RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD28 (Homo sapiens)

Ensembl gene IDs: ENSG00000178562

Ensembl transcript IDs: ENST00000324106.9, ENST00000374481.7, ENST00000458610.6

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGGCATTGGTGGCCCAACAGGGGCCTGAGGTGGCCGGCTGGAGATaGCGGTCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGG +
Preference number: 1 (lower is better)
Translates to: LALVAQQGPEVAGWR*RSFPIQSSDIEQMG
Trigger: CCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR TCA 90 bp TCTAGTCACTCGAGAAAAATTGGCATTGGTGGCCCAACAGGGGCCTaGGGTGGCCGGCTGGAGATGGCGGTCATTTCCTATCCAGAGCAG +
Preference number: 1 (lower is better)
Translates to: SSHSRKIGIGGPTGA*GGRLEMAVISYPEQ
Trigger: CTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGACTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 90 bp GAAAAATTGGCATTGGTGGCCCAACAGGGGCCTGAGGTGGCCGGCTaGAGATGGCGGTCATTTCCTATCCAGAGCAGTGATATTGAGCAG +
Preference number: 1 (lower is better)
Translates to: EKLALVAQQGPEVAG*RWRSFPIQSSDIEQ
Trigger: CTGCTCAATATCACTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 90 bp TCACTCGAGAAAAATTGGCATTGGTGGCCCAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGTCATTTCCTATCCAGAGCAGTGATA +
Preference number: 1 (lower is better)
Translates to: SLEKNWHWWPNRGLR*PAGDGGHFLSRAVI
Trigger: TATCACTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR TCA 90 bp AAAATACTTTCCCATGTGAATGGACCTCCAAGGTACAGGAGCAGCTaGGCCCAGAGTTTTGGAGCTCTGAGCCCTAAACCACATAAAGTC +
Preference number: 1 (lower is better)
Translates to: KILSHVNGPPRYRSS*AQSFGALSPKPHKV
Trigger: GACTTTATGTGGTTTAGGGCTCAGAGCTCCAAAACTCTGGGCTCAGCTGCTCCTGTACCTTGGAGGTCCATTCACATGGGAAAGTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 90 bp CCCTCACCCCAGGTCTTGAGAGAGTGTGTGTCACTCTCTTTGACCTaGATTATTAATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGT +
Preference number: 1 (lower is better)
Translates to: PSPQVLRECVSLSLT*IINKSIAIKILVLG
Trigger: ACCCAGAACCAGGATCTTGATTGCTATAGACTTATTAATAATCCAGGTCAAAGAGAGTGACACACACTCTCTCAAGACCTGGGGTGAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 90 bp ACTTCTGGAAGATTGTCACCTAATGCTGGCTATCTCCTCAGCACATaGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAG +
Preference number: 1 (lower is better)
Translates to: TSGRLSPNAGYLLST*QEFHYSILFVLLPK
Trigger: CTTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGGAGATAGCCAGCATTAGGTGACAATCTTCCAGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR TCA 90 bp ATGACAGGGAGTGAGGAAAGCAACTTGGTTTACCTGATATTGCTTTaGGGGAATCCCTCATTTGACCAAATCCCTCATTTGGTCAAAATG +
Preference number: 1 (lower is better)
Translates to: MTGSEESNLVYLILL*GNPSFDQIPHLVKM
Trigger: CATTTTGACCAAATGAGGGATTTGGTCAAATGAGGGATTCCCTCAAAGCAATATCAGGTAAACCAAGTTGCTTTCCTCACTCCCTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp TGGCCGGCTGGAGATGGCGGTCATTTCCTATCCAGAGCAGTGATATaGAGCAGATGGGGGCTGCCAGCCGGCTGGCTTCTGGATAGGCGT +
Preference number: 2 (lower is better)
Translates to: WPAGDGGHFLSRAVI*SRWGLPAGWLLDRR
Trigger: ACGCCTATCCAGAAGCCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGT +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPNRGLR*PAGDGG
Trigger: ACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGGGCTGCCAGCCGGCTaGCTTCTGGATAGGCGTCCG +
Preference number: 2 (lower is better)
Translates to: PQHMARISLLHSIRPPSKGLPAG*LLDRRP
Trigger: CGGACGCCTATCCAGAAGCCAGCCGGCTGGCAGCCC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCCTGAGGTGGCCGGCTaGAGATGGCGGTCATTTCCT +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVPEVAG*RWRSFP
Trigger: AGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCGTGATATTGAGCAGATaGGGGCTGCCAGCCGGCTGG +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPVILSR*GLPAGW
Trigger: CCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCAC...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCCTGAGGTGGCCGGCTaGAGATGGCGGTCATTTCCT +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPPEVAG*RWRSFP
Trigger: AGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGT +
Preference number: 2 (lower is better)
Translates to: PQHMARISLLHSIRPPSKNRGLR*PAGDGG
Trigger: ACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAGCCTCTTGGGCAGCTaGGATTACAGGTGCCTGCCA +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVSLLGS*DYRCLP
Trigger: TGGCAGGCACCTGTAATCCCAGCTGCCCAAGAGGCT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp AGGAGCTCTCACCAGGGCACCTTCTGCCTGACCACTTCTGGAAGATaGTCACCTAATGCTGGCTATCTCCTCAGCACATGGCAAGAATTT +
Preference number: 2 (lower is better)
Translates to: RSSHQGTFCLTTSGR*SPNAGYLLSTWQEF
Trigger: AAATTCTTGCCATGTGCTGAGGAGATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCTGGTGAGAGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCAGGCTGGAGAGCTGTaGCACTATCTCGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPQAGEL*HYLGSL
Trigger: CAGTGAGCCGAGATAGTGCCACAGCTCTCCAGCCTG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCAGGCTGGAGAGCTGTaGCACTATCTCGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMQAGEL*HYLGSL
Trigger: CAGTGAGCCGAGATAGTGCCACAGCTCTCCAGCCTG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCTCTGTCGCCCAGGCTaGAGAGCTGTGGCACTATCT +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMLCRPG*RAVALS
Trigger: AGATAGTGCCACAGCTCTCCAGCCTGGGCGACAGAG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCTCTGTCGCCCAGGCTaGAGAGCTGTGGCACTATCT +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPLCRPG*RAVALS
Trigger: AGATAGTGCCACAGCTCTCCAGCCTGGGCGACAGAG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCAAGAAGCTGGCAAGTaGCACACGTGCCAGGGTAAA +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVQEAGK*HTCQGK
Trigger: TTTACCCTGGCACGTGTGCCACTTGCCAGCTTCTTG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGGGATTACAGGTGCCTaGCACCAGGCCAAGCTAAAT +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMGITGA*HQAKLN
Trigger: ATTTAGCTTGGCCTGGTGGCAGGCACCTGTAATCCC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAGGTGGGCAGTGACTTaGCTGAGGCTATTCAACTAC +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVRWAVT*LRLFNY
Trigger: GTAGTTGAATAGCCTCAGGCAAGTCACTGCCCACCT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGGCAAGTGGCACACGTaGCAGGGTAAATCCAACAGT +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMGKWHT*QGKSNS
Trigger: ACTGTTGGATTTACCCTGGCACGTGTGCCACTTGCC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAAAAATTGGCATTGGTaGCCCAACAGGGGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPKNWHW*PNRGLR
Trigger: CCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGAAAAATTGGCATTGGTaGCCCAACAGGGGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMKNWHW*PNRGLR
Trigger: CCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTT...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGCAAGAAGCTGGCAAGTaGCACACGTGCCAGGGTAAA +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQQEAGK*HTCQGK
Trigger: TTTACCCTGGCACGTGTGCCACTTGCCAGCTTCTTG...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp ACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCACTTaGGATCTCCACACCGACATTAAAGAGACCAACTGTGCAACCCTG +
Preference number: 2 (lower is better)
Translates to: TVFSLLLWTLFPQPT*DLHTDIKETNCATL
Trigger: CAGGGTTGCACAGTTGGTCTCTTTAATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCACCAGGGCACCTTCTaGCTGACCACTTCTGGAAGA +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSHQGTF*LTTSGR
Trigger: TCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCTGGTG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp CCTCAAATGGCCTTGCAGATAACACAGACTCCCTCACCCCAGGTCTaGAGAGAGTGTGTGTCACTCTCTTTGACCTGGATTATTAATAAG +
Preference number: 2 (lower is better)
Translates to: PQMALQITQTPSPQV*RECVSLSLTWIINK
Trigger: CTTATTAATAATCCAGGTCAAAGAGAGTGACACACACTCTCTCAAGACCTGGGGTGAGGGAGTCTGTGTTATCTGCAAGGCCATTTGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp GCATATATCTATAGGAAAGAGAGACTTTCTGAGCCTCAAATGGCCTaGCAGATAACACAGACTCCCTCACCCCAGGTCTTGAGAGAGTGT +
Preference number: 2 (lower is better)
Translates to: AYIYRKERLSEPQMA*QITQTPSPQVLREC
Trigger: ACACTCTCTCAAGACCTGGGGTGAGGGAGTCTGTGTTATCTGCAAGGCCATTTGAGGCTCAGAAAGTCTCTCTTTCCTATAGATATATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCTCTCATGACAGGGAGTaGGGAAAGCAACTTGGTTTA +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVSHDRE*GKQLGL
Trigger: TAAACCAAGTTGCTTTCCTCACTCCCTGTCATGAGA...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAGCATGAACAAATGGTaGGGGCCACTGAAGGGCCAT +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSSMNKW*GPLKGH
Trigger: ATGGCCCTTCAGTGGCCCTCACCATTTGTTCATGCT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTCACTCGAGAAAAATTaGCATTGGTGGCCCAACAGG +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQSLEKN*HWWPNR
Trigger: CCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTGGCACTGTAAGACTTaGCCTGTCACAGGAAATCTC +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPWHCKT*PVTGNL
Trigger: GAGATTTCCTGTGACAGGCCAAGTCTTACAGTGCCA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAAGCCTCTTGGGCAGCTaGGATTACAGGTGCCTGCCA +
Preference number: 2 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPSLLGS*DYRCLP
Trigger: TGGCAGGCACCTGTAATCCCAGCTGCCCAAGAGGCT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCTTCCACAACCCACTTTaGATCTCCACACCGACATTA +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVFHNPL*ISTPTL
Trigger: TAATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAA...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp ATTGGCACCATCTCTAATCTCCAGCATGTAGTTGAATTTAACACTTaGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: IGTISNLQHVVEFNT*GSVSRSGIVPSWQC
Trigger: GCACTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTCAACTACATGCTGGAGATTAGAGATGGTGCCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCACACTTTGCTTGACTaGGATGTGCAGGTGAGTGAG +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSHTLLD*DVQVSE
Trigger: CTCACTCACCTGCACATCTCAGTCAAGCAAAGTGTG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCACGTGGCTCATTTCATaGGTGGGAGACAGTGTTTTA +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPTWLIS*VGDSVL
Trigger: TAAAACACTGTCTCCCACTCATGAAATGAGCCACGT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAGGGAATCCCTCATTTaGCCAAATCCCTCATTTGGT +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPRESLI*PNPSFG
Trigger: ACCAAATGAGGGATTTGGTCAAATGAGGGATTCCCT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTAGGGCACCTTCTGCCTaGCCACTTCTGGAAGATTGT +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSRAPSA*PLLEDC
Trigger: ACAATCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGGAATTAACTGAAGCATaGACAAATGGTGAGGGCCAC +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQELTEA*TNGEGH
Trigger: GTGGCCCTCACCATTTGTTCATGCTTCAGTTAATTC...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTACAAGCATGAGCCACTaGGCCAGGTCCCATAGTACT +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSTSMSH*ARSHST
Trigger: AGTACTATGGGACCTGGCGCAGTGGCTCATGCTTGT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGTGATATTGAGCAGATaGGGGCTGCCAGCCGGCTGG +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYVILSR*GLPAGW
Trigger: CCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCAC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGAGAAAAATTGGCATTaGTGGCCCAACAGGGGCCTG +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSEKNWH*WPNRGL
Trigger: CAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAAGTACATGGTAAGTTaGAATGTGGGCCATGGCACT +
Preference number: 2 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPKYMVS*NVGHGT
Trigger: AGTGCCATGGCCCACATTCCAACTTACCATGTACTT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp CAGACTCCCTCACCCCAGGTCTTGAGAGAGTGTGTGTCACTCTCTTaGACCTGGATTATTAATAAGTCTATAGCAATCAAGATCCTGGTT +
Preference number: 2 (lower is better)
Translates to: QTPSPQVLRECVSLS*TWIINKSIAIKILV
Trigger: AACCAGGATCTTGATTGCTATAGACTTATTAATAATCCAGGTCAAAGAGAGTGACACACACTCTCTCAAGACCTGGGGTGAGGGAGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGTCTGATAACTTGGATTaGAGAACTCTGTGTGCCCAA +
Preference number: 2 (lower is better)
Translates to: IKILVLGPLLAPSLISSMSDNLD*RTLCAQ
Trigger: TTGGGCACACAGAGTTCTTCAATCCAAGTTATCAGA...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCGAAACATCTCAAGTGTaGTTCATCTTTAGTAGGCCT +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVETSQV*FIFSRP
Trigger: AGGCCTACTAAAGATGAATCACACTTGAGATGTTTC...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGATAGCACCTCATCCCTaGGTAGTGGGTTTAAATTTG +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQIAPHP*VVGLNL
Trigger: CAAATTTAAACCCACTACGCAGGGATGAGGTGCTAT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCTGGCACTGTAAGACTTaGCCTGTCACAGGAAATCTC +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSWHCKT*PVTGNL
Trigger: GAGATTTCCTGTGACAGGCCAAGTCTTACAGTGCCA...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTCCAAAGAACCTTCTTaGGACTCATCCTCATACTCT +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQSKEPS*DSSSYS
Trigger: AGAGTATGAGGATGAGTCCCAAGAAGGTTCTTTGGA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCACTTTCCCATGTGAATaGACCTCCAAGGTACAGGAG +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSTFPCE*TSKVQE
Trigger: CTCCTGTACCTTGGAGGTCCATTCACATGGGAAAGT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAGTCAAAGACAGACTTaGGCCATGCCCTTATGGAGA +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSSQRQT*AMPLWR
Trigger: TCTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGGCAGTGCAAATGGCTaGGATAAGGGATCAGACATG +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSGSANG*DKGSDM
Trigger: CATGTCTGATCCCTTATCCCAGCCATTTGCACTGCC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATAGGTACAGGAGCAGCTaGGCCCAGAGTTTTGGAGCT +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYRYRSS*AQSFGA
Trigger: AGCTCCAAAACTCTGGGCTCAGCTGCTCCTGTACCT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATTGGAATGTGGGCCATaGCACTGTAAGACTTGGCCT +
Preference number: 2 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPLECGP*HCKTWP
Trigger: AGGCCAAGTCTTACAGTGCCATGGCCCACATTCCAA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAAGTACATGGTAAGTTaGAATGTGGGCCATGGCACT +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSKYMVS*NVGHGT
Trigger: AGTGCCATGGCCCACATTCCAACTTACCATGTACTT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAAGGAAAGCTCCTACCTaGTCTGATTGGAATGAACTG +
Preference number: 2 (lower is better)
Translates to: PQHMARISLLHSIRPPSKRKAPT*SDWNEL
Trigger: CAGTTCATTCCAATCAGACCAGGTAGGAGCTTTCCT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTACGTGGCTCATTTCATaGGTGGGAGACAGTGTTTTA +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSTWLIS*VGDSVL
Trigger: TAAAACACTGTCTCCCACTCATGAAATGAGCCACGT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTAGGGAATCCCTCATTTaGCCAAATCCCTCATTTGGT +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSRESLI*PNPSFG
Trigger: ACCAAATGAGGGATTTGGTCAAATGAGGGATTCCCT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTTCTCATGACAGGGAGTaGGGAAAGCAACTTGGTTTA +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSSHDRE*GKQLGL
Trigger: TAAACCAAGTTGCTTTCCTCACTCCCTGTCATGAGA...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAAATACTTTCCCATGTaGATGGACCTCCAAGGTACA +
Preference number: 2 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSKYFPM*MDLQGT
Trigger: TGTACCTTGGAGGTCCATTCACATGGGAAAGTATTT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATAATGGTGAGGGCCACTaGAGGGCCATTCTTCAAGGT +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYNGEGH*RAILQG
Trigger: ACCTTGAAGAATGGCCCTTCAGTGGCCCTCACCATT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGAATTAACTGAAGCATaGACAAATGGTGAGGGCCAC +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSELTEA*TNGEGH
Trigger: GTGGCCCTCACCATTTGTTCATGCTTCAGTTAATTC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATACAAGCATGAGCCACTaGGCCAGGTCCCATAGTACT +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYTSMSH*ARSHST
Trigger: AGTACTATGGGACCTGGCGCAGTGGCTCATGCTTGT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGGGATTACAGGTGCCTaGCACCAGGCCAAGCTAAAT +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYGITGA*HQAKLN
Trigger: ATTTAGCTTGGCCTGGTGGCAGGCACCTGTAATCCC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCATAAAAGTGGGAGGTaGCTTATATTTCATTACAAG +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVHKSGR*LIFHYK
Trigger: CTTGTAATGAAATATAAGGCACCTCCCACTTTTATG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCTACAATCTGATAACTTaGATTGAAGAACTCTGTGTG +
Preference number: 2 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVYNLIT*IEELCV
Trigger: CACACAGAGTTCTTCAATCCAAGTTATCAGATTGTA...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGCAACTTGGTTTACCTaGTATTGCTTTGAGGGAATC +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSATWFT*YCFEGI
Trigger: GATTCCCTCAAAGCAATATCAGGTAAACCAAGTTGC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATAGGTGGGCAGTGACTTaGCTGAGGCTATTCAACTAC +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYRWAVT*LRLFNY
Trigger: GTAGTTGAATAGCCTCAGGCAAGTCACTGCCCACCT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGCATAAAAGTGGGAGGTaGCTTATATTTCATTACAAG +
Preference number: 2 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQHKSGR*LIFHYK
Trigger: CTTGTAATGAAATATAAGGCACCTCCCACTTTTATG...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGTGGATACCACACTTTaGTTGACTGAGATGTGCAGG +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYVDTTL*LTEMCR
Trigger: CCTGCACATCTCAGTCAAGCAAAGTGTGGTATCCAC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAATAGCACCTCATCCCTaGGTAGTGGGTTTAAATTTG +
Preference number: 2 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPIAPHP*VVGLNL
Trigger: CAAATTTAAACCCACTACGCAGGGATGAGGTGCTAT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCCTACCTGGTCTGATTaGAATGAACTGTTAGACAAA +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSPTWSD*NELLDK
Trigger: TTTGTCTAACAGTTCATTCCAATCAGACCAGGTAGG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTTCTCACTTCTCCTATaGACGCTCTTTCCACAACCC +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYFSLLL*TLFPQP
Trigger: GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTTCCTACCACTGTTTTTaGACCATTTCTTGGTTCATA +
Preference number: 2 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSSYHCF*TISWFI
Trigger: TATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGA...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGCAACTTGGTTTACCTaGTATTGCTTTGAGGGAATC +
Preference number: 2 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYATWFT*YCFEGI
Trigger: GATTCCCTCAAAGCAATATCAGGTAAACCAAGTTGC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACTCTTTAAATTGGCATaGTTAACCCAAATAGGTGAG +
Preference number: 2 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPLFKLA*LTQIGE
Trigger: CTCACCTATTTGGGTTAAGCATGCCAATTTAAAGAG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAACAGTATTTTCGATCTaGAATCTCAAGATTCCTACT +
Preference number: 2 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPTVFSI*NLKIPT
Trigger: AGTAGGAATCTTGAGATTCCAGATCGAAAATACTGT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 90 bp GAAACTATGAAAGCATTGCTCCTACCACTGTTTTTGAACCATTTCTaGGTTCATACTAATAGTGAAAACGGACTTCCCTGTATAACATTT +
Preference number: 2 (lower is better)
Translates to: ETMKALLLPLFLNHF*VHTNSENGLPCITF
Trigger: AAATGTTATACAGGGAAGTCCGTTTTCACTATTAGTATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGAGCAATGCTTTCATAGTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 72 bp GTGGCCCAACAGGGGCCTGAGGTGGCCGGCTGGAGATaGCGGTCATTTCCTATCCAGAGCAGTGATATTGAG +
Preference number: 3 (lower is better)
Translates to: VAQQGPEVAGWR*RSFPIQSSDIE
Trigger: CTCAATATCACTGCTCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 72 bp AAAAATTGGCATTGGTGGCCCAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGTCATTTCCTATCCAGA +
Preference number: 3 (lower is better)
Translates to: KNWHWWPNRGLR*PAGDGGHFLSR
Trigger: TCTGGATAGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR TCA 72 bp TCCCATGTGAATGGACCTCCAAGGTACAGGAGCAGCTaGGCCCAGAGTTTTGGAGCTCTGAGCCCTAAACCA +
Preference number: 3 (lower is better)
Translates to: SHVNGPPRYRSS*AQSFGALSPKP
Trigger: TGGTTTAGGGCTCAGAGCTCCAAAACTCTGGGCTCAGCTGCTCCTGTACCTTGGAGGTCCATTCACATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 72 bp CACTTCTCCTATGGACGCTCTTTCCACAACCCACTTTaGATCTCCACACCGACATTAAAGAGACCAACTGTG +
Preference number: 3 (lower is better)
Translates to: HFSYGRSFHNPL*ISTPTLKRPTV
Trigger: CACAGTTGGTCTCTTTAATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAAGAGCGTCCATAGGAGAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGGTCACTCGAGAAAAATaGGCATTGGTGGCCCAACAG +
Preference number: 3 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQVTREK*ALVAQQ
Trigger: CTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGAC...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGTTTCCACAACCCACTTaGGATCTCCACACCGACATT +
Preference number: 3 (lower is better)
Translates to: IKILVLGPLLAPSLISSMFPQPT*DLHTDI
Trigger: AATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAA...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGTCACTCGAGAAAAATaGGCATTGGTGGCCCAACAG +
Preference number: 3 (lower is better)
Translates to: PQHMARISLLHSIRPPSKVTREK*ALVAQQ
Trigger: CTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGAC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGAGTCAAAGACAGACTaGGGCCATGCCCTTATGGAG +
Preference number: 3 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSESKTD*GHALME
Trigger: CTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACTC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCTTTCCACAACCCACTTaGGATCTCCACACCGACATT +
Preference number: 3 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSFPQPT*DLHTDI
Trigger: AATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAA...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGAGTCAAAGACAGACTaGGGCCATGCCCTTATGGAG +
Preference number: 3 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPESKTD*GHALME
Trigger: CTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACTC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTTCTATCCAAATTCCTaGCCAAAGCGAAGCATATCT +
Preference number: 3 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQFYPNS*PKRSIS
Trigger: AGATATGCTTCGCTTTGGCAAGGAATTTGGATAGAA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR TCA 72 bp AAGAGGTCAGCCATTGGTCTGATAAGAAATTGTGACTaGAGTCAAGCAAACAAACCAGAAACGTACCCTGCT +
Preference number: 3 (lower is better)
Translates to: KRSAIGLIRNCD*SQANKPETYPA
Trigger: AGCAGGGTACGTTTCTGGTTTGTTTGCTTGACTTCAGTCACAATTTCTTATCAGACCAATGGCTGACCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTACCACTTCTGGAAGATaGTCACCTAATGCTGGCTAT +
Preference number: 3 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSTTSGR*SPNAGY
Trigger: ATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGAATCCACTCCCTTTTaGTTTTCTACCCTAACTTCT +
Preference number: 3 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSESTPF*FSTLTS
Trigger: AGAAGTTAGGGTAGAAAACAAAAAGGGAGTGGATTC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGAGGGAATCCCTCATTaGACCAAATCCCTCATTTGG +
Preference number: 3 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYEGIPH*TKSLIW
Trigger: CCAAATGAGGGATTTGGTCAAATGAGGGATTCCCTC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTAGTGAGGAAAGCAACTaGGTTTACCTGATATTGCTT +
Preference number: 3 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSSEESN*VYLILL
Trigger: AAGCAATATCAGGTAAACCAAGTTGCTTTCCTCACT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCCCCTTCTTAGGCTATaGCCCAGTTTAATTTTTATA +
Preference number: 3 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSPLLRL*PSLIFI
Trigger: TATAAAAATTAAACTGGGCAATAGCCTAAGAAGGGG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACAAGTACTGCTGAGTTaGATCTTCTTGGGACTGATT +
Preference number: 3 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPQVLLS*IFLGLI
Trigger: AATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTCCTACCACTGTTTTaGAACCATTTCTTGGTTCAT +
Preference number: 3 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSLLPLF*NHFLVH
Trigger: ATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGAG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CCA 72 bp CAGGTCTTGAGAGAGTGTGTGTCACTCTCTTTGACCTaGATTATTAATAAGTCTATAGCAATCAAGATCCTG +
Preference number: 3 (lower is better)
Translates to: QVLRECVSLSLT*IINKSIAIKIL
Trigger: CAGGATCTTGATTGCTATAGACTTATTAATAATCCAGGTCAAAGAGAGTGACACACACTCTCTCAAGACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATACCACTTCTGGAAGATaGTCACCTAATGCTGGCTAT +
Preference number: 3 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYTTSGR*SPNAGY
Trigger: ATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACTGAGTTTGATCTTCTaGGGACTGATTAAATCCATG +
Preference number: 3 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPLSLIF*GLIKSM
Trigger: CATGGATTTAATCAGTCCCAAGAAGATCAAACTCAG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACCCCTTCTTAGGCTATaGCCCAGTTTAATTTTTATA +
Preference number: 3 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPPLLRL*PSLIFI
Trigger: TATAAAAATTAAACTGGGCAATAGCCTAAGAAGGGG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR GCA 72 bp AAGTTAAAAGGTCCTCATATTATAGCACCTCATCCCTaGGTAGTGGGTTTAAATTTGTGTTACAATATTCCC +
Preference number: 3 (lower is better)
Translates to: KLKGPHIIAPHP*VVGLNLCYNIP
Trigger: GGGAATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGAGGACCTTTTAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR GCA 72 bp CATAATGTACATACACTTGGTCTCTTTAAATTGGCATaGTTAACCCAAATAGGTGAGCTCACAATCAAAAAT +
Preference number: 3 (lower is better)
Translates to: HNVHTLGLFKLA*LTQIGELTIKN
Trigger: ATTTTTGATTGTGAGCTCACCTATTTGGGTTAAGCATGCCAATTTAAAGAGACCAAGTGTATGTACATTATG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGGGCTGCCAGCCGGCTaGCTTCTGGATAGGCGTCCG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLGLPAG*LLDRRP
Trigger: CGGACGCCTATCCAGAAGCCAGCCGGCTGGCAGCCC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGGGTAATGCTTGCGGGTaGGCCCGGGGCGGCGGGGAG +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQGNACG*ARGGGE
Trigger: CTCCCCGCCGCCCCGGGCCCACCCGCAAGCATTACC...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGTGATATTGAGCAGATaGGGGCTGCCAGCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLVILSR*GLPAGW
Trigger: CCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCAC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGCAGGCTGGAGAGCTGTaGCACTATCTCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLQAGEL*HYLGSL
Trigger: CAGTGAGCCGAGATAGTGCCACAGCTCTCCAGCCTG...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGCCTCACCCCAGGTCTTaGGAGAGTGTGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLPHPRS*ESVCHS
Trigger: AGAGTGACACACACTCTCTCAAGACCTGGGGTGAGG...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCGGTAATGCTTGCGGGTaGGCCCGGGGCGGCGGGGAG +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSGNACG*ARGGGE
Trigger: CTCCCCGCCGCCCCGGGCCCACCCGCAAGCATTACC...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGAGGGCACCTTCTGCCTaGCCACTTCTGGAAGATTGT +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLRAPSA*PLLEDC
Trigger: ACAATCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGAGCATGAACAAATGGTaGGGGCCACTGAAGGGCCAT +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLSMNKW*GPLKGH
Trigger: ATGGCCCTTCAGTGGCCCTCACCATTTGTTCATGCT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCTCAGGAGCGATAGGCTaGGAAGTCGCGTGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVSGAIG*EVAWWG
Trigger: GCCCCACCACGCGACTTCGCAGCCTATCGCTCCTGA...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCAGCCGGCTGGCTTCTaGATAGGCGTCCGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVQPAGF*IGVRVR
Trigger: CCTGACACGGACGCCTATCCAGAAGCCAGCCGGCTG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGT +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQNRGLR*PAGDGG
Trigger: ACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGAACAGGGGCCTGAGGTaGCCGGCTGGAGATGGCGGT +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMNRGLR*PAGDGG
Trigger: ACCGCCATCTCCAGCCGGCCACCTCAGGCCCCTGTT...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGAGAAAAATTGGCATTaGTGGCCCAACAGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLEKNWH*WPNRGL
Trigger: CAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp TTGATATTTGGTCTAGTCACTCGAGAAAAATTGGCATaGGTGGCCCAACAGGGGCCTGAGGTGGCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LIFGLVTREKLA*VAQQGPEVAGW
Trigger: CCAGCCGGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGACTAGACCAAATATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp CACCAGGGCACCTTCTGCCTGACCACTTCTGGAAGATaGTCACCTAATGCTGGCTATCTCCTCAGCACATGG +
Preference number: 4 (lower is better)
Translates to: HQGTFCLTTSGR*SPNAGYLLSTW
Trigger: CCATGTGCTGAGGAGATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTCAGGAGCGATAGGCTaGGAAGTCGCGTGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQSGAIG*EVAWWG
Trigger: GCCCCACCACGCGACTTCGCAGCCTATCGCTCCTGA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCAGCCGGCTGGCTTCTaGATAGGCGTCCGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPQPAGF*IGVRVR
Trigger: CCTGACACGGACGCCTATCCAGAAGCCAGCCGGCTG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCGTGATATTGAGCAGATaGGGGCTGCCAGCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVVILSR*GLPAGW
Trigger: CCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCAC...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGTGGATACCACACTTTaGTTGACTGAGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLVDTTL*LTEMCR
Trigger: CCTGCACATCTCAGTCAAGCAAAGTGTGGTATCCAC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTTGAAGAACTCTGTGTaGCCAAGAAGCTGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLLKNSV*PRSWQV
Trigger: CACTTGCCAGCTTCTTGGGCACACAGAGTTCTTCAA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTTATATACCAGGCACTaGTCTGGGCACTGGAGATAC +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLLYTRH*SGHWRY
Trigger: GTATCTCCAGTGCCCAGAGCAGTGCCTGGTATATAA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGGGCTGCCAGCCGGCTaGCTTCTGGATAGGCGTCCG +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSGLPAG*LLDRRP
Trigger: CGGACGCCTATCCAGAAGCCAGCCGGCTGGCAGCCC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCCTGAGGTGGCCGGCTaGAGATGGCGGTCATTTCCT +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMPEVAG*RWRSFP
Trigger: AGGAAATGACCGCCATCTCCAGCCGGCCACCTCAGG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTGGCACTGTAAGACTTaGCCTGTCACAGGAAATCTC +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLWHCKT*PVTGNL
Trigger: GAGATTTCCTGTGACAGGCCAAGTCTTACAGTGCCA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGAGGGAATCCCTCATTTaGCCAAATCCCTCATTTGGT +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLRESLI*PNPSFG
Trigger: ACCAAATGAGGGATTTGGTCAAATGAGGGATTCCCT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCCTCACCCCAGGTCTTaGGAGAGTGTGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVPHPRS*ESVCHS
Trigger: AGAGTGACACACACTCTCTCAAGACCTGGGGTGAGG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGCACTGTGCAGGAGCCTaGTCCTCTTACTCCTCACCC +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQHCAGA*SSYSSP
Trigger: GGGTGAGGAGTAAGAGGAGCAGGCTCCTGCACAGTG...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCACCAGGGCACCTTCTaGCTGACCACTTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVHQGTF*LTTSGR
Trigger: TCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCTGGTG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGGCTGCGAAGTCGCGTaGTGGGGCATAGGGCTGGTA +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKGCEVA*WGIGLV
Trigger: TACCAGCCCTATGCCCCACCACGCGACTTCGCAGCC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAGCCTCTTGGGCAGCTaGGATTACAGGTGCCTGCCA +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPSLLGS*DYRCLP
Trigger: TGGCAGGCACCTGTAATCCCAGCTGCCCAAGAGGCT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGAGCCTCTTGGGCAGCTaGGATTACAGGTGCCTGCCA +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMSLLGS*DYRCLP
Trigger: TGGCAGGCACCTGTAATCCCAGCTGCCCAAGAGGCT...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGCTCTGTCGCCCAGGCTaGAGAGCTGTGGCACTATCT +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQLCRPG*RAVALS
Trigger: AGATAGTGCCACAGCTCTCCAGCCTGGGCGACAGAG...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGGTGTGCCCAAGAAGCTaGCAAGTGGCACACGTGCCA +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQVCPRS*QVAHVP
Trigger: TGGCACGTGTGCCACTTGCCAGCTTCTTGGGCACAC...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAGGGCACCTTCTGCCTaGCCACTTCTGGAAGATTGT +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVRAPSA*PLLEDC
Trigger: ACAATCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAATGGTGAGGGCCACTaGAGGGCCATTCTTCAAGGT +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVNGEGH*RAILQG
Trigger: ACCTTGAAGAATGGCCCTTCAGTGGCCCTCACCATT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCAAGTGTGAGGGGAACTaGAAGACGCACCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPKCEGN*KTHLPR
Trigger: CCTTGGCAGGTGCGTCTTTCAGTTCCCCTCACACTT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR GCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCACAAGCATGAGCCACTaGGCCAGGTCCCATAGTACT +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVTSMSH*ARSHST
Trigger: AGTACTATGGGACCTGGCGCAGTGGCTCATGCTTGT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGATAGCACCTCATCCCTaGGTAGTGGGTTTAAATTTG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLIAPHP*VVGLNL
Trigger: CAAATTTAAACCCACTACGCAGGGATGAGGTGCTAT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGTAGAAAAATATCCATaGTCATTTCAGGGTCAGGCC +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLVEKYP*SFQGQA
Trigger: GGCCTGACCCTGAAATGACCATGGATATTTTTCTAC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp ATGATCTTGATATTTGGTCTAGTCACTCGAGAAAAATaGGCATTGGTGGCCCAACAGGGGCCTGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: MILIFGLVTREK*ALVAQQGPEVA
Trigger: GGCCACCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGACTAGACCAAATATCAAGATCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGAATGGTGAGGGCCACTaGAGGGCCATTCTTCAAGGT +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQNGEGH*RAILQG
Trigger: ACCTTGAAGAATGGCCCTTCAGTGGCCCTCACCATT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGCACCTGCCAAGGCCTaGGAGTCTCCGTCATCCACG +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPAPAKA*ESPSST
Trigger: CGTGGATGACGGAGACTCTCAGGCCTTGGCAGGTGC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR GCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCACTGTGCAGGAGCCTaGTCCTCTTACTCCTCACCC +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSHCAGA*SSYSSP
Trigger: GGGTGAGGAGTAAGAGGAGCAGGCTCCTGCACAGTG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTGTTTCCCTTTCACATaGATAATGGTTCCATTGCTC +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLCFPFT*IMVPLL
Trigger: GAGCAATGGAACCATTATCCATGTGAAAGGGAAACA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGGCTGCGAAGTCGCGTaGTGGGGCATAGGGCTGGTA +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPGCEVA*WGIGLV
Trigger: TACCAGCCCTATGCCCCACCACGCGACTTCGCAGCC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCTCTGTCGCCCAGGCTaGAGAGCTGTGGCACTATCT +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSLCRPG*RAVALS
Trigger: AGATAGTGCCACAGCTCTCCAGCCTGGGCGACAGAG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCAAGAAGCTGGCAAGTaGCACACGTGCCAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMQEAGK*HTCQGK
Trigger: TTTACCCTGGCACGTGTGCCACTTGCCAGCTTCTTG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCGTGTGCCCAAGAAGCTaGCAAGTGGCACACGTGCCA +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSVCPRS*QVAHVP
Trigger: TGGCACGTGTGCCACTTGCCAGCTTCTTGGGCACAC...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp TATAGGAAAGAGAGACTTTCTGAGCCTCAAATGGCCTaGCAGATAACACAGACTCCCTCACCCCAGGTCTTG +
Preference number: 4 (lower is better)
Translates to: YRKERLSEPQMA*QITQTPSPQVL
Trigger: CAAGACCTGGGGTGAGGGAGTCTGTGTTATCTGCAAGGCCATTTGAGGCTCAGAAAGTCTCTCTTTCCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAGGTACAGGAGCAGCTaGGCCCAGAGTTTTGGAGCT +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSRYRSS*AQSFGA
Trigger: AGCTCCAAAACTCTGGGCTCAGCTGCTCCTGTACCT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCGAGGAACCCGAAGTGTaGGGGGAACTGAAAGACGCA +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSEEPEV*GELKDA
Trigger: TGCGTCTTTCAGTTCCCCTCACACTTCGGGTTCCTC...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR GCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCACTGAAAGACGCACCTaGCAAGGCCTGAGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSTERRT*QGLRVS
Trigger: GGAGACTCTCAGGCCTTGGCAGGTGCGTCTTTCAGT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCGTACGCTACAAGCATaGGCGACTGCTTCACCAAAA +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMRTLQA*ATASPK
Trigger: TTTTGGTGAAGCAGTCGCCCATGCTTGTAGCGTACG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTTGCGAAGTCGCGTGGTaGGGCATAGGGCTGGTAATG +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSCEVAW*GIGLVM
Trigger: CATTACCAGCCCTATGCCCCACCACGCGACTTCGCA...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAGTCAAAGACAGACTTaGGCCATGCCCTTATGGAGA +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVSQRQT*AMPLWR
Trigger: TCTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTTGAATTTAACACTTTaGGATCAGTATCCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLLNLTL*DQYPGL
Trigger: CAGACCTGGATACTGATCCCAAAGTGTTAAATTCAA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCGAATTAACTGAAGCATaGACAAATGGTGAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVELTEA*TNGEGH
Trigger: GTGGCCCTCACCATTTGTTCATGCTTCAGTTAATTC...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAACAAGCATGAGCCACTaGGCCAGGTCCCATAGTACT +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKTSMSH*ARSHST
Trigger: AGTACTATGGGACCTGGCGCAGTGGCTCATGCTTGT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGGGATTACAGGTGCCTaGCACCAGGCCAAGCTAAAT +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKGITGA*HQAKLN
Trigger: ATTTAGCTTGGCCTGGTGGCAGGCACCTGTAATCCC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCACCAGGGCACCTTCTaGCTGACCACTTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSHQGTF*LTTSGR
Trigger: TCTTCCAGAAGTGGTCAGGCAGAAGGTGCCCTGGTG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGGCAAGTGGCACACGTaGCAGGGTAAATCCAACAGT +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKGKWHT*QGKSNS
Trigger: ACTGTTGGATTTACCCTGGCACGTGTGCCACTTGCC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAAAAAATTGGCATTGGTaGCCCAACAGGGGCCTGAGG +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKKNWHW*PNRGLR
Trigger: CCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
47% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAAAAATTGGCATTGGTaGCCCAACAGGGGCCTGAGG +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSKNWHW*PNRGLR
Trigger: CCTCAGGCCCCTGTTGGGCCACCAATGCCAATTTTT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGAGAAAAATTGGCATTaGTGGCCCAACAGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKEKNWH*WPNRGL
Trigger: CAGGCCCCTGTTGGGCCACCAATGCCAATTTTTCTC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTCACTCGAGAAAAATTaGCATTGGTGGCCCAACAGG +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPSLEKN*HWWPNR
Trigger: CCTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCAAGTACATGGTAAGTTaGAATGTGGGCCATGGCACT +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVKYMVS*NVGHGT
Trigger: AGTGCCATGGCCCACATTCCAACTTACCATGTACTT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACAGGCTGGAGAGCTGTaGCACTATCTCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPQAGEL*HYLGSL
Trigger: CAGTGAGCCGAGATAGTGCCACAGCTCTCCAGCCTG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTTCTCACTTCTCCTATaGACGCTCTTTCCACAACCC +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQFSLLL*TLFPQP
Trigger: GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTTCTCACTTCTCCTATaGACGCTCTTTCCACAACCC +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPFSLLL*TLFPQP
Trigger: GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCACTTTCCCATGTGAATaGACCTCCAAGGTACAGGAG +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPTFPCE*TSKVQE
Trigger: CTCCTGTACCTTGGAGGTCCATTCACATGGGAAAGT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp TCACTTCTCCTATGGACGCTCTTTCCACAACCCACTTaGGATCTCCACACCGACATTAAAGAGACCAACTGT +
Preference number: 4 (lower is better)
Translates to: SLLLWTLFPQPT*DLHTDIKETNC
Trigger: ACAGTTGGTCTCTTTAATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACTATCCAGTCCTTTGTaGAGGGATGCCCGGAACTCC +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPLSSPL*RDARNS
Trigger: GGAGTTCCGGGCATCCCTTCACAAAGGACTGGATAG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR TCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGAGGTAGAATGTCACTaGTTCATTGCCCAATTTCCC +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMEVECH*FIAQFP
Trigger: GGGAAATTGGGCAATGAATCAGTGACATTCTACCTC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR TCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGACGTGGCTCATTTCATaGGTGGGAGACAGTGTTTTA +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMTWLIS*VGDSVL
Trigger: TAAAACACTGTCTCCCACTCATGAAATGAGCCACGT...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCGCAACTTGGTTTACCTaGTATTGCTTTGAGGGAATC +
Preference number: 4 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVATWFT*YCFEGI
Trigger: GATTCCCTCAAAGCAATATCAGGTAAACCAAGTTGC...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGAGAGTTTTGGAGCTCTaGGCCCTAAACCACATAAAG +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQRVLEL*ALNHIK
Trigger: CTTTATGTGGTTTAGGGCTCAGAGCTCCAAAACTCT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAAGGTACAGGAGCAGCTaGGCCCAGAGTTTTGGAGCT +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPRYRSS*AQSFGA
Trigger: AGCTCCAAAACTCTGGGCTCAGCTGCTCCTGTACCT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTAGCATGAACAAATGGTaGGGGCCACTGAAGGGCCAT +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSSMNKW*GPLKGH
Trigger: ATGGCCCTTCAGTGGCCCTCACCATTTGTTCATGCT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGCATGCCTGTGATGGTTaGGTATTCCTGATACATTCC +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQHACDG*VFLIHS
Trigger: GGAATGTATCAGGAATACTCAACCATCACAGGCATG...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAGGTGGGCAGTGACTTaGCTGAGGCTATTCAACTAC +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSRWAVT*LRLFNY
Trigger: GTAGTTGAATAGCCTCAGGCAAGTCACTGCCCACCT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAATTGGAATGTGGGCCATaGCACTGTAAGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKLECGP*HCKTWP
Trigger: AGGCCAAGTCTTACAGTGCCATGGCCCACATTCCAA...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCTTGGAATGTGGGCCATaGCACTGTAAGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSLECGP*HCKTWP
Trigger: AGGCCAAGTCTTACAGTGCCATGGCCCACATTCCAA...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGAAGTACATGGTAAGTTaGAATGTGGGCCATGGCACT +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQKYMVS*NVGHGT
Trigger: AGTGCCATGGCCCACATTCCAACTTACCATGTACTT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGAGGAAAGCTCCTACCTaGTCTGATTGGAATGAACTG +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMRKAPT*SDWNEL
Trigger: CAGTTCATTCCAATCAGACCAGGTAGGAGCTTTCCT...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTTCCACAACCCACTTTaGATCTCCACACCGACATTA +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPFHNPL*ISTPTL
Trigger: TAATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGGCAGTGCAAATGGCTaGGATAAGGGATCAGACATG +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKGSANG*DKGSDM
Trigger: CATGTCTGATCCCTTATCCCAGCCATTTGCACTGCC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCGTTGAACCCCGTTTTTaGGTAAACCTGAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSVEPRF*VNLKLL
Trigger: CAGCAGCTTCAGGTTTACTCAAAAACGGGGTTCAAC...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTCTGATAACTTGGATTaGAGAACTCTGTGTGCCCAA +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQSDNLD*RTLCAQ
Trigger: TTGGGCACACAGAGTTCTTCAATCCAAGTTATCAGA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGACAAGCATGGGCGACTaGTTCACCAAAATCTTGTTT +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQTSMGD*FTKILF
Trigger: AAACAAGATTTTGGTGAAGCAGTCGCCCATGCTTGT...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR GCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGTGGATACCACACTTTaGTTGACTGAGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKVDTTL*LTEMCR
Trigger: CCTGCACATCTCAGTCAAGCAAAGTGTGGTATCCAC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGGGATTACAGGTGCCTaGCACCAGGCCAAGCTAAAT +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPGITGA*HQAKLN
Trigger: ATTTAGCTTGGCCTGGTGGCAGGCACCTGTAATCCC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAATTGAAGAACTCTGTGTaGCCAAGAAGCTGGCAAGTG +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKLKNSV*PRSWQV
Trigger: CACTTGCCAGCTTCTTGGGCACACAGAGTTCTTCAA...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTCCAAAGAACCTTCTTaGGACTCATCCTCATACTCT +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPSKEPS*DSSSYS
Trigger: AGAGTATGAGGATGAGTCCCAAGAAGGTTCTTTGGA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCACTGCTCTGGGCACTaGAGATACAGCAAGAAACAA +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSHCSGH*RYSKKQ
Trigger: TTGTTTCTTGCTGTATCTCCAGTGCCCAGAGCAGTG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCATTTCCCATCACAGTTaGACCCCGTTTTTGAGTAAA +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPISHHS*TPFLSK
Trigger: TTTACTCAAAAACGGGGTTCAACTGTGATGGGAAAT...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR TCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAACGTGGCTCATTTCATaGGTGGGAGACAGTGTTTTA +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKTWLIS*VGDSVL
Trigger: TAAAACACTGTCTCCCACTCATGAAATGAGCCACGT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAATCTCATGACAGGGAGTaGGGAAAGCAACTTGGTTTA +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKSHDRE*GKQLGL
Trigger: TAAACCAAGTTGCTTTCCTCACTCCCTGTCATGAGA...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGAAAGAGAGACTTTCTaGGCCTCAAATGGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSERETF*ASNGLA
Trigger: TGCAAGGCCATTTGAGGCTCAGAAAGTCTCTCTTTC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAAGGTGGGCAGTGACTTaGCTGAGGCTATTCAACTAC +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPRWAVT*LRLFNY
Trigger: GTAGTTGAATAGCCTCAGGCAAGTCACTGCCCACCT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCCTACCTGGTCTGATTaGAATGAACTGTTAGACAAA +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPPTWSD*NELLDK
Trigger: TTTGTCTAACAGTTCATTCCAATCAGACCAGGTAGG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTAGTCAAAGACAGACTTaGGCCATGCCCTTATGGAGA +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSSQRQT*AMPLWR
Trigger: TCTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCTCAAGATCCTGGTTCTaGGTCCTTTATTGGCACCAT +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSSRSWF*VLYWHH
Trigger: ATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGA...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCACTGCTCTGGGCACTaGAGATACAGCAAGAAACAA +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSHCSGH*RYSKKQ
Trigger: TTGTTTCTTGCTGTATCTCCAGTGCCCAGAGCAGTG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp ATCCAACAGTTCTTCAGCACCCAAGTACTGCTGAGTTaGATCTTCTTGGGACTGATTAAATCCATGGAATGG +
Preference number: 4 (lower is better)
Translates to: IQQFFSTQVLLS*IFLGLIKSMEW
Trigger: CCATTCCATGGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAACTGTTGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAAAATACTTTCCCATGTaGATGGACCTCCAAGGTACA +
Preference number: 4 (lower is better)
Translates to: PQHMARISLLHSIRPPSKKYFPM*MDLQGT
Trigger: TGTACCTTGGAGGTCCATTCACATGGGAAAGTATTT...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp GAATTTAACACTTTGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGCTGGCAGTCCTACCACTGTTTTTaGACCATTTCTTGGTTCATA +
Preference number: 4 (lower is better)
Translates to: EFNTLGSVSRSGIVPSWQSYHCF*TISWFI
Trigger: TATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGA...CTGCCAGCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGAAAGAGAGACTTTCTaGGCCTCAAATGGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPERETF*ASNGLA
Trigger: TGCAAGGCCATTTGAGGCTCAGAAAGTCTCTCTTTC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGTGTTTCCCTGTTACTTaGATTGAAGGGAATAAGTTG +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMCFPVT*IEGNKL
Trigger: CAACTTATTCCCTTCAATTCAAGTAACAGGGAAACA...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGGCAAGTGGCACACGTaGCAGGGTAAATCCAACAGT +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYGKWHT*QGKSNS
Trigger: ACTGTTGGATTTACCCTGGCACGTGTGCCACTTGCC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCTCTTTAAATTGGCATaGTTAACCCAAATAGGTGAG +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMLFKLA*LTQIGE
Trigger: CTCACCTATTTGGGTTAAGCATGCCAATTTAAAGAG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCTCTATCCAAATTCCTTaGCAAAGCGAAGCATATCTA +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPSIQIP*QSEAYL
Trigger: TAGATATGCTTCGCTTTGGCAAGGAATTTGGATAGA...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATTATATACCAGGCACTaGTCTGGGCACTGGAGATAC +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPLYTRH*SGHWRY
Trigger: GTATCTCCAGTGCCCAGAGCAGTGCCTGGTATATAA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATGGCACTGTAAGACTTaGCCTGTCACAGGAAATCTC +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPWHCKT*PVTGNL
Trigger: GAGATTTCCTGTGACAGGCCAAGTCTTACAGTGCCA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAACTTTCCCATGTGAATaGACCTCCAAGGTACAGGAG +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPTFPCE*TSKVQE
Trigger: CTCCTGTACCTTGGAGGTCCATTCACATGGGAAAGT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGTTGAATTTAACACTTTaGGATCAGTATCCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMLNLTL*DQYPGL
Trigger: CAGACCTGGATACTGATCCCAAAGTGTTAAATTCAA...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp ATCTCTAATCTCCAGCATGTAGTTGAATTTAACACTTaGGGATCAGTATCCAGGTCTGGTATAGTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: ISNLQHVVEFNT*GSVSRSGIVPS
Trigger: GCTGGGAACTATACCAGACCTGGATACTGATCCCAAAGTGTTAAATTCAACTACATGCTGGAGATTAGAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp TCACCCCAGGTCTTGAGAGAGTGTGTGTCACTCTCTTaGACCTGGATTATTAATAAGTCTATAGCAATCAAG +
Preference number: 4 (lower is better)
Translates to: SPQVLRECVSLS*TWIINKSIAIK
Trigger: CTTGATTGCTATAGACTTATTAATAATCCAGGTCAAAGAGAGTGACACACACTCTCTCAAGACCTGGGGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATCACACTTTGCTTGACTaGGATGTGCAGGTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYHTLLD*DVQVSE
Trigger: CTCACTCACCTGCACATCTCAGTCAAGCAAAGTGTG...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAAGAGTTTTGGAGCTCTaGGCCCTAAACCACATAAAG +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPRVLEL*ALNHIK
Trigger: CTTTATGTGGTTTAGGGCTCAGAGCTCCAAAACTCT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAGAATTAACTGAAGCATaGACAAATGGTGAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPELTEA*TNGEGH
Trigger: GTGGCCCTCACCATTTGTTCATGCTTCAGTTAATTC...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCATAAAAGTGGGAGGTaGCTTATATTTCATTACAAG +
Preference number: 4 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPHKSGR*LIFHYK
Trigger: CTTGTAATGAAATATAAGGCACCTCCCACTTTTATG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAACAAGGCATCCTGACTaGAGCATTTCACACAGGATA +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPTRHPD*SISHRI
Trigger: TATCCTGTGTGAAATGCTGCAGTCAGGATGCCTTGT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS-3UTR CCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCCTACCTGGTCTGATTaGAATGAACTGTTAGACAAA +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSPTWSD*NELLDK
Trigger: TTTGTCTAACAGTTCATTCCAATCAGACCAGGTAGG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGTACAATCTGATAACTTaGATTGAAGAACTCTGTGTG +
Preference number: 4 (lower is better)
Translates to: IKILVLGPLLAPSLISSMYNLIT*IEELCV
Trigger: CACACAGAGTTCTTCAATCCAAGTTATCAGATTGTA...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGGCAGTGCAAATGGCTaGGATAAGGGATCAGACATG +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYGSANG*DKGSDM
Trigger: CATGTCTGATCCCTTATCCCAGCCATTTGCACTGCC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATCAAGATCCTGGTTCTaGGTCCTTTATTGGCACCAT +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPSRSWF*VLYWHH
Trigger: ATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATCTGATAACTTGGATTaGAGAACTCTGTGTGCCCAA +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPSDNLD*RTLCAQ
Trigger: TTGGGCACACAGAGTTCTTCAATCCAAGTTATCAGA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCTCTTTAAATTGGCATaGTTAACCCAAATAGGTGAG +
Preference number: 4 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSLFKLA*LTQIGE
Trigger: CTCACCTATTTGGGTTAAGCATGCCAATTTAAAGAG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATCCAAAGAACCTTCTTaGGACTCATCCTCATACTCT +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPSKEPS*DSSSYS
Trigger: AGAGTATGAGGATGAGTCCCAAGAAGGTTCTTTGGA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATAGGGAATCCCTCATTTaGCCAAATCCCTCATTTGGT +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYRESLI*PNPSFG
Trigger: ACCAAATGAGGGATTTGGTCAAATGAGGGATTCCCT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTCTCATGACAGGGAGTaGGGAAAGCAACTTGGTTTA +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYSHDRE*GKQLGL
Trigger: TAAACCAAGTTGCTTTCCTCACTCCCTGTCATGAGA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTATGGTTGAGTATTCCTaGTACATTCCTATATGTCAG +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSMVEYS*YIPICQ
Trigger: CTGACATATAGGAATGTATCAGGAATACTCAACCAT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATCATGCCTGTGATGGTTaGGTATTCCTGATACATTCC +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYHACDG*VFLIHS
Trigger: GGAATGTATCAGGAATACTCAACCATCACAGGCATG...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATAGGAAAGCTCCTACCTaGTCTGATTGGAATGAACTG +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYRKAPT*SDWNEL
Trigger: CAGTTCATTCCAATCAGACCAGGTAGGAGCTTTCCT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp AAAGCATTGCTCCTACCACTGTTTTTGAACCATTTCTaGGTTCATACTAATAGTGAAAACGGACTTCCCTGT +
Preference number: 4 (lower is better)
Translates to: KALLLPLFLNHF*VHTNSENGLPC
Trigger: ACAGGGAAGTCCGTTTTCACTATTAGTATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGAGCAATGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATATAGCACCTCATCCCTaGGTAGTGGGTTTAAATTTG +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYIAPHP*VVGLNL
Trigger: CAAATTTAAACCCACTACGCAGGGATGAGGTGCTAT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGTAGAAAAATATCCATaGTCATTTCAGGGTCAGGCC +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYVEKYP*SFQGQA
Trigger: GGCCTGACCCTGAAATGACCATGGATATTTTTCTAC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTACAGTATTTTCGATCTaGAATCTCAAGATTCCTACT +
Preference number: 4 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSTVFSI*NLKIPT
Trigger: AGTAGGAATCTTGAGATTCCAGATCGAAAATACTGT...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGAAACATCTCAAGTGTaGTTCATCTTTAGTAGGCCT +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYETSQV*FIFSRP
Trigger: AGGCCTACTAAAGATGAATCACACTTGAGATGTTTC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CCA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATACAATCTGATAACTTaGATTGAAGAACTCTGTGTG +
Preference number: 4 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPYNLIT*IEELCV
Trigger: CACACAGAGTTCTTCAATCCAAGTTATCAGATTGTA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTCCTACCACTGTTTTTaGACCATTTCTTGGTTCATA +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYSYHCF*TISWFI
Trigger: TATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR TCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATATGGTTGAGTATTCCTaGTACATTCCTATATGTCAG +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYMVEYS*YIPICQ
Trigger: CTGACATATAGGAATGTATCAGGAATACTCAACCAT...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR GCA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTCTATCCAAATTCCTTaGCAAAGCGAAGCATATCTA +
Preference number: 4 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYSIQIP*QSEAYL
Trigger: TAGATATGCTTCGCTTTGGCAAGGAATTTGGATAGA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
3UTR CAA 72 bp TTCTTCATAACTACCATATCTGAAACTATGAAAGCATaGCTCCTACCACTGTTTTTGAACCATTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: FFITTISETMKA*LLPLFLNHFLV
Trigger: AACCAAGAAATGGTTCAAAAACAGTGGTAGGAGCAATGCTTTCATAGTTTCAGATATGGTAGTTATGAAGAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS GCA 90 bp CCTCCCCGAGGAACCCGAAGTGTGAGGGGAACTGAAAGACGCACCTaGCAAGGCCTGAGAGTCTCCGTCATCCACGGCCACCACCACCGC +
Preference number: 5 (lower is better)
Translates to: PPRGTRSVRGTERRT*QGLRVSVIHGHHHR
Trigger: GCGGTGGTGGTGGCCGTGGATGACGGAGACTCTCAGGCCTTGGCAGGTGCGTCTTTCAGTTCCCCTCACACTTCGGGTTCCTCGGGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS CCA 90 bp GGAGATGGCGGTCATTTCCTATCCAGAGCAGTGATATTGAGCAGATaGGGGCTGCCAGCCGGCTGGCTTCTGGATAGGCGTCCGTGTCAG +
Preference number: 5 (lower is better)
Translates to: GDGGHFLSRAVILSR*GLPAGWLLDRRPCQ
Trigger: CTGACACGGACGCCTATCCAGAAGCCAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGACCGCCATCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS GCA 90 bp GTACGCTACAAGCATGGGCGACTGCTTCACCAAAATCTTGTTTCCTaGCAAGGCCTGAGAGTCTCCGTCATCCACGGCCACCACCACCGC +
Preference number: 5 (lower is better)
Translates to: VRYKHGRLLHQNLVS*QGLRVSVIHGHHHR
Trigger: GCGGTGGTGGTGGCCGTGGATGACGGAGACTCTCAGGCCTTGGCAGGAAACAAGATTTTGGTGAAGCAGTCGCCCATGCTTGTAGCGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000458610.6
CDS-3UTR CAA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGGAGCCTCAAATGGCCTaGCAGATAACACAGACTCCC +
Preference number: 5 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLEPQMA*QITQTP
Trigger: GGGAGTCTGTGTTATCTGCAAGGCCATTTGAGGCTC...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGATGCCCGGAACTCCCTaGAGAAGAGATTGTAGGAAT +
Preference number: 5 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLMPGTP*RRDCRN
Trigger: ATTCCTACAATCTCTTCTCAAGGGAGTTCCGGGCAT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CAA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGTTCCAAAGAACCTTCTaGGGACTCATCCTCATACTC +
Preference number: 5 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLFQRTF*GLILIL
Trigger: GAGTATGAGGATGAGTCCCAAGAAGGTTCTTTGGAA...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGACCACTTCTGGAAGATaGTCACCTAATGCTGGCTAT +
Preference number: 5 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLTTSGR*SPNAGY
Trigger: ATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCCCTCACCCCAGGTCTaGAGAGAGTGTGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: IKILVLGPLLAPSLISSMPSPQV*RECVSL
Trigger: GAGTGACACACACTCTCTCAAGACCTGGGGTGAGGG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS TCA 90 bp CACAGCACTATCCAGTCCTTTGTGAAGGGATGCCCGGAACTCCCTTaGGAAGAGATTGTAGGAATACTTGCAGCTAAGGTTGACCGCATT +
Preference number: 5 (lower is better)
Translates to: HSTIQSFVKGCPELP*EEIVGILAAKVDRI
Trigger: AATGCGGTCAACCTTAGCTGCAAGTATTCCTACAATCTCTTCTCAAGGGAGTTCCGGGCATCCCTTCACAAAGGACTGGATAGTGCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000458610.6
CDS-3UTR CAA 90 bp TCATTTCCTATCCAGAGCAGTGATATTGAGCAGATGGGGGCTGCCAGCCGGCTGAGTGAGGAAAGCAACTaGGTTTACCTGATATTGCTT +
Preference number: 5 (lower is better)
Translates to: SFPIQSSDIEQMGAASRLSEESN*VYLILL
Trigger: AAGCAATATCAGGTAAACCAAGTTGCTTTCCTCACT...CAGCCGGCTGGCAGCCCCCATCTGCTCAATATCACTGCTCTGGATAGGAAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGAGTCAAAGACAGACTaGGGCCATGCCCTTATGGAG +
Preference number: 5 (lower is better)
Translates to: IKILVLGPLLAPSLISSMESKTD*GHALME
Trigger: CTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACTC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCGAGTCAAAGACAGACTaGGGCCATGCCCTTATGGAG +
Preference number: 5 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPESKTD*GHALME
Trigger: CTCCATAAGGGCATGGCCCAAGTCTGTCTTTGACTC...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCTTTCCACAACCCACTTaGGATCTCCACACCGACATT +
Preference number: 5 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVFPQPT*DLHTDI
Trigger: AATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAA...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCGAGGGAATCCCTCATTaGACCAAATCCCTCATTTGG +
Preference number: 5 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPEGIPH*TKSLIW
Trigger: CCAAATGAGGGATTTGGTCAAATGAGGGATTCCCTC...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGAGGGAATCCCTCATTaGACCAAATCCCTCATTTGG +
Preference number: 5 (lower is better)
Translates to: IKILVLGPLLAPSLISSMEGIPH*TKSLIW
Trigger: CCAAATGAGGGATTTGGTCAAATGAGGGATTCCCTC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCACCACTTCTGGAAGATaGTCACCTAATGCTGGCTAT +
Preference number: 5 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVTTSGR*SPNAGY
Trigger: ATAGCCAGCATTAGGTGACAATCTTCCAGAAGTGGT...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCGTTCTGGGTCCTTTATaGGCACCATCTCTAATCTCC +
Preference number: 5 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPVLGPL*APSLIS
Trigger: GGAGATTAGAGATGGTGCCAATAAAGGACCCAGAAC...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCACCCTCACCCCAGGTCTaGAGAGAGTGTGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPPSPQV*RECVSL
Trigger: GAGTGACACACACTCTCTCAAGACCTGGGGTGAGGG...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCGGGAAATAGGGGACTaGGACAAAGGTGTTTCCCTG +
Preference number: 5 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSREIGD*DKGVSL
Trigger: CAGGGAAACACCTTTGTCCAAGTCCCCTATTTCCCG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS TCA 90 bp GGAGGTAGAATGTCACTGATTCATTGCCCAATTTCCCATCACAGTTaGACCCCGTTTTTGAGTAAACCTGAAGCTGCTGGGAGTAATTCC +
Preference number: 5 (lower is better)
Translates to: GGRMSLIHCPISHHS*TPFLSKPEAAGSNS
Trigger: GGAATTACTCCCAGCAGCTTCAGGTTTACTCAAAAACGGGGTTCAACTGTGATGGGAAATTGGGCAATGAATCAGTGACATTCTACCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000458610.6
CDS-3UTR CAA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCCTAAGGTTGACCGCATaGTCGTACGCTACAAGCATG +
Preference number: 5 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSLRLTA*SYATSM
Trigger: CATGCTTGTAGCGTACGACAATGCGGTCAACCTTAG...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCGGGAAATAGGGGACTaGGACAAAGGTGTTTCCCTT +
Preference number: 5 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSREIGD*DKGVSL
Trigger: AAGGGAAACACCTTTGTCCAAGTCCCCTATTTCCCG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CAA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCCAAGTACTGCTGAGTTaGATCTTCTTGGGACTGATT +
Preference number: 5 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPQVLLS*IFLGLI
Trigger: AATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTG...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGGAATCCACTCCCTTTTaGTTTTCTACCCTAACTTCT +
Preference number: 5 (lower is better)
Translates to: IKILVLGPLLAPSLISSMESTPF*FSTLTS
Trigger: AGAAGTTAGGGTAGAAAACAAAAAGGGAGTGGATTC...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CATCCCTTTTTCACAGTATTCTCACTTCTCCTATGGACGCTCTTTCCACAACCCGAATCCACTCCCTTTTaGTTTTCTACCCTAACTTCT +
Preference number: 5 (lower is better)
Translates to: HPFFTVFSLLLWTLFPQPESTPF*FSTLTS
Trigger: AGAAGTTAGGGTAGAAAACAAAAAGGGAGTGGATTC...GGGTTGTGGAAAGAGCGTCCATAGGAGAAGTGAGAATACTGTGAAAAAGGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAATTCCAAAGAACCTTCTaGGGACTCATCCTCATACTC +
Preference number: 5 (lower is better)
Translates to: PQHMARISLLHSIRPPSKFQRTF*GLILIL
Trigger: GAGTATGAGGATGAGTCCCAAGAAGGTTCTTTGGAA...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ACAGAACACATAGGTAAGCCTAGCCTGACATCTCAAAGAGGTCAGCCATTGGTCCCCCTTCTTAGGCTATaGCCCAGTTTAATTTTTATA +
Preference number: 5 (lower is better)
Translates to: TEHIGKPSLTSQRGQPLVPLLRL*PSLIFI
Trigger: TATAAAAATTAAACTGGGCAATAGCCTAAGAAGGGG...GACCAATGGCTGACCTCTTTGAGATGTCAGGCTAGGCTTACCTATGTGTTCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp ATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCTAATCTCCAGCATGCTCCTACCACTGTTTTaGAACCATTTCTTGGTTCAT +
Preference number: 5 (lower is better)
Translates to: IKILVLGPLLAPSLISSMLLPLF*NHFLVH
Trigger: ATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGAG...CATGCTGGAGATTAGAGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTGTTCTGGGTCCTTTATaGGCACCATCTCTAATCTCC +
Preference number: 5 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSVLGPL*APSLIS
Trigger: GGAGATTAGAGATGGTGCCAATAAAGGACCCAGAAC...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCAATTGAAGGGAATAAGTaGAGAGCCAAGAGCAGCCTG +
Preference number: 5 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPIEGNK*RAKSSL
Trigger: CAGGCTGCTCTTGGCTCTCAACTTATTCCCTTCAAT...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATTTCCACAACCCACTTaGGATCTCCACACCGACATT +
Preference number: 5 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPFPQPT*DLHTDI
Trigger: AATGTCGGTGTGGAGATCCAAAGTGGGTTGTGGAAA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGAGCCTCAAATGGCCTaGCAGATAACACAGACTCCC +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYEPQMA*QITQTP
Trigger: GGGAGTCTGTGTTATCTGCAAGGCCATTTGAGGCTC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTACTTGCAGCTAAGGTaGACCGCATTGTCGTACGCT +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYYLQLR*TALSYA
Trigger: AGCGTACGACAATGCGGTCAACCTTAGCTGCAAGTA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGTCACTCGAGAAAAATaGGCATTGGTGGCCCAACAG +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYVTREK*ALVAQQ
Trigger: CTGTTGGGCCACCAATGCCAATTTTTCTCGAGTGAC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TTCTTCAGCACCCAAGTACTGCTGAGTTTGATCTTCTTGGGACTGATTAAATCCAGTGAGGAAAGCAACTaGGTTTACCTGATATTGCTT +
Preference number: 5 (lower is better)
Translates to: FFSTQVLLSLIFLGLIKSSEESN*VYLILL
Trigger: AAGCAATATCAGGTAAACCAAGTTGCTTTCCTCACT...GGATTTAATCAGTCCCAAGAAGATCAAACTCAGCAGTACTTGGGTGCTGAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAACTGAGTTTGATCTTCTaGGGACTGATTAAATCCATG +
Preference number: 5 (lower is better)
Translates to: PQHMARISLLHSIRPPSKLSLIF*GLIKSM
Trigger: CATGGATTTAATCAGTCCCAAGAAGATCAAACTCAG...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp CCTCAGCACATGGCAAGAATTTCATTACTCCATTCTATTCGTCCTCCTTCCAAAGAAACTATGAAAGCATaGCTCCTACCACTGTTTTTG +
Preference number: 5 (lower is better)
Translates to: PQHMARISLLHSIRPPSKETMKA*LLPLFL
Trigger: CAAAAACAGTGGTAGGAGCAATGCTTTCATAGTTTC...TTTGGAAGGAGGACGAATAGAATGGAGTAATGAAATTCTTGCCATGTGCTGAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATGGATAATGGTTCCATaGCTCTTCTCATTGTCTAGG +
Preference number: 5 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPWIMVP*LFSLSR
Trigger: CCTAGACAATGAGAAGAGCAATGGAACCATTATCCA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000324106.9
CDS-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTCCCCTTCTTAGGCTATaGCCCAGTTTAATTTTTATA +
Preference number: 5 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSPLLRL*PSLIFI
Trigger: TATAAAAATTAAACTGGGCAATAGCCTAAGAAGGGG...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AATAAGTCTATAGCAATCAAGATCCTGGTTCTGGGTCCTTTATTGGCACCATCTTGTGTGTCACTCTCTTaGACCTGGATTATTAATAAG +
Preference number: 5 (lower is better)
Translates to: NKSIAIKILVLGPLLAPSCVSLS*TWIINK
Trigger: CTTATTAATAATCCAGGTCAAAGAGAGTGACACACA...AGATGGTGCCAATAAAGGACCCAGAACCAGGATCTTGATTGCTATAGACTTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp AGGATTTACCCCACACCTCTTTTAAATAGCAAGTTCTATCCAAATTCCTTGCCATGTGTGTCACTCTCTTaGACCTGGATTATTAATAAG +
Preference number: 5 (lower is better)
Translates to: RIYPTPLLNSKFYPNSLPCVSLS*TWIINK
Trigger: CTTATTAATAATCCAGGTCAAAGAGAGTGACACACA...TGGCAAGGAATTTGGATAGAACTTGCTATTTAAAAGAGGTGTGGGGTAAATCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATCTCCTACCACTGTTTTaGAACCATTTCTTGGTTCAT +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYLLPLF*NHFLVH
Trigger: ATGAACCAAGAAATGGTTCAAAAACAGTGGTAGGAG...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATGAAACTATGAAAGCATaGCTCCTACCACTGTTTTTG +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYETMKA*LLPLFL
Trigger: CAAAAACAGTGGTAGGAGCAATGCTTTCATAGTTTC...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS-3UTR CAA 90 bp TCATATTATAGCACCTCATCCCTGCGTAGTGGGTTTAAATTTGTGTTACAATATTTCTATCCAAATTCCTaGCCAAAGCGAAGCATATCT +
Preference number: 5 (lower is better)
Translates to: SYYSTSSLRSGFKFVLQYFYPNS*PKRSIS
Trigger: AGATATGCTTCGCTTTGGCAAGGAATTTGGATAGAA...ATATTGTAACACAAATTTAAACCCACTACGCAGGGATGAGGTGCTATAATATGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS CCA 72 bp TCCGTGTCAGGAGCGATAGGCTGCGAAGTCGCGTGGTaGGGCATAGGGCTGGTAATGCTTGCGGGTGGGCCC +
Preference number: 6 (lower is better)
Translates to: SVSGAIGCEVAW*GIGLVMLAGGP
Trigger: GGGCCCACCCGCAAGCATTACCAGCCCTATGCCCCACCACGCGACTTCGCAGCCTATCGCTCCTGACACGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS CCA 72 bp GCGTCCGTGTCAGGAGCGATAGGCTGCGAAGTCGCGTaGTGGGGCATAGGGCTGGTAATGCTTGCGGGTGGG +
Preference number: 6 (lower is better)
Translates to: ASVSGAIGCEVA*WGIGLVMLAGG
Trigger: CCCACCCGCAAGCATTACCAGCCCTATGCCCCACCACGCGACTTCGCAGCCTATCGCTCCTGACACGGACGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000374481.7
CDS TCA 72 bp CCCTCCTCCCCGAGGAACCCGAAGTGTGAGGGGAACTaGAAGACGCACCTGCCAAGGCCTGAGAGTCTCCGT +
Preference number: 6 (lower is better)
Translates to: PSSPRNPKCEGN*KTHLPRPESLR
Trigger: ACGGAGACTCTCAGGCCTTGGCAGGTGCGTCTTTCAGTTCCCCTCACACTTCGGGTTCCTCGGGGAGGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS GCA 72 bp GGAACCCGAAGTGTGAGGGGAACTGAAAGACGCACCTaGCAAGGCCTGAGAGTCTCCGTCATCCACGGCCAC +
Preference number: 6 (lower is better)
Translates to: GTRSVRGTERRT*QGLRVSVIHGH
Trigger: GTGGCCGTGGATGACGGAGACTCTCAGGCCTTGGCAGGTGCGTCTTTCAGTTCCCCTCACACTTCGGGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374481.7
CDS GCA 72 bp AAGCATGGGCGACTGCTTCACCAAAATCTTGTTTCCTaGCAAGGCCTGAGAGTCTCCGTCATCCACGGCCAC +
Preference number: 6 (lower is better)
Translates to: KHGRLLHQNLVS*QGLRVSVIHGH
Trigger: GTGGCCGTGGATGACGGAGACTCTCAGGCCTTGGCAGGAAACAAGATTTTGGTGAAGCAGTCGCCCATGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000458610.6
CDS TCA 72 bp ATCCAGTCCTTTGTGAAGGGATGCCCGGAACTCCCTTaGGAAGAGATTGTAGGAATACTTGCAGCTAAGGTT +
Preference number: 6 (lower is better)
Translates to: IQSFVKGCPELP*EEIVGILAAKV
Trigger: AACCTTAGCTGCAAGTATTCCTACAATCTCTTCTCAAGGGAGTTCCGGGCATCCCTTCACAAAGGACTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000458610.6
CDS TCA 72 bp ATGTCACTGATTCATTGCCCAATTTCCCATCACAGTTaGACCCCGTTTTTGAGTAAACCTGAAGCTGCTGGG +
Preference number: 6 (lower is better)
Translates to: MSLIHCPISHHS*TPFLSKPEAAG
Trigger: CCCAGCAGCTTCAGGTTTACTCAAAAACGGGGTTCAACTGTGATGGGAAATTGGGCAATGAATCAGTGACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000458610.6
CDS TCA 72 bp ATTGCCCAATTTCCCATCACAGTTGAACCCCGTTTTTaGGTAAACCTGAAGCTGCTGGGAGTAATTCCCATA +
Preference number: 6 (lower is better)
Translates to: IAQFPITVEPRF*VNLKLLGVIPI
Trigger: TATGGGAATTACTCCCAGCAGCTTCAGGTTTACTCAAAAACGGGGTTCAACTGTGATGGGAAATTGGGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324106.9
ENST00000458610.6