Pregenerated sensors for CCNB1IP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000100814Ensembl transcript IDs: ENST00000353689.8, ENST00000358932.9, ENST00000398160.6, ENST00000398163.6, ENST00000398169.7, ENST00000437553.6, ENST00000553516.5, ENST00000554047.1, ENST00000555963.1, ENST00000557665.5
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GACTATAAGGTCTGTCTTACTAGGAGACACACTCCCTTGCTGGCTTaGAGGAAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTA | + |
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Preference number: 2 (lower is better) Translates to: DYKVCLTRRHTPLLA*RKQAVMSGRPKRQV Trigger: TACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAGTGTGTCTCCTAGTAAGACAGACCTTATAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR CCA 90 bp | AAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCAGGGTAAAATCCAGGTaGATCTTGGATTTGGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: KQAVMSGRPKRQVTKNSLRVKSR*ILDLAV Trigger: CACTGCCAAATCCAAGATCCACCTGGATTTTACCCT...GAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCAAACTTAAAAATCTCTaGTCTGTGAAAGACCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: KQAVMSGRPKRQVTKNSLKLKNL*SVKDPR Trigger: TCTGGGGTCTTTCACAGAGCAGAGATTTTTAAGTTT...GAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR TCA 90 bp | AATGTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCCTCCCTTGCTGGCTTTaGGGAAGCAAGCAGTCATGT | + |
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Preference number: 2 (lower is better) Translates to: NVTGCHFISILPKTIRSVLPCWL*GSKQSC Trigger: ACATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAG...GACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR GCA 90 bp | AATGTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCATACATTCAAGGACATaGTTAAAGTCATCCACAGGG | + |
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Preference number: 2 (lower is better) Translates to: NVTGCHFISILPKTIRSVIHSRT*LKSSTG Trigger: CCCTGTGGATGACTTTAAGCATGTCCTTGAATGTAT...GACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCACATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR CAA 90 bp | AATGTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCAGGAGACACACTCCCTaGCTGGCTTTGAGGAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: NVTGCHFISILPKTIRSVRRHTP*LALRKQ Trigger: TTGCTTCCTCAAAGCCAGCAAGGGAGTGTGTCTCCT...GACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR-3UTR CAA 90 bp | AATGTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCAGGTGGATCTTGGATTaGGCAGTGACTTTTAAAATA | + |
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Preference number: 3 (lower is better) Translates to: NVTGCHFISILPKTIRSVRWILD*AVTFKI Trigger: TATTTTAAAAGTCACTGCCAAATCCAAGATCCACCT...GACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR CAA 72 bp | GTCTGTCTTACTAGGAGACACACTCCCTTGCTGGCTTaGAGGAAGCAAGCAGTCATGTCAGGAAGGCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: VCLTRRHTPLLA*RKQAVMSGRPK Trigger: CTTGGGCCTTCCTGACATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAGTGTGTCTCCTAGTAAGACAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR TCA 90 bp | GCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCTGGCCACTCCCTTGCTGGCTTTaGGGAAGCAAGCAGTCATGT | + |
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Preference number: 4 (lower is better) Translates to: AVMSGRPKRQVTKNSLWPLPCWL*GSKQSC Trigger: ACATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAG...TGGCCAGAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| 3UTR CAA 72 bp | GACTATAAGGTCTGTCTTACTAGGAGACACACTCCCTaGCTGGCTTTGAGGAAGCAAGCAGTCATGTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: DYKVCLTRRHTP*LALRKQAVMSG Trigger: TCCTGACATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAGTGTGTCTCCTAGTAAGACAGACCTTATAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR TCA 90 bp | AAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCTTTCAAAGGAAATACTaGTATGTCCAGAAGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KQAVMSGRPKRQVTKNSLFQRKY*YVQKAS Trigger: GCTGGCCTTCTGGACATATCAGTATTTCCTTTGAAA...GAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR GCA 90 bp | AAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCATACATTCAAGGACATaGTTAAAGTCATCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: KQAVMSGRPKRQVTKNSLIHSRT*LKSSTG Trigger: CCCTGTGGATGACTTTAAGCATGTCCTTGAATGTAT...GAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR GCA 90 bp | GTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCTTAAAACTTAAAAATCTCTaGTCTGTGAAAGACCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VTGCHFISILPKTIRSVLKLKNL*SVKDPR Trigger: TCTGGGGTCTTTCACAGAGCAGAGATTTTTAAGTTT...TAAGACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS GCA 90 bp | ATTCTCTGCGAGCGAGTGCTTCAGGGAACTACGCCAGAGCGCGCATaGGTGGGGTTGCCCCGAAGCATCCTGGGACCTGCCAGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ILCERVLQGTTPERA*VGLPRSILGPARLR Trigger: CCTCAGCCTGGCAGGTCCCAGGATGCTTCGGGGCAACCCCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTCGCAGAGAAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 90 bp | TCCACAGCTCCACAAGCGAAGATTCCAGGATTCTCTGCGAGCGAGTaGTTCAGGGAACTACGCCAGAGCGCGCATGCGTGGGGTTGCCCC | + |
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Preference number: 5 (lower is better) Translates to: STAPQAKIPGFSASE*FRELRQSAHAWGCP Trigger: GGGGCAACCCCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTCGCAGAGAATCCTGGAATCTTCGCTTGTGGAGCTGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 90 bp | CTCCGTTGCCTCCACAGCTCCACAAGCGAAGATTCCAGGATTCTCTaGGAGCGAGTGCTTCAGGGAACTACGCCAGAGCGCGCATGCGTG | + |
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Preference number: 5 (lower is better) Translates to: LRCLHSSTSEDSRIL*ERVLQGTTPERACV Trigger: CACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTCGCAGAGAATCCTGGAATCTTCGCTTGTGGAGCTGTGGAGGCAACGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 90 bp | GTTCCTGGGTCACCAGGACTCGGAGACGGAAGGCAAACCCAGTACTaGAGAGGCCCACGTGGAAACAAGCCAGGAAGAGCATTTCACTGC | + |
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Preference number: 5 (lower is better) Translates to: VPGSPGLGDGRQTQY*RGPRGNKPGRAFHC Trigger: GCAGTGAAATGCTCTTCCTGGCTTGTTTCCACGTGGGCCTCTGCAGTACTGGGTTTGCCTTCCGTCTCCGAGTCCTGGTGACCCAGGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS GCA 90 bp | GAAGAGAGGCCTGAGGCTGAAAGAAAAAGCGCGGAAAAACTCCGTTaGCTCCACAGCTCCACAAGCGAAGATTCCAGGATTCTCTGCGAG | + |
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Preference number: 5 (lower is better) Translates to: EERPEAERKSAEKLR*LHSSTSEDSRILCE Trigger: CTCGCAGAGAATCCTGGAATCTTCGCTTGTGGAGCTGTGGAGGCAACGGAGTTTTTCCGCGCTTTTTCTTTCAGCCTCAGGCCTCTCTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000398169.7 |
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| CDS GCA 90 bp | AAGAGAGGCTCTGAGGCTGAAAGAAAAAGCGCGGAAAAACTCCGTTaGCTCCACAGCTCCACAAGCGAAGATTCCAGGATTCTCTGCGAG | + |
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Preference number: 5 (lower is better) Translates to: KRGSEAERKSAEKLR*LHSSTSEDSRILCE Trigger: CTCGCAGAGAATCCTGGAATCTTCGCTTGTGGAGCTGTGGAGGCAACGGAGTTTTTCCGCGCTTTTTCTTTCAGCCTCAGAGCCTCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000437553.6 |
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| CDS-3UTR CAA 90 bp | AAGCAAGCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCAGGAGACACACTCCCTaGCTGGCTTTGAGGAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: KQAVMSGRPKRQVTKNSLRRHTP*LALRKQ Trigger: TTGCTTCCTCAAAGCCAGCAAGGGAGTGTGTCTCCT...GAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGCTTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR CAA 90 bp | GCAGTCATGTCAGGAAGGCCCAAGAGACAAGTAACTAAGAACAGCCTCTGGCCAAAATCCAGGTGGATCTaGGATTTGGCAGTGACTTTT | + |
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Preference number: 5 (lower is better) Translates to: AVMSGRPKRQVTKNSLWPKSRWI*DLAVTF Trigger: AAAAGTCACTGCCAAATCCAAGATCCACCTGGATTT...TGGCCAGAGGCTGTTCTTAGTTACTTGTCTCTTGGGCCTTCCTGACATGACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS TCA 90 bp | CCGAAATTAATCTCCTTGCGACTCACACACACTCCTATGCCGACTTaGAATAAAGGCCTGCCACCTGGGTATATAACTCAAATGGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: PKLISLRLTHTPMPT*NKGLPPGYITQMEE Trigger: CTCTTCCATTTGAGTTATATACCCAGGTGGCAGGCCTTTATTTCAAGTCGGCATAGGAGTGTGTGTGAGTCGCAAGGAGATTAATTTCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS-3UTR CAA 90 bp | GTGACAGGTTGTCACTTCATAAGTATATTACCTAAGACTATAAGGTCTGTCTTAACTCCCTTGCTGGCTTaGAGGAAGCAAGCAGTCATG | + |
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Preference number: 5 (lower is better) Translates to: VTGCHFISILPKTIRSVLTPLLA*RKQAVM Trigger: CATGACTGCTTGCTTCCTCAAAGCCAGCAAGGGAGT...TAAGACAGACCTTATAGTCTTAGGTAATATACTTATGAAGTGACAACCTGTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS-3UTR CAA 90 bp | AAATCCAGGTGGATCTTGGATTTGGCAGTGACTTTTAAAATACACCAAAGGTATAGGTGGATCTTGGATTaGGCAGTGACTTTTAAAATA | + |
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Preference number: 5 (lower is better) Translates to: KSRWILDLAVTFKIHQRYRWILD*AVTFKI Trigger: TATTTTAAAAGTCACTGCCAAATCCAAGATCCACCT...ATACCTTTGGTGTATTTTAAAAGTCACTGCCAAATCCAAGATCCACCTGGATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000554047.1 |
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| CDS GCA 72 bp | CGCATGCGTGGGGTTGCCCCGAAGCATCCTGGGACCTaGCAGGCTGAGGGAGTTGCGGGCCGCAGCTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: RMRGVAPKHPGT*QAEGVAGRSSG Trigger: GCCGGAGCTGCGGCCCGCAACTCCCTCAGCCTGGCAGGTCCCAGGATGCTTCGGGGCAACCCCACGCATGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 72 bp | GAGCGAGTGCTTCAGGGAACTACGCCAGAGCGCGCATaGGTGGGGTTGCCCCGAAGCATCCTGGGACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ERVLQGTTPERA*VGLPRSILGPA Trigger: GGCAGGTCCCAGGATGCTTCGGGGCAACCCCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS CCA 72 bp | GAGTGCTTCAGGGAACTACGCCAGAGCGCGCATGCGTaGGGTTGCCCCGAAGCATCCTGGGACCTGCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: ECFRELRQSAHA*GCPEASWDLPG Trigger: GCCTGGCAGGTCCCAGGATGCTTCGGGGCAACCCCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS CAA 72 bp | CTTCAGGGAACTACGCCAGAGCGCGCATGCGTGGGGTaGCCCCGAAGCATCCTGGGACCTGCCAGGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LQGTTPERACVG*PRSILGPARLR Trigger: CCTCAGCCTGGCAGGTCCCAGGATGCTTCGGGGCAACCCCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 72 bp | CCACAAGCGAAGATTCCAGGATTCTCTGCGAGCGAGTaGTTCAGGGAACTACGCCAGAGCGCGCATGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: PQAKIPGFSASE*FRELRQSAHAW Trigger: CCACGCATGCGCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTCGCAGAGAATCCTGGAATCTTCGCTTGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 72 bp | CTCCACAGCTCCACAAGCGAAGATTCCAGGATTCTCTaGGAGCGAGTGCTTCAGGGAACTACGCCAGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: LHSSTSEDSRIL*ERVLQGTTPER Trigger: GCGCTCTGGCGTAGTTCCCTGAAGCACTCGCTCGCAGAGAATCCTGGAATCTTCGCTTGTGGAGCTGTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398169.7 ENST00000437553.6 ENST00000553516.5 |
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| CDS GCA 72 bp | TCACCAGGACTCGGAGACGGAAGGCAAACCCAGTACTaGAGAGGCCCACGTGGAAACAAGCCAGGAAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: SPGLGDGRQTQY*RGPRGNKPGRA Trigger: TGCTCTTCCTGGCTTGTTTCCACGTGGGCCTCTGCAGTACTGGGTTTGCCTTCCGTCTCCGAGTCCTGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS CCA 72 bp | TCAAGTGATCCTCCCAGCCTCAACCTCCTAAGTAGCTaGGATCACAGGTGCGTGACACTATGCGTGGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: SSDPPSLNLLSS*DHRCVTLCVAQ Trigger: TTGAGCCACGCATAGTGTCACGCACCTGTGATCCCAGCTACTTAGGAGGTTGAGGCTGGGAGGATCACTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000353689.8 ENST00000358932.9 ENST00000398160.6 ENST00000398163.6 ENST00000398169.7 ENST00000437553.6 |
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| CDS CAA 72 bp | AAGAACACACGCACTGTGCACATGAAGCACAGTCTATaGTTCCTGGGTCACCAGGACTCGGAGACGGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: KNTRTVHMKHSL*FLGHQDSETEG Trigger: GCCTTCCGTCTCCGAGTCCTGGTGACCCAGGAACAATAGACTGTGCTTCATGTGCACAGTGCGTGTGTTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS CAA 90 bp | GCGTTTTCCAAGAACACACGCACTGTGCACATGAAGCACAGTCTATaGTTCCTGGGTCACCAGGACTCGGAGACGGAAGGCAAACCCAGT | + |
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Preference number: 6 (lower is better) Translates to: AFSKNTRTVHMKHSL*FLGHQDSETEGKPS Trigger: ACTGGGTTTGCCTTCCGTCTCCGAGTCCTGGTGACCCAGGAACAATAGACTGTGCTTCATGTGCACAGTGCGTGTGTTCTTGGAAAACGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS GCA 72 bp | GGCCCACGTGGAAACAAGCCAGGAAGAGCATTTCACTaGCTTCTCCCAACCTCCACACAGCCGAAATTAATC | + |
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Preference number: 6 (lower is better) Translates to: GPRGNKPGRAFH*LLPTSTQPKLI Trigger: GATTAATTTCGGCTGTGTGGAGGTTGGGAGAAGGCAGTGAAATGCTCTTCCTGGCTTGTTTCCACGTGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555963.1 ENST00000557665.5 |
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| CDS GCA 72 bp | CCTGAGGCTGAAAGAAAAAGCGCGGAAAAACTCCGTTaGCTCCACAGCTCCACAAGCGAAGATTCCAGGATT | + |
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Preference number: 6 (lower is better) Translates to: PEAERKSAEKLR*LHSSTSEDSRI Trigger: AATCCTGGAATCTTCGCTTGTGGAGCTGTGGAGGCAACGGAGTTTTTCCGCGCTTTTTCTTTCAGCCTCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000398169.7 |
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| CDS GCA 72 bp | TCTGAGGCTGAAAGAAAAAGCGCGGAAAAACTCCGTTaGCTCCACAGCTCCACAAGCGAAGATTCCAGGATT | + |
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Preference number: 6 (lower is better) Translates to: SEAERKSAEKLR*LHSSTSEDSRI Trigger: AATCCTGGAATCTTCGCTTGTGGAGCTGTGGAGGCAACGGAGTTTTTCCGCGCTTTTTCTTTCAGCCTCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000437553.6 ENST00000553516.5 |
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| CDS TCA 72 bp | GTGGATTTCATCTTCAACCGGAGAATTAAACTCTACTaGGCTGAACGCCTTCTCCCGAAATCTGACCTCACC | + |
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Preference number: 6 (lower is better) Translates to: VDFIFNRRIKLY*AERLLPKSDLT Trigger: GGTGAGGTCAGATTTCGGGAGAAGGCGTTCAGCTCAGTAGAGTTTAATTCTCCGGTTGAAGATGAAATCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398160.6 ENST00000557665.5 |
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