
ENST00000446553.2
ENST00000535406.5
ENST00000536241.1
ENST00000538862.7
ENST00000540683.1
ENST00000545368.5
CDS CAA 90 bp CCTCAGTTTCTTCATACGCATGCACACACTGCTTTCCAAATCAGCTaGGAGAGACAGGCTGACTCCTTTCCCTCTTCCTCAGGCATCCTC +
Preference number: 6 (lower is better)
Translates to: PQFLHTHAHTAFQIS*ERQADSFPSSSGIL
Trigger: GAGGATGCCTGAGGAAGAGGGAAAGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTATGAAGAAACTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS GCA 72 bp GTCACTCCTCCATGGGCCTCAGTTTCTTCATACGCATaGACACACTGCTTTCCAAATCAGCTTGGAGAGACA +
Preference number: 6 (lower is better)
Translates to: VTPPWASVSSYA*THCFPNQLGET
Trigger: TGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTATGAAGAAACTGAGGCCCATGGAGGAGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS CCA 72 bp CCAGGCTGGGAACAAAATATTGAGATAAGAGTGAGATaGGTCCGAAGCAGGAGGATAGAGGCCCCTTTAAGG +
Preference number: 6 (lower is better)
Translates to: PGWEQNIEIRVR*VRSRRIEAPLR
Trigger: CCTTAAAGGGGCCTCTATCCTCCTGCTTCGGACCCATCTCACTCTTATCTCAATATTTTGTTCCCAGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS CCA 72 bp TTCATACGCATGCACACACTGCTTTCCAAATCAGCTTaGAGAGACAGGCTGACTCCTTTCCCTCTTCCTCAG +
Preference number: 6 (lower is better)
Translates to: FIRMHTLLSKSA*RDRLTPFPLPQ
Trigger: CTGAGGAAGAGGGAAAGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS CAA 72 bp CTTCATACGCATGCACACACTGCTTTCCAAATCAGCTaGGAGAGACAGGCTGACTCCTTTCCCTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: LHTHAHTAFQIS*ERQADSFPSSS
Trigger: TGAGGAAGAGGGAAAGGAGTCAGCCTGTCTCTCCAAGCTGATTTGGAAAGCAGTGTGTGCATGCGTATGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603043.1
CDS TCA 72 bp AGAATGGCTTCATGGACCCTACCCAAGAATAATAGATaGCAGCTTCATCAGCATTCCCTGGGCCCAACGCTT +
Preference number: 6 (lower is better)
Translates to: RMASWTLPKNNR*QLHQHSLGPTL
Trigger: AAGCGTTGGGCCCAGGGAATGCTGATGAAGCTGTCATCTATTATTCTTGGGTAGGGTCCATGAAGCCATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS CCA 72 bp CCAAGAATAATAGATGACAGCTTCATCAGCATTCCCTaGGCCCAACGCTTACCTCCACTGCTGGTCTTCATA +
Preference number: 6 (lower is better)
Translates to: PRIIDDSFISIP*AQRLPPLLVFI
Trigger: TATGAAGACCAGCAGTGGAGGTAAGCGTTGGGCCCAGGGAATGCTGATGAAGCTGTCATCTATTATTCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000446553.2
CDS CCA 72 bp CTAGGACTTACAGTTTATTCCTCCCACACTCACCCATaGACCTTATCCCAAAACATTATCCTAGTTTATCTT +
Preference number: 6 (lower is better)
Translates to: LGLTVYSSHTHP*TLSQNIILVYL
Trigger: AAGATAAACTAGGATAATGTTTTGGGATAAGGTCCATGGGTGAGTGTGGGAGGAATAAACTGTAAGTCCTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536241.1