RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCNG2 (Homo sapiens)

Ensembl gene IDs: ENSG00000138764

Ensembl transcript IDs: ENST00000316355.10, ENST00000395640.5, ENST00000497512.5, ENST00000502280.5, ENST00000509972.1, ENST00000512918.5, ENST00000514756.1

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGGGCTTCTCAATTTTATTCATCACAGTCATGGGAAAGCCACCTaGTTGAATGGCACAGGAGGGTATAACCAGGCTCCTGGACTTGTC +
Preference number: 1 (lower is better)
Translates to: QGLLNFIHHSHGKAT*LNGTGGYNQAPGLV
Trigger: GACAAGTCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATTGAGAAGCCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR TCA 90 bp GGCTTCTCAATTTTATTCATCACAGTCATGGGAAAGCCACCTGGTTaGATGGCACAGGAGGGTATAACCAGGCTCCTGGACTTGTCTGTG +
Preference number: 1 (lower is better)
Translates to: GFSILFITVMGKPPG*MAQEGITRLLDLSV
Trigger: CACAGACAAGTCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATTGAGAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR TCA 90 bp TTCACCATGCGCAACAGCAAAGTGCGTGCACCACATCCTAGAAAATaGCAGGATCAAAACCTGAAAGGTCAAATCTCTCGCCAAGTCAAC +
Preference number: 1 (lower is better)
Translates to: FTMRNSKVRAPHPRK*QDQNLKGQISRQVN
Trigger: GTTGACTTGGCGAGAGATTTGACCTTTCAGGTTTTGATCCTGTCATTTTCTAGGATGTGGTGCACGCACTTTGCTGTTGCGCATGGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 90 bp ATGGCCTCTCATCTTTCAGTAATCCAGCTGAGCTTCTTTGCAGCATaGTGGCTAGCTTCCAAAAAGGATAAAAGGAAAGCTGCCAGTCTC +
Preference number: 1 (lower is better)
Translates to: MASHLSVIQLSFFAA*WLASKKDKRKAASL
Trigger: GAGACTGGCAGCTTTCCTTTTATCCTTTTTGGAAGCTAGCCACCATGCTGCAAAGAAGCTCAGCTGGATTACTGAAAGATGAGAGGCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 90 bp GCCTCTCATCTTTCAGTAATCCAGCTGAGCTTCTTTGCAGCATGGTaGCTAGCTTCCAAAAAGGATAAAAGGAAAGCTGCCAGTCTCTTA +
Preference number: 1 (lower is better)
Translates to: ASHLSVIQLSFFAAW*LASKKDKRKAASLL
Trigger: TAAGAGACTGGCAGCTTTCCTTTTATCCTTTTTGGAAGCTAGCCACCATGCTGCAAAGAAGCTCAGCTGGATTACTGAAAGATGAGAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 90 bp AGTCTCTTAAAGCCTAGGCTTGGACATATACTAAATTTCTTCTGCTaGACTTCAGTAAGCAAAGCCATTCATAAGGCCAGCCAAAACTCA +
Preference number: 1 (lower is better)
Translates to: SLLKPRLGHILNFFC*TSVSKAIHKASQNS
Trigger: TGAGTTTTGGCTGGCCTTATGAATGGCTTTGCTTACTGAAGTGCAGCAGAAGAAATTTAGTATATGTCCAAGCCTAGGCTTTAAGAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR CCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTCATGGGAAAGCCACCTaGTTGAATGGCACAGGAGGG +
Preference number: 2 (lower is better)
Translates to: SWELKAGTSKIISHPQESHGKAT*LNGTGG
Trigger: CCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATG...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CAA 90 bp GGGCTTCTCAATTTTATTCATCACAGTCATGGGAAAGCCACCTGGTaGAATGGCACAGGAGGGTATAACCAGGCTCCTGGACTTGTCTGT +
Preference number: 2 (lower is better)
Translates to: GLLNFIHHSHGKATW*NGTGGYNQAPGLVC
Trigger: ACAGACAAGTCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATTGAGAAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGGCATGGCAGGCCATGTaGATAAACAGGTTGCAAGCT +
Preference number: 2 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRAWQAM*INRLQA
Trigger: AGCTTGCAACCTGTTTATTCACATGGCCTGCCATGC...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCCCTAAGTTTCCAACATaGATAGATGGAATTATTCGC +
Preference number: 2 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSPKFPT*IDGIIR
Trigger: GCGAATAATTCCATCTATTCATGTTGGAAACTTAGG...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR CCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGTCAGAAACCTCCAAGTaGCATGGCAGGCCATGTGAA +
Preference number: 2 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRSETSK*HGRPCE
Trigger: TTCACATGGCCTGCCATGCCACTTGGAGGTTTCTGA...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGGCAGGAGGATCACTTaGGCCTGGGAGTATGTAAGA +
Preference number: 2 (lower is better)
Translates to: SLHHSTILGIHTNITKPRGRRIT*AWEYVR
Trigger: TCTTACATACTCCCAGGCTCAAGTGATCCTCCTGCC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
3UTR-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCCTTCATATTCAATCTTaGCACCCATATAGCAATACA +
Preference number: 2 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSLHIQS*HPYSNT
Trigger: TGTATTGCTATATGGGTGCCAAGATTGAATATGAAG...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CAA 90 bp GTCTCTGAGAGCATACTTAATGAGTCCATCCCACAAAGAGGTCAATaGTCAAATGACAGATTCTCTTTCAGTATCTCCAAGGCACAGATG +
Preference number: 2 (lower is better)
Translates to: VSESILNESIPQRGQ*SNDRFSFSISKAQM
Trigger: CATCTGTGCCTTGGAGATACTGAAAGAGAATCTGTCATTTGACAATTGACCTCTTTGTGGGATGGACTCATTAAGTATGCTCTCAGAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTTCTCTACAGTTAACCTaGGTATGTATTAATCCTGAG +
Preference number: 2 (lower is better)
Translates to: SWELKAGTSKIISHPQESSLQLT*VCINPE
Trigger: CTCAGGATTAATACATACTCAGGTTAACTGTAGAGA...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGCCTGTTGCCTCTCACTaGAAATTAATAGGCATTCTG +
Preference number: 2 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRPVASH*KLIGIL
Trigger: CAGAATGCCTATTAATTTTCAGTGAGAGGCAACAGG...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGAGAAGAGGTGTTACATaGAAACCATATTCAGTGTAC +
Preference number: 2 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRRRGVT*KPYSVY
Trigger: GTACACTGAATATGGTTTTCATGTAACACCTCTTCT...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR TCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTGGTGCTTGCTTTCTCTaGTGTCTTACACTATTCCAG +
Preference number: 2 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIGACFL*CLTLFQ
Trigger: CTGGAATAGTGTAAGACATCAGAGAAAGCAAGCACC...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
3UTR-3UTR TCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTGTTAATTTGCTTACCTaGAGAGTGGGGGCTTTAATT +
Preference number: 2 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIVNLLT*RVGALI
Trigger: AATTAAAGCCCCCACTCTTCAGGTAAGCAAATTAAC...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000509972.1
3UTR CCA 72 bp GGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTaGACGGGAAGAGCAGCATGTAGGCACAGGGATGGA +
Preference number: 3 (lower is better)
Translates to: GQPKLKRNRLHL*TGRAACRHRDG
Trigger: TCCATCCCTGTGCCTACATGCTGCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR TCA 72 bp ATTTTATTCATCACAGTCATGGGAAAGCCACCTGGTTaGATGGCACAGGAGGGTATAACCAGGCTCCTGGAC +
Preference number: 3 (lower is better)
Translates to: ILFITVMGKPPG*MAQEGITRLLD
Trigger: GTCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR CAA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTGGAAAGGACCACCACTaGCAAAACCACCTGATACTT +
Preference number: 3 (lower is better)
Translates to: SWELKAGTSKIISHPQESGKDHH*QNHLIL
Trigger: AAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCC...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR TCA 72 bp CGCAACAGCAAAGTGCGTGCACCACATCCTAGAAAATaGCAGGATCAAAACCTGAAAGGTCAAATCTCTCGC +
Preference number: 3 (lower is better)
Translates to: RNSKVRAPHPRK*QDQNLKGQISR
Trigger: GCGAGAGATTTGACCTTTCAGGTTTTGATCCTGTCATTTTCTAGGATGTGGTGCACGCACTTTGCTGTTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 72 bp CCTAGGCACAATACTTCACCATGCGCAACAGCAAAGTaGGTGCACCACATCCTAGAAAATGACAGGATCAAA +
Preference number: 3 (lower is better)
Translates to: PRHNTSPCATAK*VHHILENDRIK
Trigger: TTTGATCCTGTCATTTTCTAGGATGTGGTGCACGCACTTTGCTGTTGCGCATGGTGAAGTATTGTGCCTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 72 bp CTCAATTTTATTCATCACAGTCATGGGAAAGCCACCTaGTTGAATGGCACAGGAGGGTATAACCAGGCTCCT +
Preference number: 3 (lower is better)
Translates to: LNFIHHSHGKAT*LNGTGGYNQAP
Trigger: AGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 72 bp TTCTGTGGTGTAGCTGAGGATACACCCACATTCAGCTaGGAGCTTAAGGCTGGAACATCCAAGATAATCTCT +
Preference number: 3 (lower is better)
Translates to: FCGVAEDTPTFS*ELKAGTSKIIS
Trigger: AGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCTGAATGTGGGTGTATCCTCAGCTACACCACAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 72 bp ACTTCCACTGCCTTAGTTCAGTCAGACTGGTCTCCATaGTGCTACTCTATATTGCCCAGTTCATCTTCTGTA +
Preference number: 3 (lower is better)
Translates to: TSTALVQSDWSP*CYSILPSSSSV
Trigger: TACAGAAGATGAACTGGGCAATATAGAGTAGCAGCATGGAGACCAGTCTGACTGAACTAAGGCAGTGGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 72 bp CTTTCAGTAATCCAGCTGAGCTTCTTTGCAGCATGGTaGCTAGCTTCCAAAAAGGATAAAAGGAAAGCTGCC +
Preference number: 3 (lower is better)
Translates to: LSVIQLSFFAAW*LASKKDKRKAA
Trigger: GGCAGCTTTCCTTTTATCCTTTTTGGAAGCTAGCCACCATGCTGCAAAGAAGCTCAGCTGGATTACTGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 72 bp AAGCCTAGGCTTGGACATATACTAAATTTCTTCTGCTaGACTTCAGTAAGCAAAGCCATTCATAAGGCCAGC +
Preference number: 3 (lower is better)
Translates to: KPRLGHILNFFC*TSVSKAIHKAS
Trigger: GCTGGCCTTATGAATGGCTTTGCTTACTGAAGTGCAGCAGAAGAAATTTAGTATATGTCCAAGCCTAGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 72 bp CATCTTTCAGTAATCCAGCTGAGCTTCTTTGCAGCATaGTGGCTAGCTTCCAAAAAGGATAAAAGGAAAGCT +
Preference number: 3 (lower is better)
Translates to: HLSVIQLSFFAA*WLASKKDKRKA
Trigger: AGCTTTCCTTTTATCCTTTTTGGAAGCTAGCCACCATGCTGCAAAGAAGCTCAGCTGGATTACTGAAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR-3UTR CAA 90 bp CCTGAGCATTCTGTTCTACTTAATACCTGTTGCCTCTCACTGAAAATTAATAGGCTGCTAAGGAAGCACTaGCATACTTCCAATCTGCTT +
Preference number: 3 (lower is better)
Translates to: PEHSVLLNTCCLSLKINRLLRKH*HTSNLL
Trigger: AAGCAGATTGGAAGTATGCAAGTGCTTCCTTAGCAG...CCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 72 bp TTAAAGCCTAGGCTTGGACATATACTAAATTTCTTCTaGTGCACTTCAGTAAGCAAAGCCATTCATAAGGCC +
Preference number: 3 (lower is better)
Translates to: LKPRLGHILNFF*CTSVSKAIHKA
Trigger: GGCCTTATGAATGGCTTTGCTTACTGAAGTGCAGCAGAAGAAATTTAGTATATGTCCAAGCCTAGGCTTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR GCA 72 bp TGCCAACCTGAGCATTCTGTTCTACTTAATACCTGTTaGCTCTCACTGAAAATTAATAGGCATTCTGGTAAT +
Preference number: 3 (lower is better)
Translates to: CQPEHSVLLNTC*LSLKINRHSGN
Trigger: ATTACCAGAATGCCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGGTTGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CCA 72 bp AATAATTTGTTATTTCTAGTGAGTCTGTGGGTTGATTaGGATCGACTGAGTAGTTCCTCTGTTTTCTGTGGT +
Preference number: 3 (lower is better)
Translates to: NNLLFLVSLWVD*DRLSSSSVFCG
Trigger: ACCACAGAAAACAGAGGAACTACTCAGTCGATCCCAATCAACCCACAGACTCACTAGAAATAACAAATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTCCACCGCCTCAGCGGTaGCCCCGGTCCGGCATCCGA +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESPPPQR*PRSGIR
Trigger: TCGGATGCCGGACCGGGGGCACCGCTGAGGCGGTGG...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTGCGGTCCGCACGGACTaGGCGCAGCGGGGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESAVRTD*AQRGLP
Trigger: TGGAAGCCCCCGCTGCGCCCAGTCCGTGCGGACCGC...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCGCGGTCCGCACGGACTaGGCGCAGCGGGGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCAVRTD*AQRGLP
Trigger: TGGAAGCCCCCGCTGCGCCCAGTCCGTGCGGACCGC...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000316355.10
ENST00000502280.5
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCAGGGGGAGGAGCCGTaGTCAGGTCCGCCGGCCAGC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCQGEEP*SGPPAS
Trigger: GCTGGCCGGCGGACCTGACCACGGCTCCTCCCCCTG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000395640.5
CDS-3UTR GCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACCACCGCCTCAGCGGTaGCCCCGGTCCGGCATCCGA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEPPPQR*PRSGIR
Trigger: TCGGATGCCGGACCGGGGGCACCGCTGAGGCGGTGG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000316355.10
ENST00000502280.5
3UTR CAA 72 bp GGAAAGGACCACCACTTGCAAAACCACCTGATACTTTaGAGGTCCACAAGAGCCAGAAGCTGGCGGGGCCCT +
Preference number: 4 (lower is better)
Translates to: GKDHHLQNHLIL*RSTRARSWRGP
Trigger: AGGGCCCCGCCAGCTTCTGGCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCGGGAACCTATTGGGGTaGGGCAGGGGAAAGGACCAC +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSGNLLG*GRGKDH
Trigger: GTGGTCCTTTCCCCTGCCCCACCCCAATAGGTTCCC...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCCGACAAGGAGCGGGTaGAGGGACCAGTCACGTCCG +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFPTRSG*RDQSRP
Trigger: CGGACGTGACTGGTCCCTTCACCCGCTCCTTGTCGG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000395640.5
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCAGCGGGAGAAAGGGCTaGGGCCAGTACCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCSGRKG*GQYLQQ
Trigger: TTGCTGGAGGTACTGGCCTCAGCCCTTTCTCCCGCT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000395640.5
CDS-3UTR GCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCTTTCTCCTCACCCTCTaGTCTGAAAAGGGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSFLLTL*SEKGRG
Trigger: GCCCCTGCCCTTTTCAGAGCAGAGGGTGAGGAGAAA...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCCTGTTGTGGAGGTTCTaGGCTGTGCGCCTTGAAACG +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSLLWRF*AVRLET
Trigger: CGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAG...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCCTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTT +
Preference number: 4 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSLGCAP*NDPNQL
Trigger: AAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAG...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTTGGGAGGAGAGCTGCTaGGACTCTCCTCTCCACAAC +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESWEESC*DSPLHN
Trigger: GTTGTGGAGAGGAGAGTCTCAGCAGCTCTCCTCCCA...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTGGGAGGAGAGCTGCTaGGACTCTCCTCTCCACAAC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCWEESC*DSPLHN
Trigger: GTTGTGGAGAGGAGAGTCTCAGCAGCTCTCCTCCCA...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp GGAGGGTATAACCAGGCTCCTGGACTTGTCTGTGAGCCTCCTAATAATGCCCAAGCATGGCAGGCCATGTaGATAAACAGGTTGCAAGCT +
Preference number: 4 (lower is better)
Translates to: GGYNQAPGLVCEPPNNAQAWQAM*INRLQA
Trigger: AGCTTGCAACCTGTTTATTCACATGGCCTGCCATGC...TTGGGCATTATTAGGAGGCTCACAGACAAGTCCAGGAGCCTGGTTATACCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCCAAATCCTTCATCGTaGCGGAGACGCGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETPNPSS*RRRAST
Trigger: GGTGGAGGCGCGTCTCCGGCACGATGAAGGATTTGG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000316355.10
ENST00000502280.5
CDS-3UTR GCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCCAAATCCTTCATCGTaGCGGAGACGCGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFPNPSS*RRRAST
Trigger: GGTGGAGGCGCGTCTCCGGCACGATGAAGGATTTGG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000316355.10
ENST00000502280.5
CDS-3UTR TCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCAGTTGGACCCCTTCATaGCCTGCCAAGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETSWTPS*PAKCSA
Trigger: GGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACT...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTAGTTGGACCCCTTCATaGCCTGCCAAGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFSWTPS*PAKCSA
Trigger: GGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACT...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR GCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGACCCCTTCATGACCTaGCAAGTGCTCTGCCCCCAA +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFDPFMT*QVLCPQ
Trigger: TTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTC...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCTGTTGTGGAGGTTCTaGGCTGTGCGCCTTGAAACG +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCLLWRF*AVRLET
Trigger: CGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCCCCCTCAGGTATCGTTaGCAGCTCAGGAACACTATA +
Preference number: 4 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSPLRYR*QLRNTI
Trigger: TATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGG...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACAAGAGCCAGAAGCTaGCGGGGCCCTATCACAGCG +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFETRARS*RGPITA
Trigger: CGCTGTGATAGGGCCCCGCCAGCTTCTGGCTCTTGT...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAAGTTGGACCCCTTCATaGCCTGCCAAGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFESWTPS*PAKCSA
Trigger: GGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACT...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTT +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCLGCAP*NDPNQL
Trigger: AAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAATGGGAGGAGAGCTGCTaGGACTCTCCTCTCCACAAC +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEWEESC*DSPLHN
Trigger: GTTGTGGAGAGGAGAGTCTCAGCAGCTCTCCTCCCA...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR GCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGACCCCTTCATGACCTaGCAAGTGCTCTGCCCCCAA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEDPFMT*QVLCPQ
Trigger: TTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR GCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTGGAGGTTCTGGGCTGTaGGCCTTGAAACGATCCAAA +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESGGSGL*ALKRSK
Trigger: TTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCC...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCCACAATACTTCACCATaGGCAACAGCAAAGTGCGTG +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSHNTSP*ATAKCV
Trigger: CACGCACTTTGCTGTTGCGCATGGTGAAGTATTGTG...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCACCTGCCAAGTGCTCTaGCCCCAAATCCTTCATCTG +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCTCQVL*PQILHL
Trigger: CAGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000395640.5
CDS-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCTTAGAAGGCTCACTCTaGAATCACTGTAGCCTCACC +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSLEGSL*NHCSLT
Trigger: GGTGAGGCTACAGTGATTCCAGAGTGAGCCTTCTAA...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCTCTAACCACACTTCCTaGGAGGAGGAAACAGTAGCA +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSSNHTS*EEETVA
Trigger: TGCTACTGTTTCCTCCTCCCAGGAAGTGTGGTTAGA...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp GGAGGGTATAACCAGGCTCCTGGACTTGTCTGTGAGCCTCCTAATAATGCCCAAGCAGTACATTTACACTaGCTAATCCGGATCACATCA +
Preference number: 4 (lower is better)
Translates to: GGYNQAPGLVCEPPNNAQAVHLH*LIRITS
Trigger: TGATGTGATCCGGATTAGTCAGTGTAAATGTACTGC...TTGGGCATTATTAGGAGGCTCACAGACAAGTCCAGGAGCCTGGTTATACCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTT +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETLGCAP*NDPNQL
Trigger: AAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCAGGGATGGAAAGACTaGCTGGCCATCATACTGGGA +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETQGWKD*LAIILG
Trigger: TCCCAGTATGATGGCCAGTCAGTCTTTCCATCCCTG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTAGCGGGAGAAAGGGCTaGGGCCAGTACCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: PTPQSLHHSTILGIHTNISGRKG*GQYLQQ
Trigger: TTGCTGGAGGTACTGGCCTCAGCCCTTTCTCCCGCT...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR GCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGACCTGCCAAGTGCTCTaGCCCCAAATCCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRTCQVL*PQILHR
Trigger: ACGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGT...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCGGAGGTTCTGGGCTGTaGGCCTTGAAACGATCCAAA +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETGGSGL*ALKRSK
Trigger: TTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCC...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCCCCTCAGGTATCGTTaGCAGCTCAGGAACACTATA +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCPLRYR*QLRNTI
Trigger: TATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCGATGGAAAGACTGACTaGCCATCATACTGGGAAACT +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSDGKTD*PSYWET
Trigger: AGTTTCCCAGTATGATGGCCAGTCAGTCTTTCCATC...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCTCACGAGGAGTGTTCTaGAGCCAATGCCTCTCTACA +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETSRGVF*SQCLST
Trigger: TGTAGAGAGGCATTGGCTTCAGAACACTCCTCGTGA...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGGAGGTTCTGGGCTGTaGGCCTTGAAACGATCCAAA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEGGSGL*ALKRSK
Trigger: TTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR GCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTCATCCACACTTCCACTaGCTTAGTTCAGTCAGACTG +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESHPHFH*LSSVRL
Trigger: CAGTCTGACTGAACTAAGGCAGTGGAAGTGTGGATG...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTATCAAACTAGACAGATaGGGAACCTATTGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESIKLDR*GTYWGG
Trigger: CCCACCCCAATAGGTTCCCCATCTGTCTAGTTTGAT...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCTTCTTTGCAGCATGGTaGCTAGCTTCCAAAAAGGAT +
Preference number: 4 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSFFAAW*LASKKD
Trigger: ATCCTTTTTGGAAGCTAGCCACCATGCTGCAAAGAA...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
3UTR CAA 72 bp AATTTTATTCATCACAGTCATGGGAAAGCCACCTGGTaGAATGGCACAGGAGGGTATAACCAGGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: NFIHHSHGKATW*NGTGGYNQAPG
Trigger: TCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAAGTTGGACCCCTTCATaGCCTGCCAAGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRSWTPS*PAKCSA
Trigger: GGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACT...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR TCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCAATAGATTTTTCTCCTaGTTGTGCGTGACCTACTCA +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSNRFFS*LCVTYS
Trigger: TGAGTAGGTCACGCACAATCAGGAGAAAAATCTATT...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGGGAAAGCCACCTGGTTaGATGGCACAGGAGGGTATA +
Preference number: 4 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRGKPPG*MAQEGI
Trigger: TATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCC...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGACAGGATCAAAACCTaGAAGGTCAAATCTCTCGCC +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFDRIKT*KVKSLA
Trigger: GGCGAGAGATTTGACCTTTCAGGTTTTGATCCTGTC...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGACCCCTTCATGACCTaGCAAGTGCTCTGCCCCCAA +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRDPFMT*QVLCPQ
Trigger: TTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR GCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCGCTGCTACTCTATATTaGCCAGTTCATCTTCTGTAT +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSAATLY*PVHLLY
Trigger: ATACAGAAGATGAACTGGGCAATATAGAGTAGCAGC...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGCCAGCTGAGCTTCTTTaGAGCATGGTGGCTAGCTTC +
Preference number: 4 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRPAELL*SMVASF
Trigger: GAAGCTAGCCACCATGCTGCAAAGAAGCTCAGCTGG...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCTGTTGTGGAGGTTCTaGGCTGTGCGCCTTGAAACG +
Preference number: 4 (lower is better)
Translates to: PTPQSLHHSTILGIHTNILLWRF*AVRLET
Trigger: CGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACCCCTCAGGTATCGTTaGCAGCTCAGGAACACTATA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEPLRYR*QLRNTI
Trigger: TATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTGCAAGCTTTCAGCTaGGCTTCTAGTTTATCAAGG +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCLQAFS*ASSLSR
Trigger: CCTTGATAAACTAGAAGCTCAGCTGAAAGCTTGCAA...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCACAGGCAAAAGGAGATaGGCATATCACCTAAGTTTC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCTGKRR*AYHLSF
Trigger: GAAACTTAGGTGATATGCTCATCTCCTTTTGCCTGT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCTCTCTACAGTTAACCTaGGTATGTATTAATCCTGAG +
Preference number: 4 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSSLQLT*VCINPE
Trigger: CTCAGGATTAATACATACTCAGGTTAACTGTAGAGA...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACCTGCCAAGTGCTCTaGCCCCAAATCCTTCATCTG +
Preference number: 4 (lower is better)
Translates to: PTPQSLHHSTILGIHTNITCQVL*PQILHL
Trigger: CAGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGT...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGACACCCACATTCAGCTaGGAGCTTAAGGCTGGAACA +
Preference number: 4 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRTPTFS*ELKAGT
Trigger: TGTTCCAGCCTTAAGCTCCCAGCTGAATGTGGGTGT...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAATCCGGATCACATCATaGGTGGATGGAATATTGCAG +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEIRITS*VDGILQ
Trigger: CTGCAATATTCCATCCACTCATGATGTGATCCGGAT...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGCAGTACATTTACACTaGCTAATCCGGATCACATCA +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFAVHLH*LIRITS
Trigger: TGATGTGATCCGGATTAGTCAGTGTAAATGTACTGC...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGACTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTT +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRLGCAP*NDPNQL
Trigger: AAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAG...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR TCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGACTTGCTTTGTCTCCTaGAAGATCGTTCTAATCTGC +
Preference number: 4 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRTCFVS*KIVLIC
Trigger: GCAGATTAGAACGATCTTTCAGGAGACAAAGCAAGT...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGGAGGTTCTGGGCTGTaGGCCTTGAAACGATCCAAA +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRGGSGL*ALKRSK
Trigger: TTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCACATCATGAGTGGATaGAATATTGCAGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCHIMSG*NIAVFF
Trigger: GAAGAAGACTGCAATATTCCATCCACTCATGATGTG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCGGATCACATCATGAGTaGATGGAATATTGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCGSHHE*MEYCSL
Trigger: AAGACTGCAATATTCCATCCACTCATGATGTGATCC...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCCTTCATATTCAATCTTaGCACCCATATAGCAATACA +
Preference number: 4 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSLHIQS*HPYSNT
Trigger: TGTATTGCTATATGGGTGCCAAGATTGAATATGAAG...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGCAGTACATTTACACTaGCTAATCCGGATCACATCA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEAVHLH*LIRITS
Trigger: TGATGTGATCCGGATTAGTCAGTGTAAATGTACTGC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTTTTCCACTTCCAAATTaGGAAGGCACAAGGCTAATA +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFFPLPN*EGTRLI
Trigger: TATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAA...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR TCA 90 bp AGCTGGGAGCTTAAGGCTGGAACATCCAAGATAATCTCTCATCCTCAAGAGTCTAGAAGAGGTGTTACATaGAAACCATATTCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: SWELKAGTSKIISHPQESRRGVT*KPYSVY
Trigger: GTACACTGAATATGGTTTTCATGTAACACCTCTTCT...AGACTCTTGAGGATGAGAGATTATCTTGGATGTTCCAGCCTTAAGCTCCCAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCCTAAGTTTCCAACATaGATAGATGGAATTATTCGC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCPKFPT*IDGIIR
Trigger: GCGAATAATTCCATCTATTCATGTTGGAAACTTAGG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGCCACATCCTAGAAAATaGCAGGATCAAAACCTGAAA +
Preference number: 4 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRPHPRK*QDQNLK
Trigger: TTTCAGGTTTTGATCCTGTCATTTTCTAGGATGTGG...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGTTGTCTCAATAAGCTaGCAATTTGCATGTGTGATG +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFVVSIS*QFACVM
Trigger: CATCACACATGCAAATTGTCAGCTTATTGAGACAAC...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp CCTGAGCATTCTGTTCTACTTAATACCTGTTGCCTCTCACTGAAAATTAATAGGTCAGACTGGTCTCCATaGTGCTACTCTATATTGCCC +
Preference number: 4 (lower is better)
Translates to: PEHSVLLNTCCLSLKINRSDWSP*CYSILP
Trigger: GGGCAATATAGAGTAGCAGCATGGAGACCAGTCTGA...CCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCACATCATGAGTGGATaGAATATTGCAGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFHIMSG*NIAVFF
Trigger: GAAGAAGACTGCAATATTCCATCCACTCATGATGTG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGGGATCACATCATGAGTaGATGGAATATTGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRGSHHE*MEYCSL
Trigger: AAGACTGCAATATTCCATCCACTCATGATGTGATCC...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCGGATCACATCATGAGTaGATGGAATATTGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETGSHHE*MEYCSL
Trigger: AAGACTGCAATATTCCATCCACTCATGATGTGATCC...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGACCCCTCAGGTATCGTTaGCAGCTCAGGAACACTATA +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRPLRYR*QLRNTI
Trigger: TATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGG...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCATCAGATTTCTAAGATaGAAAGCACAGTGTTTGTGC +
Preference number: 4 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCIRFLR*KAQCLC
Trigger: GCACAAACACTGTGCTTTCCATCTTAGAAATCTGAT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAATATTCATCACAGTCATaGGAAAGCCACCTGGTTGAA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEYSSQS*ESHLVE
Trigger: TTCAACCAGGTGGCTTTCCCATGACTGTGATGAATA...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAATTTCCACTTCCAAATTaGGAAGGCACAAGGCTAATA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEFPLPN*EGTRLI
Trigger: TATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAA...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCAACTTCTTAAGATCTaGTTTGCAACATTCAGGAGA +
Preference number: 4 (lower is better)
Translates to: RWGLNQETTYSPIYCFETQLLKI*FATFRR
Trigger: TCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCAACTTCTTAAGATCTaGTTTGCAACATTCAGGAGA +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFQLLKI*FATFRR
Trigger: TCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTATCAGATTTCTAAGATaGAAAGCACAGTGTTTGTGC +
Preference number: 4 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFIRFLR*KAQCLC
Trigger: GCACAAACACTGTGCTTTCCATCTTAGAAATCTGAT...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CCA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTTCAGAAACCTCCAAGTaGCATGGCAGGCCATGTGAA +
Preference number: 4 (lower is better)
Translates to: LCTKSYMYRVYISPILMASETSK*HGRPCE
Trigger: TTCACATGGCCTGCCATGCCACTTGGAGGTTTCTGA...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp CCTGAGCATTCTGTTCTACTTAATACCTGTTGCCTCTCACTGAAAATTAATAGGTTTCTAGTGAGTCTGTaGGTTGATTGGGATCGACTG +
Preference number: 4 (lower is better)
Translates to: PEHSVLLNTCCLSLKINRFLVSL*VDWDRL
Trigger: CAGTCGATCCCAATCAACCCACAGACTCACTAGAAA...CCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGATGGAATTATTCGCTaGGAAAGACATAAAGAACCA +
Preference number: 4 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEDGIIR*ERHKEP
Trigger: TGGTTCTTTATGTCTTTCTCAGCGAATAATTCCATC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR GCA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTGACTGGTCTCCATGCTaGTACTCTATATTGCCCAGT +
Preference number: 4 (lower is better)
Translates to: LCTKSYMYRVYISPILMADWSPC*YSILPS
Trigger: ACTGGGCAATATAGAGTAGCAGCATGGAGACCAGTC...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGCAGTACATTTACACTaGCTAATCCGGATCACATCA +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRAVHLH*LIRITS
Trigger: TGATGTGATCCGGATTAGTCAGTGTAAATGTACTGC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGATTGCAAGCTTTCAGCTaGGCTTCTAGTTTATCAAGG +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRLQAFS*ASSLSR
Trigger: CCTTGATAAACTAGAAGCTCAGCTGAAAGCTTGCAA...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR GCA 90 bp CCTGAGCATTCTGTTCTACTTAATACCTGTTGCCTCTCACTGAAAATTAATAGGCTAAATTTCTTCTGCTaGACTTCAGTAAGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: PEHSVLLNTCCLSLKINRLNFFC*TSVSKA
Trigger: GGCTTTGCTTACTGAAGTGCAGCAGAAGAAATTTAG...CCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCACATCATGAGTGGATaGAATATTGCAGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIHIMSG*NIAVFF
Trigger: GAAGAAGACTGCAATATTCCATCCACTCATGATGTG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGCAACTTCTTAAGATCTaGTTTGCAACATTCAGGAGA +
Preference number: 4 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRQLLKI*FATFRR
Trigger: TCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTG...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGATTTCCACTTCCAAATTaGGAAGGCACAAGGCTAATA +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRFPLPN*EGTRLI
Trigger: TATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAA...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR TCA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTCCTGTTGCCTCTCACTaGAAATTAATAGGCATTCTG +
Preference number: 4 (lower is better)
Translates to: LCTKSYMYRVYISPILMAPVASH*KLIGIL
Trigger: CAGAATGCCTATTAATTTTCAGTGAGAGGCAACAGG...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGTTAATTTGCTTACCTaGAGAGTGGGGGCTTTAATT +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRVNLLT*RVGALI
Trigger: AATTAAAGCCCCCACTCTTCAGGTAAGCAAATTAAC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR GCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAATTAGTCAAGGAACCTaGCTACCTTTCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRISQGT*LPFTFI
Trigger: GATGAAAGTGAAAGGTAGGCAGGTTCCTTGACTAAT...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGAGGATCACATCATGAGTaGATGGAATATTGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: SLHHSTILGIHTNITKPRGSHHE*MEYCSL
Trigger: AAGACTGCAATATTCCATCCACTCATGATGTGATCC...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCAACTTCTTAAGATCTaGTTTGCAACATTCAGGAGA +
Preference number: 4 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIQLLKI*FATFRR
Trigger: TCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CCA 90 bp CTCGGGTTCTTCATATTCAATCTTGGCACCCATATAGCAATACACTATTCTGAAATCAGATTTCTAAGATaGAAAGCACAGTGTTTGTGC +
Preference number: 4 (lower is better)
Translates to: LGFFIFNLGTHIAIHYSEIRFLR*KAQCLC
Trigger: GCACAAACACTGTGCTTTCCATCTTAGAAATCTGAT...TTCAGAATAGTGTATTGCTATATGGGTGCCAAGATTGAATATGAAGAACCCGAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR TCA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTTTTCCACTTCCAAATTaGGAAGGCACAAGGCTAATA +
Preference number: 4 (lower is better)
Translates to: LCTKSYMYRVYISPILMAFPLPN*EGTRLI
Trigger: TATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAA...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS CCA 90 bp GGAGACGCGCCTCCACCCGCCCGCGGCCTCGCGGTCCGCACGGACTaGGCGCAGCGGGGGCTTCCAAACCTGTCTCGCAGGTCGGGGACC +
Preference number: 5 (lower is better)
Translates to: GDAPPPARGLAVRTD*AQRGLPNLSRRSGT
Trigger: GGTCCCCGACCTGCGAGACAGGTTTGGAAGCCCCCGCTGCGCCCAGTCCGTGCGGACCGCGAGGCCGCGGGCGGGTGGAGGCGCGTCTCC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000497512.5
ENST00000502280.5
CDS GCA 90 bp CAGGTAGACGTTCAACAACCCGAGAAGTTGGACCCCTTCATGACCTaGCAAGTGCTCTGCCCCCAAATCCTTCATCGTGCCGGAGACGCG +
Preference number: 5 (lower is better)
Translates to: QVDVQQPEKLDPFMT*QVLCPQILHRAGDA
Trigger: CGCGTCTCCGGCACGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000497512.5
ENST00000502280.5
CDS TCA 90 bp AAGAGGTCCCCTATGATGATCTCAGCAGCAGCTTGTCTCTGCACTTaGTCCTCTCTGCAGGTCTGCTTCAGGTCCAGGAGCTGTAATCCC +
Preference number: 5 (lower is better)
Translates to: KRSPMMISAAACLCT*SSLQVCFRSRSCNP
Trigger: GGGATTACAGCTCCTGGACCTGAAGCAGACCTGCAGAGAGGATCAAGTGCAGAGACAAGCTGCTGCTGAGATCATCATAGGGGACCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS-3UTR CAA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCGGGAAAGCCACCTGGTaGAATGGCACAGGAGGGTAT +
Preference number: 5 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSGKATW*NGTGGY
Trigger: ATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCC...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCTCTGGGCTGTGCGCCTaGAAACGATCCAAACCAACT +
Preference number: 5 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSSGLCA*KRSKPT
Trigger: AGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGA...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCCCCCCTCAGGTATCGTaGGCAGCTCAGGAACACTAT +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCPPQVS*AAQEHY
Trigger: ATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGGG...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCAACAACCCGAGAAGTaGGACCCCTTCATGACCTGC +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFQQPEK*DPFMTC
Trigger: GCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTCTGGGCTGTGCGCCTaGAAACGATCCAAACCAACT +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCSGLCA*KRSKPT
Trigger: AGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGA...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCCCCCTCAGGTATCGTaGGCAGCTCAGGAACACTAT +
Preference number: 5 (lower is better)
Translates to: RWGLNQETTYSPIYCFETPPQVS*AAQEHY
Trigger: ATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGGG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACAACAACCCGAGAAGTaGGACCCCTTCATGACCTGC +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEQQPEK*DPFMTC
Trigger: GCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp GGAGGGTATAACCAGGCTCCTGGACTTGTCTGTGAGCCTCCTAATAATGCCCAATTGGAATCTCTCTTCTaGTTCCAGGTAGACGTTCAA +
Preference number: 5 (lower is better)
Translates to: GGYNQAPGLVCEPPNNAQLESLF*FQVDVQ
Trigger: TTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAA...TTGGGCATTATTAGGAGGCTCACAGACAAGTCCAGGAGCCTGGTTATACCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTTCTGGGCTGTGCGCCTaGAAACGATCCAAACCAACT +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFSGLCA*KRSKPT
Trigger: AGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGA...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACCCCCTCAGGTATCGTaGGCAGCTCAGGAACACTAT +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEPPQVS*AAQEHY
Trigger: ATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGGG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCAAAGAAGGTGCACTCTaGATCACTGGGAGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCKEGAL*ITGRRA
Trigger: AGCTCTCCTCCCAGTGATCAAGAGTGCACCTTCTTT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCAAAGAACCAGCAGGTTaGGGAGTAATCAGAAACCTC +
Preference number: 5 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSKEPAG*GVIRNL
Trigger: GAGGTTTCTGATTACTCCCAAACCTGCTGGTTCTTT...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGAAAGAAGGTGCACTCTaGATCACTGGGAGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRKEGAL*ITGRRA
Trigger: AGCTCTCCTCCCAGTGATCAAGAGTGCACCTTCTTT...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCAAAGAAGGTGCACTCTaGATCACTGGGAGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: RWGLNQETTYSPIYCFETKEGAL*ITGRRA
Trigger: AGCTCTCCTCCCAGTGATCAAGAGTGCACCTTCTTT...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS TCA 90 bp AGGAACACTATAGTAGCTGTTGTGGAGGTTCTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTTCTTAAGATCTGGTTTGCAACATTC +
Preference number: 5 (lower is better)
Translates to: RNTIVAVVEVLGCAP*NDPNQLLKIWFATF
Trigger: GAATGTTGCAAACCAGATCTTAAGAAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAGCTACTATAGTGTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
CDS TCA 90 bp GTCTTAGTTCCAAACTCCTCAGGCCCTTTCCCCTTCCAGGCAAAATaGACAATCAGGTTTACTGTTCAAAGTTCTGGCTGCAGAAAGGAT +
Preference number: 5 (lower is better)
Translates to: VLVPNSSGPFPFQAK*TIRFTVQSSGCRKD
Trigger: ATCCTTTCTGCAGCCAGAACTTTGAACAGTAAACCTGATTGTTCATTTTGCCTGGAAGGGGAAAGGGCCTGAGGAGTTTGGAACTAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000514756.1
CDS-3UTR CAA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCAACAACCCGAGAAGTaGGACCCCTTCATGACCTGC +
Preference number: 5 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIQQPEK*DPFMTC
Trigger: GCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCCCCCTCAGGTATCGTaGGCAGCTCAGGAACACTAT +
Preference number: 5 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIPPQVS*AAQEHY
Trigger: ATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGGG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp ATAAGGCCAGCCAAAACTCAAGAGAAACAGACTCCACTTGTGGACGGGAAGAGCAGTGTTTGTGCCACTTaGAAGTTGAAAAAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: IRPAKTQEKQTPLVDGKSSVCAT*KLKKKV
Trigger: CACCTTCTTTTTCAACTTCAAAGTGGCACAAACACT...GCTCTTCCCGTCCACAAGTGGAGTCTGTTTCTCTTGAGTTTTGGCTGGCCTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTGGAATCTCTCTTCTaGTTCCAGGTAGACGTTCAA +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCLESLF*FQVDVQ
Trigger: TTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAA...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCCCCTTTTTCTCGAGGTaGGAATCTCTCTTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: RWGLNQETTYSPIYCFETPFFSR*ESLFLF
Trigger: GAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGG...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp GGGAAAGGACCACCACTTGCAAAACCACCTGATACTTTTGAGGTCCACAAGAGCCTTAAATCTTCAACTTaGGCATTTCTCAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: GKGPPLAKPPDTFEVHKSLKSST*AFLNPG
Trigger: TCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAG...GCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTTCTGGGCTGTGCGCCTaGAAACGATCCAAACCAACT +
Preference number: 5 (lower is better)
Translates to: PTPQSLHHSTILGIHTNISGLCA*KRSKPT
Trigger: AGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGA...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGCTGCTAAGGAAGCACTaGCATACTTCCAATCTGCTT +
Preference number: 5 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRLLRKH*HTSNLL
Trigger: AAGCAGATTGGAAGTATGCAAGTGCTTCCTTAGCAG...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACCCTTTTTCTCGAGGTaGGAATCTCTCTTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEPFFSR*ESLFLF
Trigger: GAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCGTTTCCACTTCCAAATaGAGAAGGCACAAGGCTAAT +
Preference number: 5 (lower is better)
Translates to: RWGLNQETTYSPIYCFETVSTSK*RRHKAN
Trigger: ATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAAC...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCAGTGTTTGTGCCACTTaGAAGTTGAAAAAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCSVCAT*KLKKKV
Trigger: CACCTTCTTTTTCAACTTCAAAGTGGCACAAACACT...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp AGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAACCTGGAAAGCACAGTGTTaGTGCCACTTTGAAGTTGAA +
Preference number: 5 (lower is better)
Translates to: RWGLNQETTYSPIYCFETWKAQC*CHFEVE
Trigger: TTCAACTTCAAAGTGGCACAAACACTGTGCTTTCCA...GGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTTGGAAAGCACAGTGTTaGTGCCACTTTGAAGTTGAA +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFWKAQC*CHFEVE
Trigger: TTCAACTTCAAAGTGGCACAAACACTGTGCTTTCCA...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGGGAAAGGACCACCACTaGCAAAACCACCTGATACTT +
Preference number: 5 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRGKDHH*QNHLIL
Trigger: AAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCC...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGAGCTAAAGAGAGTCTaGAGATTTGGTAAGCCCCAA +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEELKRV*RFGKPQ
Trigger: TTGGGGCTTACCAAATCTCAAGACTCTCTTTAGCTC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAAGTTTCCACTTCCAAATaGAGAAGGCACAAGGCTAAT +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFEVSTSK*RRHKAN
Trigger: ATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAAC...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp TTCCTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTCTTAAGATCTGGTTaGCAACATTCAGGAGAAGAA +
Preference number: 5 (lower is better)
Translates to: FLTRWGLNQETTYSPIYCFLRSG*QHSGEE
Trigger: TTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAA...GCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTAGTGTTTGTGCCACTTaGAAGTTGAAAAAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFSVCAT*KLKKKV
Trigger: CACCTTCTTTTTCAACTTCAAAGTGGCACAAACACT...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTCTTAAATCTTCAACTTaGGCATTTCTCAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFLKSST*AFLNPG
Trigger: TCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAG...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTTTCTTAAGATCTGGTTaGCAACATTCAGGAGAAGAA +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFFLRSG*QHSGEE
Trigger: TTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAA...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CTGACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTTTGAAAAGTAACAAATaGAAGGTATCAGCACCTTCC +
Preference number: 5 (lower is better)
Translates to: LTRWGLNQETTYSPIYCFLKSNK*KVSAPS
Trigger: GGAAGGTGCTGATACCTTCAATTTGTTACTTTTCAA...AAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp GTACCTCTGCTGATAAAGAGTACAGGTCTAAACCATGCCAATGGCAGAAAAAGGAGCAGGAACACCATATaGAAACCTAGTGTTGAAATA +
Preference number: 5 (lower is better)
Translates to: VPLLIKSTGLNHANGRKRSRNTI*KPSVEI
Trigger: TATTTCAACACTAGGTTTCAATATGGTGTTCCTGCT...CCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGACCCTTTTTCTCGAGGTaGGAATCTCTCTTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: SLHHSTILGIHTNITKPRPFFSR*ESLFLF
Trigger: GAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGG...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp ACTAGATGGGGGCTAAACCAGGAAACTACCTATTCCCCCATTTATTGCTTTGAACTTAAATCTTCAACTTaGGCATTTCTCAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: TRWGLNQETTYSPIYCFELKSST*AFLNPG
Trigger: TCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAG...TTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS-3UTR CAA 90 bp CCTGAGCATTCTGTTCTACTTAATACCTGTTGCCTCTCACTGAAAATTAATAGGGTTTCCACTTCCAAATaGAGAAGGCACAAGGCTAAT +
Preference number: 5 (lower is better)
Translates to: PEHSVLLNTCCLSLKINRVSTSK*RRHKAN
Trigger: ATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAAC...CCTATTAATTTTCAGTGAGAGGCAACAGGTATTAAGTAGAACAGAATGCTCAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTGTTTCCACTTCCAAATaGAGAAGGCACAAGGCTAAT +
Preference number: 5 (lower is better)
Translates to: PTPQSLHHSTILGIHTNIVSTSK*RRHKAN
Trigger: ATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAAC...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTAACCACCTGATACTTTaGAGGTCCACAAGAGCCAGA +
Preference number: 5 (lower is better)
Translates to: LCTKSYMYRVYISPILMANHLIL*RSTRAR
Trigger: TCTGGCTCTTGTGGACCTCAAAAGTATCAGGTGGTT...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS CCA 90 bp AGAAGACACTATAGAGACGTGATGAGTAAGTTCAATGTCATACCCTaGATGGGATTCTTTTTGAATGAAGAGCTGCAAATCAAGCTGTTT +
Preference number: 5 (lower is better)
Translates to: RRHYRDVMSKFNVIP*MGFFLNEELQIKLF
Trigger: AAACAGCTTGATTTGCAGCTCTTCATTCAAAAAGAATCCCATCCAGGGTATGACATTGAACTTACTCATCACGTCTCTATAGTGTCTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS-3UTR CAA 90 bp CTCTGTACAAAATCTTACATGTACAGAGTTTATATAAGCCCCATTCTTATGGCTCCCTTTTTCTCGAGGTaGGAATCTCTCTTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: LCTKSYMYRVYISPILMAPFFSR*ESLFLF
Trigger: GAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGG...AGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp GAAGCTGAGGGATCACAAATATATTACAGTACCTCTGCTGATAAAGAGTACAGGTTCTTAAGATCTGGTTaGCAACATTCAGGAGAAGAA +
Preference number: 5 (lower is better)
Translates to: EAEGSQIYYSTSADKEYRFLRSG*QHSGEE
Trigger: TTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAA...CCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000316355.10
CDS-3UTR CAA 90 bp CCTACCCCTCAATCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTCTTAAATCTTCAACTTaGGCATTTCTCAATCCTGGA +
Preference number: 5 (lower is better)
Translates to: PTPQSLHHSTILGIHTNILKSST*AFLNPG
Trigger: TCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAG...AATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGATTGAGGGGTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS-3UTR CAA 90 bp TCTCTTCACCACAGCACAATATTAGGAATTCATACTAACATTACAAAGCCCAGATTCTTAAGATCTGGTTaGCAACATTCAGGAGAAGAA +
Preference number: 5 (lower is better)
Translates to: SLHHSTILGIHTNITKPRFLRSG*QHSGEE
Trigger: TTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAA...TCTGGGCTTTGTAATGTTAGTATGAATTCCTAATATTGTGCTGTGGTGAAGAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000509972.1
CDS CCA 72 bp CCTCCACCCGCCCGCGGCCTCGCGGTCCGCACGGACTaGGCGCAGCGGGGGCTTCCAAACCTGTCTCGCAGG +
Preference number: 6 (lower is better)
Translates to: PPPARGLAVRTD*AQRGLPNLSRR
Trigger: CCTGCGAGACAGGTTTGGAAGCCCCCGCTGCGCCCAGTCCGTGCGGACCGCGAGGCCGCGGGCGGGTGGAGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000497512.5
ENST00000502280.5
CDS GCA 72 bp GAGAAGTTGGACCCCTTCATGACCTGCCAAGTGCTCTaGCCCCAAATCCTTCATCGTGCCGGAGACGCGCCT +
Preference number: 6 (lower is better)
Translates to: EKLDPFMTCQVL*PQILHRAGDAP
Trigger: AGGCGCGTCTCCGGCACGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000497512.5
ENST00000502280.5
CDS GCA 72 bp GAGAAGTTGGACCCCTTCATGACCTGCCAAGTGCTCTaGCCCCAAATCCTTCATCTCCAGCAAGGGTCGCCC +
Preference number: 6 (lower is better)
Translates to: EKLDPFMTCQVL*PQILHLQQGSP
Trigger: GGGCGACCCTTGCTGGAGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000512918.5
CDS GCA 72 bp TCTCAGCAGCAGCTTGTCTCTGCACTTGATCCTCTCTaGAGGTCTGCTTCAGGTCCAGGAGCTGTAATCCCA +
Preference number: 6 (lower is better)
Translates to: SQQQLVSALDPL*RSASGPGAVIP
Trigger: TGGGATTACAGCTCCTGGACCTGAAGCAGACCTGCAGAGAGGATCAAGTGCAGAGACAAGCTGCTGCTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 72 bp TTCTTGTTCCAGGTAGACGTTCAACAACCCGAGAAGTaGGACCCCTTCATGACCTGCCAAGTGCTCTGCCCC +
Preference number: 6 (lower is better)
Translates to: FLFQVDVQQPEK*DPFMTCQVLCP
Trigger: GGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
ENST00000512918.5
CDS CAA 90 bp GAATCTCTCTTCTTGTTCCAGGTAGACGTTCAACAACCCGAGAAGTaGGACCCCTTCATGACCTGCCAAGTGCTCTGCCCCCAAATCCTT +
Preference number: 6 (lower is better)
Translates to: ESLFLFQVDVQQPEK*DPFMTCQVLCPQIL
Trigger: AAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
ENST00000512918.5
CDS CCA 72 bp GTTCAGTCCTCCTTGTGTAGCAGTCCAGTTTCCCCTTaGTTGTCAGGAACAATCGCCCTAACCAGTACAGCA +
Preference number: 6 (lower is better)
Translates to: VQSSLCSSPVSP*LSGTIALTSTA
Trigger: TGCTGTACTGGTTAGGGCGATTGTTCCTGACAACCAAGGGGAAACTGGACTGCTACACAAGGAGGACTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS TCA 72 bp AGAAGGTGCACTCTTGATCACTGGGAGGAGAGCTGCTaGGACTCTCCTCTCCACAACTCATATCTTCACAAG +
Preference number: 6 (lower is better)
Translates to: RRCTLDHWEESC*DSPLHNSYLHK
Trigger: CTTGTGAAGATATGAGTTGTGGAGAGGAGAGTCTCAGCAGCTCTCCTCCCAGTGATCAAGAGTGCACCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000502280.5
CDS CAA 72 bp TTAGAAGAGGTCCCCTATGATGATCTCAGCAGCAGCTaGTCTCTGCACTTGATCCTCTCTGCAGGTCTGCTT +
Preference number: 6 (lower is better)
Translates to: LEEVPYDDLSSS*SLHLILSAGLL
Trigger: AAGCAGACCTGCAGAGAGGATCAAGTGCAGAGACAAGCTGCTGCTGAGATCATCATAGGGGACCTCTTCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 90 bp ATTCTCCGGGGTAGCCTCAATCAAACTCAGCCCTTTTTCTCGAGGTaGGAATCTCTCTTCTTGTTCCAGGTAGACGTTCAACAACCCGAG +
Preference number: 6 (lower is better)
Translates to: ILRGSLNQTQPFFSR*ESLFLFQVDVQQPE
Trigger: CTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTTTGATTGAGGCTACCCCGGAGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
ENST00000512918.5
CDS TCA 72 bp CCAAACTCCTCAGGCCCTTTCCCCTTCCAGGCAAAATaGACAATCAGGTTTACTGTTCAAAGTTCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: PNSSGPFPFQAK*TIRFTVQSSGC
Trigger: GCAGCCAGAACTTTGAACAGTAAACCTGATTGTTCATTTTGCCTGGAAGGGGAAAGGGCCTGAGGAGTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000514756.1
CDS CAA 72 bp ACAATCGCCCTAACCAGTACAGCAACTCCTTTACTTTaGAATCAGAGGTATGAGGCAGCCGGCCATCTCAAC +
Preference number: 6 (lower is better)
Translates to: TIALTSTATPLL*NQRYEAAGHLN
Trigger: GTTGAGATGGCCGGCTGCCTCATACCTCTGATTCAAAAGTAAAGGAGTTGCTGTACTGGTTAGGGCGATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 90 bp CTCAATCAAACTCAGCCCTTTTTCTCGAGGTTGGAATCTCTCTTCTaGTTCCAGGTAGACGTTCAACAACCCGAGAAGTTGGACCCCTTC +
Preference number: 6 (lower is better)
Translates to: LNQTQPFFSRLESLF*FQVDVQQPEKLDPF
Trigger: GAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTTTGATTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
ENST00000512918.5
CDS CAA 72 bp ACTCAGCCCTTTTTCTCGAGGTTGGAATCTCTCTTCTaGTTCCAGGTAGACGTTCAACAACCCGAGAAGTTG +
Preference number: 6 (lower is better)
Translates to: TQPFFSRLESLF*FQVDVQQPEKL
Trigger: CAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
ENST00000512918.5
CDS CAA 72 bp GCAGCCGGCCATCTCAACTTTAACAGAGTCATTATTTaGTCTCCTGGTAGAGTCATTCCTCCCTTAGGCTCT +
Preference number: 6 (lower is better)
Translates to: AAGHLNFNRVII*SPGRVIPPLGS
Trigger: AGAGCCTAAGGGAGGAATGACTCTACCAGGAGACAAAATAATGACTCTGTTAAAGTTGAGATGGCCGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000497512.5
ENST00000514756.1
CDS TCA 72 bp ATAGTAGCTGTTGTGGAGGTTCTGGGCTGTGCGCCTTaGAACGATCCAAACCAACTTCTTAAGATCTGGTTT +
Preference number: 6 (lower is better)
Translates to: IVAVVEVLGCAP*NDPNQLLKIWF
Trigger: AAACCAGATCTTAAGAAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAGCTACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
CDS CAA 90 bp ATGTTGAGATTCATTGCAAGGACTTGTTTTATGCAATTGTGGAAGTaGGCAAGGCAAGCCCATTATCCACAGATAGGGAAGGCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: MLRFIARTCFMQLWK*ARQAHYPQIGKAFR
Trigger: CCTGAAAGCCTTCCCTATCTGTGGATAATGGGCTTGCCTTGCCAACTTCCACAATTGCATAAAACAAGTCCTTGCAATGAATCTCAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 72 bp TTCATTGCAAGGACTTGTTTTATGCAATTGTGGAAGTaGGCAAGGCAAGCCCATTATCCACAGATAGGGAAG +
Preference number: 6 (lower is better)
Translates to: FIARTCFMQLWK*ARQAHYPQIGK
Trigger: CTTCCCTATCTGTGGATAATGGGCTTGCCTTGCCAACTTCCACAATTGCATAAAACAAGTCCTTGCAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 72 bp CTTGAAACGATCCAAACCAACTTCTTAAGATCTGGTTaGCAACATTCAGGAGAAGAATACTCGGCTAGGCAT +
Preference number: 6 (lower is better)
Translates to: LETIQTNFLRSG*QHSGEEYSARH
Trigger: ATGCCTAGCCGAGTATTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTGGTTTGGATCGTTTCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
CDS CAA 72 bp ATGTTGAGATTCATTGCAAGGACTTGTTTTATGCAATaGTGGAAGTTGGCAAGGCAAGCCCATTATCCACAG +
Preference number: 6 (lower is better)
Translates to: MLRFIARTCFMQ*WKLARQAHYPQ
Trigger: CTGTGGATAATGGGCTTGCCTTGCCAACTTCCACAATTGCATAAAACAAGTCCTTGCAATGAATCTCAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CAA 90 bp GATTTTCACATTTTACTCTTTGAAATGAGACTACCAGTGGCAGCATaGGAAGGTCACAGCACTTCCTCAGGAACTCATATGTTAGAAGAG +
Preference number: 6 (lower is better)
Translates to: DFHILLFEMRLPVAA*EGHSTSSGTHMLEE
Trigger: CTCTTCTAACATATGAGTTCCTGAGGAAGTGCTGTGACCTTCCAATGCTGCCACTGGTAGTCTCATTTCAAAGAGTAAAATGTGAAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS TCA 72 bp TTTGAAAAGATGAGTCGGCAGTTGCAAGCTTTCAGCTaGGCTTCTAGTTTATCAAGGCTCAGTATTTCTTTC +
Preference number: 6 (lower is better)
Translates to: FEKMSRQLQAFS*ASSLSRLSISF
Trigger: GAAAGAAATACTGAGCCTTGATAAACTAGAAGCTCAGCTGAAAGCTTGCAACTGCCGACTCATCTTTTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000316355.10
ENST00000395640.5
ENST00000497512.5
ENST00000502280.5
ENST00000509972.1
CDS CCA 72 bp TTGAGATTCATTGCAAGGACTTGTTTTATGCAATTGTaGAAGTTGGCAAGGCAAGCCCATTATCCACAGATA +
Preference number: 6 (lower is better)
Translates to: LRFIARTCFMQL*KLARQAHYPQI
Trigger: TATCTGTGGATAATGGGCTTGCCTTGCCAACTTCCACAATTGCATAAAACAAGTCCTTGCAATGAATCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CCA 72 bp TATAGAGACGTGATGAGTAAGTTCAATGTCATACCCTaGATGGGATTCTTTTTGAATGAAGAGCTGCAAATC +
Preference number: 6 (lower is better)
Translates to: YRDVMSKFNVIP*MGFFLNEELQI
Trigger: GATTTGCAGCTCTTCATTCAAAAAGAATCCCATCCAGGGTATGACATTGAACTTACTCATCACGTCTCTATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000497512.5
CDS CCA 72 bp GGCAAAATGAACAATCAGGTTTACTGTTCAAAGTTCTaGCTGCAGAAAGGATTTTCCTTCATCAGCATTCTT +
Preference number: 6 (lower is better)
Translates to: GKMNNQVYCSKF*LQKGFSFISIL
Trigger: AAGAATGCTGATGAAGGAAAATCCTTTCTGCAGCCAGAACTTTGAACAGTAAACCTGATTGTTCATTTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000514756.1