RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD79A (Homo sapiens)

Ensembl gene IDs: ENSG00000105369

Ensembl transcript IDs: ENST00000221972.8, ENST00000444740.2, ENST00000597454.1

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGACACTGGAGCTGGGTaGACAGCAGGCGGGGGCAGC +
Preference number: 2 (lower is better)
Translates to: REEGVTLTRLLQSAPLEADTGAG*TAGGGS
Trigger: GCTGCCCCCGCCTGCTGTGCACCCAGCTCCAGTGTC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR TCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCATGGCCTGGAGAAGAGTaGGGTTACCCTCCCACCCCC +
Preference number: 2 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAWPGEE*GYPPTP
Trigger: GGGGGTGGGAGGGTAACCTCACTCTTCTCCAGGCCA...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR CCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGCTGAGACACTGGAGCTaGGTGCACAGCAGGCGGGGG +
Preference number: 2 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVLRHWS*VHSRRG
Trigger: CCCCCGCCTGCTGTGCACCCAGCTCCAGTGTCTCAG...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR TCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTCCCAGGGAAGTGAGCTaGGACACTGGAGCTGGGTGC +
Preference number: 2 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAPREVS*DTGAGC
Trigger: GCACCCAGCTCCAGTGTCTCAGCTCACTTCCCTGGG...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR TCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTCCCACTGGGGGAATATaGCTAAGGAAGCCCCCAGAA +
Preference number: 2 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAPTGGI*LRKPPE
Trigger: TTCTGGGGGCTTCCTTAGTCATATTCCCCCAGTGGG...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR TCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGAGCCCCCAGAAGGGCTaGAAGGAGAATGTCCCAGGG +
Preference number: 2 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRSPQKG*KENVPG
Trigger: CCCTGGGACATTCTCCTTTCAGCCCTTCTGGGGGCT...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR-3UTR TCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGAATGTCCCAGGGAAGTaGGCTGAGACACTGGAGCTG +
Preference number: 2 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRNVPGK*AETLEL
Trigger: CAGCTCCAGTGTCTCAGCTCACTTCCCTGGGACATT...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221972.8
3UTR TCA 72 bp TGCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTaGCAGATCAGGGAGGAGGGGGTGACACTAACGAGG +
Preference number: 3 (lower is better)
Translates to: CSWEEFIITKWP*QIREEGVTLTR
Trigger: CCTCGTTAGTGTCACCCCCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGGACGCGCCACCAGGTaGCGTTGGCGTTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAGRATR*RWRCCC
Trigger: GCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGACACTGGAGCTGGGTaGACAGCAGGCGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVDTGAG*TAGGGS
Trigger: GCTGCCCCCGCCTGCTGTGCACCCAGCTCCAGTGTC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACTGAGACACTGGAGCTaGGTGCACAGCAGGCGGGGG +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEALRHWS*VHSRRG
Trigger: CCCCCGCCTGCTGTGCACCCAGCTCCAGTGTCTCAG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGGGGCCACGTGTAGTTaGCATGGAGGACGCGCCACC +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVGATCS*HGGRAT
Trigger: GGTGGCGCGTCCTCCATGGCAACTACACGTGGCCCC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGCACGCGGAGGTAGGTaGCGCAGGACTGCTGGTATG +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAARGGR*RRTAGM
Trigger: CATACCAGCAGTCCTGCGGCACCTACCTCCGCGTGC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGTGGCAGGCAGAGCTTaGAGGACTCCTGGACCCCCA +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAVAGRA*RTPGPP
Trigger: TGGGGGTCCAGGAGTCCTCCAAGCTCTGCCTGCCAC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGGGCTCATTACCCGCTaGGGTGAGGGGAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVGLITR*GEGSLG
Trigger: TCCCAGGCTCCCCTCACCCCAGCGGGTAATGAGCCC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAAGCCCCCAGAAGGGCTaGAAGGAGAATGTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEASPQKG*KENVPG
Trigger: CCCTGGGACATTCTCCTTTCAGCCCTTCTGGGGGCT...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTCCACATCCTGGTAGGTaGCCTGGAGGCCCCGGGAGA +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAPHPGR*PGGPGR
Trigger: TCTCCCGGGGCCTCCAGGGCACCTACCAGGATGTGG...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGATGCTGGGACCTTGTaGATCCACAGGGCCTGGCAC +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVDAGTL*IHRAWH
Trigger: GTGCCAGGCCCTGTGGATGCACAAGGTCCCAGCATC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACTATTGTGCGGGCATTaGAAGTGGGCGTCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEALLCGH*KWASSP
Trigger: GGGGGAAGACGCCCACTTCCAATGCCCGCACAATAG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGTGTCCAGGAAGGGCCTaGGGGGCGGCTGGCGCACGC +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRCPGRA*GAAGAR
Trigger: GCGTGCGCCAGCCGCCCCCCAGGCCCTTCCTGGACA...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGCAGGACTGCTGGTATaGCTCGTTGCCCTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAAGLLV*LVALLD
Trigger: GTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGC...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAAATGTCCCAGGGAAGTaGGCTGAGACACTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEANVPGK*AETLEL
Trigger: CAGCTCCAGTGTCTCAGCTCACTTCCCTGGGACATT...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGACTCGTTGCCCTCCTaGACCCGGCACACGTATATG +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVDSLPS*TRHTYM
Trigger: CATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGTGCCGCAGGACTGCTaGTATGACTCGTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAVPQDC*YDSLPS
Trigger: GGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCAC...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGGACATCTCCTATGTTaGGGCTGCCCACATCCTGGT +
Preference number: 4 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVGHLLC*GCPHPG
Trigger: ACCAGGATGTGGGCAGCCTCAACATAGGAGATGTCC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACGTTGGCGTTGTTGCTaGTATTGTGCGGGCATTGGA +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEARWRCC*YCAGIG
Trigger: TCCAATGCCCGCACAATAGCAGCAACAACGCCAACG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACCGAGCTTCTCGTTCTaGCATCGTTTCCTGAACAGC +
Preference number: 4 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAPSFSF*HRFLNS
Trigger: GCTGTTCAGGAAACGATGGCAGAACGAGAAGCTCGG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTAGCTTGGAGGACTCCTaGACCCCCAGGCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPASLEDS*TPRHLL
Trigger: GAGAAGATGCCTGGGGGTCCAGGAGTCCTCCAAGCT...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTCAGGCTCACCATCAATaGTGCTGGGACCTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAQAHHQ*CWDLVH
Trigger: ATGCACAAGGTCCCAGCATCATTGATGGTGAGCCTG...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTTGTTCACATTCTGGATaGTCAGCGTACCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPACSHSG*SAYHWG
Trigger: ACCCCAATGGTACGCTGATCATCCAGAATGTGAACA...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGTCTGCCATCGTTTCCTaGACAGCAGCAGCGTCCCAG +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRSAIVS*TAAASQ
Trigger: CTGGGACGCTGCTGCTGTTCAGGAAACGATGGCAGA...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR TCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGCCCACTGGGGGAATATaGCTAAGGAAGCCCCCAGAA +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRPTGGI*LRKPPE
Trigger: TTCTGGGGGCTTCCTTAGTCATATTCCCCCAGTGGG...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGCCCGGCACACGTATATaGCCCCATGGCTCTTGTTCA +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRPGTRI*PHGSCS
Trigger: TGAACAAGAGCCATGGGGGCATATACGTGTGCCGGG...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR GCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGTTGTTGCTGCTATTGTaGGGGCATTGGAAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRLLLLL*GHWKWA
Trigger: CGCCCACTTCCAATGCCCGCACAATAGCAGCAACAA...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTCTCTTGTTCACATTCTaGATGATCAGCGTACCATTG +
Preference number: 4 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPALLFTF*MISVPL
Trigger: CAATGGTACGCTGATCATCCAGAATGTGAACAAGAG...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGCACGGCTTCTCCAGCTaGACATCTCCTATGTTGAGG +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRHGFSS*TSPMLR
Trigger: CCTCAACATAGGAGATGTCCAGCTGGAGAAGCCGTG...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CCA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGACGTATATGCCCCCATaGCTCTTGTTCACATTCTGG +
Preference number: 4 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRTYMPP*LLFTFW
Trigger: CCAGAATGTGAACAAGAGCCATGGGGGCATATACGT...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS TCA 90 bp GGGCGGCTGGCGCACGCGGAGGTAGGTGCCGCAGGACTGCTGGTATaGCTCGTTGCCCTCCTGGACCCGGCACACGTATATGCCCCCATG +
Preference number: 5 (lower is better)
Translates to: GRLAHAEVGAAGLLV*LVALLDPAHVYAPM
Trigger: CATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCACCTACCTCCGCGTGCGCCAGCCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS TCA 90 bp CCACTCACGGCGCACGCGGAGGTAGGTGCCGCAGGACTGCTGGTATaGCTCGTTGCCCTCCTGGACCCGGCACACGTATATGCCCCCATG +
Preference number: 5 (lower is better)
Translates to: PLTAHAEVGAAGLLV*LVALLDPAHVYAPM
Trigger: CATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCACCTACCTCCGCGTGCGCCGTGAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000597454.1
CDS GCA 90 bp GGCGCACGCGGAGGTAGGTGCCGCAGGACTGCTGGTATGACTCGTTaGCCTCCTGGACCCGGCACACGTATATGCCCCCATGGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: GARGGRCRRTAGMTR*PPGPGTRICPHGSC
Trigger: ACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCACCTACCTCCGCGTGCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS TCA 90 bp AGGAGTAGGGGTGTCACGGCTTCTCCAGCTGGACATCTCCTATGTTaGGGCTGCCCACATCCTGGTAGGTGCCCTGGAGGCCCCGGGAGA +
Preference number: 5 (lower is better)
Translates to: RSRGVTASPAGHLLC*GCPHPGRCPGGPGR
Trigger: TCTCCCGGGGCCTCCAGGGCACCTACCAGGATGTGGGCAGCCTCAACATAGGAGATGTCCAGCTGGAGAAGCCGTGACACCCCTACTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp CTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGGGGTGGGTGGCAGGCAGAGCTaGGAGGACTCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: LQSAPLEAAIKGSLPAGVGGRQS*EDSWTP
Trigger: GGGGGTCCAGGAGTCCTCCAAGCTCTGCCTGCCACC...CACCCCAGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS TCA 90 bp ACTCAGGGGGCCACGTGTAGTTGCCATGGAGGACGCGCCACCAGGTaGCGTTGGCGTTGTTGCTGCTATTGTGCGGGCATTGGAAGTGGG +
Preference number: 5 (lower is better)
Translates to: TQGATCSCHGGRATR*RWRCCCYCAGIGSG
Trigger: CCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCCTCCATGGCAACTACACGTGGCCCCCTGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS-3UTR CAA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCATGCTGGTATGACTCGTaGCCCTCCTGGACCCGGCAC +
Preference number: 5 (lower is better)
Translates to: REEGVTLTRLLQSAPLEACWYDS*PSWTRH
Trigger: GTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCA...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS GCA 90 bp TGGAGGACGCGCCACCAGGTGACGTTGGCGTTGTTGCTGCTATTGTaGGGGCATTGGAAGTGGGCGTCTTCCCCCAGGCTCACCATCAAT +
Preference number: 5 (lower is better)
Translates to: WRTRHQVTLALLLLL*GHWKWASSPRLTIN
Trigger: ATTGATGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CCA 90 bp CGCCACCAGGTGACGTTGGCGTTGTTGCTGCTATTGTGCGGGCATTaGAAGTGGGCGTCTTCCCCCAGGCTCACCATCAATGATGCTGGG +
Preference number: 5 (lower is better)
Translates to: RHQVTLALLLLLCGH*KWASSPRLTINDAG
Trigger: CCCAGCATCATTGATGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS TCA 90 bp CCCGGCACACGTATATGCCCCCATGGCTCTTGTTCACATTCTGGATaGTCAGCGTACCATTGGGGTCCTCGCCCGGGCCCAAGAACTCAG +
Preference number: 5 (lower is better)
Translates to: PGTRICPHGSCSHSG*SAYHWGPRPGPRTQ
Trigger: CTGAGTTCTTGGGCCCGGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CCA 90 bp TGGACCCGGCACACGTATATGCCCCCATGGCTCTTGTTCACATTCTaGATGATCAGCGTACCATTGGGGTCCTCGCCCGGGCCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: WTRHTYMPPWLLFTF*MISVPLGSSPGPKN
Trigger: GTTCTTGGGCCCGGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS-3UTR CAA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACAGGTGACGTTGGCGTaGTTGCTGCTATTGTGCGGG +
Preference number: 5 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAQVTLA*LLLLCG
Trigger: CCCGCACAATAGCAGCAACAACGCCAACGTCACCTG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCACGCCACCAGGTGACGTaGGCGTTGTTGCTGCTATTG +
Preference number: 5 (lower is better)
Translates to: REEGVTLTRLLQSAPLEARHQVT*ALLLLL
Trigger: CAATAGCAGCAACAACGCCAACGTCACCTGGTGGCG...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGTTGTTGCTGCTATaGTGCGGGCATTGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAALLLL*CGHWKW
Trigger: CCACTTCCAATGCCCGCACAATAGCAGCAACAACGC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp AGGGAGGAGGGGGTGACACTAACGAGGCTGCTACAATCAGCTCCCCTAGAGGCAGTGACGTTGGCGTTGTaGCTGCTATTGTGCGGGCAT +
Preference number: 5 (lower is better)
Translates to: REEGVTLTRLLQSAPLEAVTLAL*LLLCGH
Trigger: ATGCCCGCACAATAGCAGCAACAACGCCAACGTCAC...TGCCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCCCCTCCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTGTGATGATTCGGTTCTaGGTGCCCTCCCCCATGTCC +
Preference number: 5 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAVMIRF*VPSPMS
Trigger: GGACATGGGGGAGGGCACCAAGAACCGAATCATCAC...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS CCA 90 bp TATGACTCGTTGCCCTCCTGGACCCGGCACACGTATATGCCCCCATaGCTCTTGTTCACATTCTGGATGATCAGCGTACCATTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: YDSLPSWTRHTYMPP*LLFTFWMISVPLGS
Trigger: GGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS-3UTR CAA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGATGATCAGCGTACCATaGGGGTCCTCGCCCGGGCCC +
Preference number: 5 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRMISVP*GSSPGP
Trigger: GGGCCCGGGCGAGGACCCCAATGGTACGCTGATCAT...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS CCA 90 bp CATCCTGGTAGGTGCCCTGGAGGCCCCGGGAGATGTCCTCATACATaGAGCAGTCGTCCAGGTTCAGGCCTTCATAAAGGTTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: HPGRCPGGPGRCPHT*SSRPGSGLHKGFHL
Trigger: AAGATGAAAACCTTTATGAAGGCCTGAACCTGGACGACTGCTCCATGTATGAGGACATCTCCCGGGGCCTCCAGGGCACCTACCAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000444740.2
CDS-3UTR CAA 90 bp GCAGTTGGGAAGAATTTATTATCACTAAGTGGCCCTGACAGATCAGGGAGGAGGGCTATTGTGCGGGCATaGGAAGTGGGCGTCTTCCCC +
Preference number: 5 (lower is better)
Translates to: AVGKNLLSLSGPDRSGRRAIVRA*EVGVFP
Trigger: GGGGAAGACGCCCACTTCCAATGCCCGCACAATAGC...CCTCCTCCCTGATCTGTCAGGGCCACTTAGTGATAATAAATTCTTCCCAACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS-3UTR CAA 90 bp AGGCTGCTACAATCAGCTCCCCTAGAGGCAGCGATTAAGGGCTCATTACCCGCTATGCCCCCATGGCTCTaGTTCACATTCTGGATGATC +
Preference number: 5 (lower is better)
Translates to: RLLQSAPLEAAIKGSLPAMPPWL*FTFWMI
Trigger: GATCATCCAGAATGTGAACAAGAGCCATGGGGGCAT...AGCGGGTAATGAGCCCTTAATCGCTGCCTCTAGGGGAGCTGATTGTAGCAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS CAA 90 bp CCATGGAGGACGCGCCACCAGGTGACGTTGGCGTTGTTGCTGCTATaGTGCGGGCATTGGAAGTGGGCGTCTTCCCCCAGGCTCACCATC +
Preference number: 6 (lower is better)
Translates to: PWRTRHQVTLALLLL*CGHWKWASSPRLTI
Trigger: GATGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCCTCCATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS GCA 72 bp CGCCACCAGGTGACGTTGGCGTTGTTGCTGCTATTGTaGGGGCATTGGAAGTGGGCGTCTTCCCCCAGGCTC +
Preference number: 6 (lower is better)
Translates to: RHQVTLALLLLL*GHWKWASSPRL
Trigger: GAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS GCA 72 bp GGAGGTAGGTGCCGCAGGACTGCTGGTATGACTCGTTaGCCTCCTGGACCCGGCACACGTATATGCCCCCAT +
Preference number: 6 (lower is better)
Translates to: GGRCRRTAGMTR*PPGPGTRICPH
Trigger: ATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCACCTACCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CCA 72 bp GTGCCGCAGGACTGCTGGTATGACTCGTTGCCCTCCTaGACCCGGCACACGTATATGCCCCCATGGCTCTTG +
Preference number: 6 (lower is better)
Translates to: VPQDCWYDSLPS*TRHTYMPPWLL
Trigger: CAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGAGTCATACCAGCAGTCCTGCGGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CAA 72 bp ACGCGCCACCAGGTGACGTTGGCGTTGTTGCTGCTATaGTGCGGGCATTGGAAGTGGGCGTCTTCCCCCAGG +
Preference number: 6 (lower is better)
Translates to: TRHQVTLALLLL*CGHWKWASSPR
Trigger: CCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CAA 72 bp AGGAGGATGATCCCCTCGGCTGTGATGATTCGGTTCTaGGTGCCCTCCCCCATGTCCAGGAAGGGCCTGGGG +
Preference number: 6 (lower is better)
Translates to: RRMIPSAVMIRF*VPSPMSRKGLG
Trigger: CCCCAGGCCCTTCCTGGACATGGGGGAGGGCACCAAGAACCGAATCATCACAGCCGAGGGGATCATCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS TCA 72 bp GGTGTCACGGCTTCTCCAGCTGGACATCTCCTATGTTaGGGCTGCCCACATCCTGGTAGGTGCCCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: GVTASPAGHLLC*GCPHPGRCPGG
Trigger: GCCTCCAGGGCACCTACCAGGATGTGGGCAGCCTCAACATAGGAGATGTCCAGCTGGAGAAGCCGTGACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000221972.8
CDS CAA 72 bp CCATGGAGGACGCGCCACCAGGTGACGTTGGCGTTGTaGCTGCTATTGTGCGGGCATTGGAAGTGGGCGTCT +
Preference number: 6 (lower is better)
Translates to: PWRTRHQVTLAL*LLLCGHWKWAS
Trigger: AGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCCTCCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CAA 72 bp TTGCCATGGAGGACGCGCCACCAGGTGACGTTGGCGTaGTTGCTGCTATTGTGCGGGCATTGGAAGTGGGCG +
Preference number: 6 (lower is better)
Translates to: LPWRTRHQVTLA*LLLLCGHWKWA
Trigger: CGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACCTGGTGGCGCGTCCTCCATGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS TCA 72 bp TTGGAAGTGGGCGTCTTCCCCCAGGCTCACCATCAATaGTGCTGGGACCTTGTGCATCCACAGGGCCTGGCA +
Preference number: 6 (lower is better)
Translates to: LEVGVFPQAHHQ*CWDLVHPQGLA
Trigger: TGCCAGGCCCTGTGGATGCACAAGGTCCCAGCATCATTGATGGTGAGCCTGGGGGAAGACGCCCACTTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CAA 72 bp TGGCTCTTGTTCACATTCTGGATGATCAGCGTACCATaGGGGTCCTCGCCCGGGCCCAAGAACTCAGGGGGC +
Preference number: 6 (lower is better)
Translates to: WLLFTFWMISVP*GSSPGPKNSGG
Trigger: GCCCCCTGAGTTCTTGGGCCCGGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CAA 90 bp TCGTTGCCCTCCTGGACCCGGCACACGTATATGCCCCCATGGCTCTaGTTCACATTCTGGATGATCAGCGTACCATTGGGGTCCTCGCCC +
Preference number: 6 (lower is better)
Translates to: SLPSWTRHTYMPPWL*FTFWMISVPLGSSP
Trigger: GGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAACGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS TCA 72 bp CGTATATGCCCCCATGGCTCTTGTTCACATTCTGGATaGTCAGCGTACCATTGGGGTCCTCGCCCGGGCCCA +
Preference number: 6 (lower is better)
Translates to: RICPHGSCSHSG*SAYHWGPRPGP
Trigger: TGGGCCCGGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CAA 72 bp GGTGACGTTGGCGTTGTTGCTGCTATTGTGCGGGCATaGGAAGTGGGCGTCTTCCCCCAGGCTCACCATCAA +
Preference number: 6 (lower is better)
Translates to: GDVGVVAAIVRA*EVGVFPQAHHQ
Trigger: TTGATGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CCA 72 bp GTGACGTTGGCGTTGTTGCTGCTATTGTGCGGGCATTaGAAGTGGGCGTCTTCCCCCAGGCTCACCATCAAT +
Preference number: 6 (lower is better)
Translates to: VTLALLLLLCGH*KWASSPRLTIN
Trigger: ATTGATGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCACAATAGCAGCAACAACGCCAACGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000221972.8
ENST00000444740.2
ENST00000597454.1
CDS CCA 72 bp CACACGTATATGCCCCCATGGCTCTTGTTCACATTCTaGATGATCAGCGTACCATTGGGGTCCTCGCCCGGG +
Preference number: 6 (lower is better)
Translates to: HTYMPPWLLFTF*MISVPLGSSPG
Trigger: CCCGGGCGAGGACCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CCA 72 bp TTGCCCTCCTGGACCCGGCACACGTATATGCCCCCATaGCTCTTGTTCACATTCTGGATGATCAGCGTACCA +
Preference number: 6 (lower is better)
Translates to: LPSWTRHTYMPP*LLFTFWMISVP
Trigger: TGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGAGGGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CAA 72 bp TCCTGGACCCGGCACACGTATATGCCCCCATGGCTCTaGTTCACATTCTGGATGATCAGCGTACCATTGGGG +
Preference number: 6 (lower is better)
Translates to: SWTRHTYMPPWL*FTFWMISVPLG
Trigger: CCCCAATGGTACGCTGATCATCCAGAATGTGAACAAGAGCCATGGGGGCATATACGTGTGCCGGGTCCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000221972.8
ENST00000597454.1
CDS CAA 72 bp GCAGAGGAGAATGTCCGTCCCTCTGTCCAAGCCGGTTaGAAACCCACATTGAAGGTACTGGCTCTATCCCCA +
Preference number: 6 (lower is better)
Translates to: AEENVRPSVQAG*KPTLKVLALSP
Trigger: TGGGGATAGAGCCAGTACCTTCAATGTGGGTTTCAAACCGGCTTGGACAGAGGGACGGACATTCTCCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000597454.1
CDS CAA 90 bp CCCCACTCTGCAGAGGAGAATGTCCGTCCCTCTGTCCAAGCCGGTTaGAAACCCACATTGAAGGTACTGGCTCTATCCCCACTTCAAAGA +
Preference number: 6 (lower is better)
Translates to: PHSAEENVRPSVQAG*KPTLKVLALSPLQR
Trigger: TCTTTGAAGTGGGGATAGAGCCAGTACCTTCAATGTGGGTTTCAAACCGGCTTGGACAGAGGGACGGACATTCTCCTCTGCAGAGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000597454.1