Pregenerated sensors for CCNQ (Homo sapiens)
Ensembl gene IDs: ENSG00000262919Ensembl transcript IDs: ENST00000482182.3, ENST00000621817.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGTCCTCACGTGGCCTTCTCTGACGGTGACTCCTCCTaGCTTTGCCTTATAAGGATGGGTGTGGTTACACCC | + |
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Preference number: 3 (lower is better) Translates to: CPHVAFSDGDSS*LCLIRMGVVTP Trigger: GGGTGTAACCACACCCATCCTTATAAGGCAAAGGCAGGAGGAGTCACCGTCAGAGAAGGCCACGTGAGGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| 3UTR CCA 72 bp | ATCTTCAAAGCTTCTAACTCTGCTTCTGTCCTCACGTaGCCTTCTCTGACGGTGACTCCTCCTGCCTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: IFKASNSASVLT*PSLTVTPPAFA Trigger: GGCAAAGGCAGGAGGAGTCACCGTCAGAGAAGGCCACGTGAGGACAGAAGCAGAGTTAGAAGCTTTGAAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR GCA 90 bp | GCTTCTAACTCTGCTTCTGTCCTCACGTGGCCTTCTCTGACGGTGACTCCTCCTGCTGCATTCCTTGGTTaGTGGCCCCTTCCTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: ASNSASVLTWPSLTVTPPAAFLG*WPLPPS Trigger: AGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGC...AGGAGGAGTCACCGTCAGAGAAGGCCACGTGAGGACAGAAGCAGAGTTAGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR GCA 90 bp | CTTCTAGAGGAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAACTTCTAGAGGAGGGCTaGATTCCTTGGTTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LLEEGCIPWLLAPSSIFKLLEEG*IPWLLA Trigger: GGCCAGCAACCAAGGAATGCAGCCCTCCTCTAGAAG...TTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTCCTCTAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR GCA 90 bp | GAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAAGCTTCTAACGACTCCTCCTGCCTTTaGCTTATAAGGATGGGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: EGCIPWLLAPSSIFKASNDSSCL*LIRMGV Trigger: CACACCCATCCTTATAAGGCAAAGGCAGGAGGAGTC...GTTAGAAGCTTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR GCA 90 bp | CTTCTAGAGGAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAACAATATTTAGCCTCCTaGCTCCATGATGAACCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: LLEEGCIPWLLAPSSIFKQYLAS*LHDEPR Trigger: GCGAGGTTCATCATGGAGGCAGGAGGCTAAATATTG...TTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTCCTCTAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR TCA 90 bp | GAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAAGCTTCTAACCCAGATAATCTAGGATaGTCTCCCATCTTAAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: EGCIPWLLAPSSIFKASNPDNLG*SPILRS Trigger: AGACCTTAAGATGGGAGATCATCCTAGATTATCTGG...GTTAGAAGCTTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR CAA 90 bp | GAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAAGCTTCTAACGGAGGGCTGCATTCCTaGGTTGCTGGCCCCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: EGCIPWLLAPSSIFKASNGGLHS*VAGPFL Trigger: GAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTCC...GTTAGAAGCTTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR CAA 90 bp | CTTCTAGAGGAGGGCTGCATTCCTTGGTTGCTGGCCCCTTCCTCCATCTTCAAAGGCTGCATTCCTTGGTaGCTGGCCCCTTCCTCCATC | + |
|
Preference number: 5 (lower is better) Translates to: LLEEGCIPWLLAPSSIFKGCIPW*LAPSSI Trigger: GATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCC...TTTGAAGATGGAGGAAGGGGCCAGCAACCAAGGAATGCAGCCCTCCTCTAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR CAA 90 bp | GCTTCTAACTCTGCTTCTGTCCTCACGTGGCCTTCTCTGACGGTGACTCCTCCTGACCGCATCCCTAGCTaGACACCTTTTCCAGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: ASNSASVLTWPSLTVTPPDRIPS*TPFPAS Trigger: AGAAGCTGGAAAAGGTGTCAAGCTAGGGATGCGGTC...AGGAGGAGTCACCGTCAGAGAAGGCCACGTGAGGACAGAAGCAGAGTTAGAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS-3UTR CAA 90 bp | GCTTCTAACTCTGCTTCTGTCCTCACGTGGCCTTCTCTGACGGTGACTCCTCCTAGGATAGGGACATCTTaGGGAAATCAATATTTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: ASNSASVLTWPSLTVTPPRIGTS*GNQYLA Trigger: GGCTAAATATTGATTTCCCAAAGATGTCCCTATCCT...AGGAGGAGTCACCGTCAGAGAAGGCCACGTGAGGACAGAAGCAGAGTTAGAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS CAA 72 bp | CATTCACAGGTTCCAGGGATTAGGATAGGGACATCTTaGGGAAATCAATATTTAGCCTCCTGCCTCCATGAT | + |
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Preference number: 6 (lower is better) Translates to: HSQVPGIRIGTS*GNQYLASCLHD Trigger: ATCATGGAGGCAGGAGGCTAAATATTGATTTCCCAAAGATGTCCCTATCCTAATCCCTGGAACCTGTGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621817.1 |
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| CDS CCA 72 bp | CCCAAAGGTACTCACTCCCAAGTTAGTGACAGTCACTaGAGTCATTCTGATACATTCAGATCATTGCTACAA | + |
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Preference number: 6 (lower is better) Translates to: PKGTHSQVSDSH*SHSDTFRSLLQ Trigger: TTGTAGCAATGATCTGAATGTATCAGAATGACTCCAGTGACTGTCACTAACTTGGGAGTGAGTACCTTTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000482182.3 |
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