Pregenerated sensors for CCNJ (Homo sapiens)

Ensembl gene IDs: ENSG00000107443

Ensembl transcript IDs: ENST00000265992.9, ENST00000403870.7, ENST00000465148.3

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCGCCGTCGTGCGGCGGACGCCGGCCCCGCTCATGCTGCGGACAGTaGGCCGCTAAGCGCCGGCCTCAGCTAGAGCCCAGCGCCTGGACG	+
Preference number: 5 (lower is better) Translates to: PPSCGGRRPRSCCGQ*AAKRRPQLEPSAWT Trigger: CGTCCAGGCGCTGGGCTCTAGCTGAGGCCGGCGCTTAGCGGCCCACTGTCCGCAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000265992.9 ENST00000403870.7 ENST00000465148.3
CDS GCA 72 bp	GCCCCGCCGTCGTGCGGCGGACGCCGGCCCCGCTCATaGTGCGGACAGTGGGCCGCTAAGCGCCGGCCTCAG	+
Preference number: 6 (lower is better) Translates to: APPSCGGRRPRS*CGQWAAKRRPQ Trigger: CTGAGGCCGGCGCTTAGCGGCCCACTGTCCGCAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGGGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000265992.9 ENST00000403870.7 ENST00000465148.3
CDS GCA 72 bp	CCGCCGTCGTGCGGCGGACGCCGGCCCCGCTCATGCTaGGGACAGTGGGCCGCTAAGCGCCGGCCTCAGCTA	+
Preference number: 6 (lower is better) Translates to: PPSCGGRRPRSC*GQWAAKRRPQL Trigger: TAGCTGAGGCCGGCGCTTAGCGGCCCACTGTCCGCAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000265992.9 ENST00000403870.7 ENST00000465148.3
CDS CCA 72 bp	TGCGGCGGACGCCGGCCCCGCTCATGCTGCGGACAGTaGGCCGCTAAGCGCCGGCCTCAGCTAGAGCCCAGC	+
Preference number: 6 (lower is better) Translates to: CGGRRPRSCCGQ*AAKRRPQLEPS Trigger: GCTGGGCTCTAGCTGAGGCCGGCGCTTAGCGGCCCACTGTCCGCAGCATGAGCGGGGCCGGCGTCCGCCGCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000265992.9 ENST00000403870.7 ENST00000465148.3
CDS TCA 72 bp	AGGCGGCTCCGCATACAAAGCCAGCGCGGGGGCACTTaGGGCCCCGCCGCTGCCAATCTCGTCTCGCGATAC	+
Preference number: 6 (lower is better) Translates to: RRLRIQSQRGGT*GPAAANLVSRY Trigger: GTATCGCGAGACGAGATTGGCAGCGGCGGGGCCTCAAGTGCCCCCGCGCTGGCTTTGTATGCGGAGCCGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000265992.9 ENST00000403870.7
CDS CAA 72 bp	CAGGCGGCTCCGCATACAAAGCCAGCGCGGGGGCACTaGAGGCCCCGCCGCTGCCAATCTCGTCTCGCGATA	+
Preference number: 6 (lower is better) Translates to: QAAPHTKPARGH*RPRRCQSRLAI Trigger: TATCGCGAGACGAGATTGGCAGCGGCGGGGCCTCAAGTGCCCCCGCGCTGGCTTTGTATGCGGAGCCGCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000265992.9 ENST00000403870.7

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