RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCN1 (Homo sapiens)

Ensembl gene IDs: ENSG00000142871

Ensembl transcript IDs: ENST00000451137.7, ENST00000480413.1, ENST00000674743.1, ENST00000674818.1, ENST00000675083.1, ENST00000676007.1

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTaGAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGT +
Preference number: 1 (lower is better)
Translates to: LRSGTASSQSWSAGA*SIGRPRRNRSTWAG
Trigger: ACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 90 bp TCCCCATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTaGGGCGTGCAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTG +
Preference number: 1 (lower is better)
Translates to: SPSSQRNRIFTVLVS*GVQHRPSTQEPQYL
Trigger: CAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR TCA 90 bp TGGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATaGCGTTCTTGGAAAATGTCTCCCCATCTTCGCAGCGGAACCGCA +
Preference number: 1 (lower is better)
Translates to: WHAGSCSCICRTGSS*RSWKMSPHLRSGTA
Trigger: TGCGGTTCCGCTGCGAAGATGGGGAGACATTTTCCAAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 90 bp TTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTaGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGC +
Preference number: 1 (lower is better)
Translates to: FSNRGCISVHPHQHP*QFRNTLMLLKNEQG
Trigger: GCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR GCA 90 bp CCTAAATTTGTGAATGTCATTGAACAGCCTGTAGAAGGGAAACGCTaGTTCATTGGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTG +
Preference number: 1 (lower is better)
Translates to: PKFVNVIEQPVEGKR*FIGMRAVVVAFAGL
Trigger: CAGTCCTGCAAATGCAACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTCCCTTCTACAGGCTGTTCAATGACATTCACAAATTTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 90 bp CCGGTATTTCTTCACACTCAAACATCCAGCGTAAGTAAACCTGACTaGTTCGGGGGATTTCTTGGTCTTGCTGCATTTCTTGCCCTTTTT +
Preference number: 1 (lower is better)
Translates to: PVFLHTQTSSVSKPD*FGGFLGLAAFLALF
Trigger: AAAAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTACGCTGGATGTTTGAGTGTGAAGAAATACCGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR TCA 90 bp CTCCACAAGCTCCAAAATGAAGCAGTAACATGTGCTCCAATACTATaGAGCAAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCG +
Preference number: 1 (lower is better)
Translates to: LHKLQNEAVTCAPIL*SKVFSNRGCISVHP
Trigger: CGGATGGACACTAATGCAGCCACGATTGGAGAATACTTTGCTTCATAGTATTGGAGCACATGTTACTGCTTCATTTTGGAGCTTGTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR TCA 90 bp ATACCAGTTCCACAGGTCTTTGAGCACTGGGACCATGAAGTTGTTTaGACAATACATTTCTGGCCTTGTAAAGGGTTGTATAGGATGCGA +
Preference number: 1 (lower is better)
Translates to: IPVPQVFEHWDHEVV*TIHFWPCKGLYRMR
Trigger: TCGCATCCTATACAACCCTTTACAAGGCCAGAAATGTATTGTTCAAACAACTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR TCA 90 bp CATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCAGGGAGCCGCTTCAGTaGGCTGCCTTTTCCAACTGC +
Preference number: 2 (lower is better)
Translates to: HLRSGTASSQSWSAGACSREPLQ*AAFSNC
Trigger: GCAGTTGGAAAAGGCAGCTCACTGAAGCGGCTCCCT...GCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAACCGCACCAGCACCCTTaGCAGTTTCGAAATACCTTA +
Preference number: 2 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEPHQHP*QFRNTL
Trigger: TAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGG...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR TCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAACCACAAGCTCCAAAATaGAGCAGTAACATGTGCTCC +
Preference number: 2 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEPQAPK*SSNMCS
Trigger: GGAGCACATGTTACTGCTTCATTTTGGAGCTTGTGG...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR TCA 90 bp AGGGAAACGCTGCTTCATTGGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGCTTCCTTTCTACAATaGGTCCCATCACCCACACCA +
Preference number: 2 (lower is better)
Translates to: RETLLHWHAGSCSCICRTASFLQ*VPSPTP
Trigger: TGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGC...AGTCCTGCAAATGCAACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR TCA 90 bp CAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCTTCACAGACCATGAAGTTGTTTaGACAATACATTTCTGGCCT +
Preference number: 2 (lower is better)
Translates to: QHRPSTQEPQYLGRYFFTDHEVV*TIHFWP
Trigger: AGGCCAGAAATGTATTGTTCAAACAACTTCATGGTC...TGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR GCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCTTCTCCAATCGTGGCTaGATTAGTGTCCATCCGCAC +
Preference number: 2 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVFSNRG*ISVHPH
Trigger: GTGCGGATGGACACTAATGCAGCCACGATTGGAGAA...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR GCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAACAGGAAGGGATGGAATaGCCTCCCATTTACTTTTGT +
Preference number: 2 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEQEGME*PPIYFC
Trigger: ACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTG...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR GCA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTTGCCCTTTTTCAGGCTaGTGTACACTGGCTGTCCAC +
Preference number: 2 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLCPFSG*CTLAVH
Trigger: GTGGACAGCCAGTGTACAGCAGCCTGAAAAAGGGCA...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR GCA 90 bp ACTCGTGTGGAGATACCAGTTCCACAGGTCTTTGAGCACTGGGACCATGAAGTTGCCGCTTCAGTGAGCTaGCTTTTCCAACTGCAATCA +
Preference number: 2 (lower is better)
Translates to: TRVEIPVPQVFEHWDHEVAASVS*LFQLQS
Trigger: TGATTGCAGTTGGAAAAGGCAGCTCACTGAAGCGGC...AACTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTGGTATCTCCACACGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR GCA 90 bp GTAAGTAAACCTGACTGGTTCGGGGGATTTCTTGGTCTTGCTGCATTTCTTGCCTTCTCCAATCGTGGCTaGATTAGTGTCCATCCGCAC +
Preference number: 2 (lower is better)
Translates to: VSKPDWFGGFLGLAAFLAFSNRG*ISVHPH
Trigger: GTGCGGATGGACACTAATGCAGCCACGATTGGAGAA...GGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR TCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGCTTCCTTTCTACAATaGGTCCCATCACCCACACCA +
Preference number: 2 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQASFLQ*VPSPTP
Trigger: TGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGC...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR TCA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCATTTGTGAATGTCATTaGACAGCCTGTAGAAGGGAA +
Preference number: 2 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLICECH*TACRRE
Trigger: TTCCCTTCTACAGGCTGTTCAATGACATTCACAAAT...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CCA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAGGAACCGCAGTACTTaGGCCGGTATTTCTTCACAC +
Preference number: 2 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKRNRST*AGISSH
Trigger: GTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCT...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR TCA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTTGTGCTCCAATACTATaGAGCAAAGTATTCTCCAAT +
Preference number: 2 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLCAPIL*SKVFSN
Trigger: ATTGGAGAATACTTTGCTTCATAGTATTGGAGCACA...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAGTTCGGGGGATTTCTTaGTCTTGCTGCATTTCTTGC +
Preference number: 2 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKVRGIS*SCCISC
Trigger: GCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAAC...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR GCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAGCTGCCTTTTCCAACTaGAATCAATTCATTGTTTCT +
Preference number: 2 (lower is better)
Translates to: PFRKGWNALPFTFVKGRIAAFSN*NQFIVS
Trigger: AGAAACAATGAATTGATTGCAGTTGGAAAAGGCAGC...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR TCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAATCCTGTTTGAATAATTaGGTACGTGAGCTAGGTTGT +
Preference number: 2 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKSCLNN*VRELGC
Trigger: ACAACCTAGCTCACGTACTCAATTATTCAAACAGGA...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR CCA 72 bp TCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTaGGGCGTGCAGCATCGGCCGTCCACGCAGGAACCG +
Preference number: 3 (lower is better)
Translates to: SQRNRIFTVLVS*GVQHRPSTQEP
Trigger: CGGTTCCTGCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 72 bp CCCCATCTTCGCAGCGGAACCGCATCTTCACAGTCCTaGTCAGCTGGGGCGTGCAGCATCGGCCGTCCACGC +
Preference number: 3 (lower is better)
Translates to: PHLRSGTASSQS*SAGACSIGRPR
Trigger: GCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR GCA 72 bp GGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTaGAGCATCGGCCGTCCACGCAGGAACCGCAGTACT +
Preference number: 3 (lower is better)
Translates to: GTASSQSWSAGA*SIGRPRRNRST
Trigger: AGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CAA 90 bp CATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCACTCTTCTCCCTTGTTaGTCTAGGTGTGCCCTGGAA +
Preference number: 3 (lower is better)
Translates to: HLRSGTASSQSWSAGACSTLLPC*SRCALE
Trigger: TTCCAGGGCACACCTAGACAAACAAGGGAGAAGAGT...GCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 72 bp TGCAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTaGGCCGGTATTTCTTCACACTCAAACATCCAGCGT +
Preference number: 3 (lower is better)
Translates to: CSIGRPRRNRST*AGISSHSNIQR
Trigger: ACGCTGGATGTTTGAGTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 72 bp GCTGCATTTCTTGCCCTTTTTCAGGCTGCTGTACACTaGCTGTCCACAAGGCCGCACCTCACAAATCCGGGT +
Preference number: 3 (lower is better)
Translates to: AAFLALFQAAVH*LSTRPHLTNPG
Trigger: ACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAAAGGGCAAGAAATGCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CAA 90 bp CAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATCGGCCGACTGGGACCATGAAGTaGTTTGAACAATACATTTCT +
Preference number: 3 (lower is better)
Translates to: QRNRIFTVLVSWGVQHRPTGTMK*FEQYIS
Trigger: AGAAATGTATTGTTCAAACAACTTCATGGTCCCAGT...CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR TCA 72 bp TGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATaGGTCCCATCACCCACACCACCCCCGCCCATTTTC +
Preference number: 3 (lower is better)
Translates to: CSSRMSKASFLQ*VPSPTPPPPIF
Trigger: GAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR CAA 90 bp TGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAATCCGCACCAGCACCCTaGGCAGTTTCGAAATACCTT +
Preference number: 3 (lower is better)
Translates to: CTLAVHKAAPHKSGFLSQSAPAP*AVSKYL
Trigger: AAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGA...TTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CAA 90 bp AAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGACTCTTCTCCCTTGTTaGTCTAGGTGTGCCCTGGAA +
Preference number: 3 (lower is better)
Translates to: KVFSNRGCISVHPHQHPWTLLPC*SRCALE
Trigger: TTCCAGGGCACACCTAGACAAACAAGGGAGAAGAGT...CCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAATACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR CAA 90 bp GTAAGTAAACCTGACTGGTTCGGGGGATTTCTTGGTCTTGCTGCATTTCTTGCCTGGCCTTGTAAAGGGTaGTATAGGATGCGAGGCTCC +
Preference number: 3 (lower is better)
Translates to: VSKPDWFGGFLGLAAFLAWPCKG*YRMRGS
Trigger: GGAGCCTCGCATCCTATACAACCCTTTACAAGGCCA...GGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CAA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCCACTCAGGGTTGTCATaGGTAACTCGTGTGGAGATA +
Preference number: 3 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVHSGLS*VTRVEI
Trigger: TATCTCCACACGAGTTACCAATGACAACCCTGAGTG...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 72 bp CGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTaGCAGTTTCGAAATACCTTAATGCTCCTCAAGAAT +
Preference number: 3 (lower is better)
Translates to: RGCISVHPHQHP*QFRNTLMLLKN
Trigger: ATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR CCA 72 bp ACAGACACTCATGGAGTGTCCCCCTTCAGGAAGGGATaGAATGCCCTCCCATTTACTTTTGTCAAAGGACGA +
Preference number: 3 (lower is better)
Translates to: TDTHGVSPFRKG*NALPFTFVKGR
Trigger: TCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR CAA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAACACCTGATTTCTGTTaGCAGTTTAGAGTGCAGATA +
Preference number: 3 (lower is better)
Translates to: PIVAALVSIRTSTLGSFETPDFC*QFRVQI
Trigger: TATCTGCACTCTAAACTGCAAACAGAAATCAGGTGT...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR TCA 72 bp GGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATaGCGTTCTTGGAAAATGTCTCCCCATCTTCGCAGC +
Preference number: 3 (lower is better)
Translates to: GSCSCICRTGSS*RSWKMSPHLRS
Trigger: GCTGCGAAGATGGGGAGACATTTTCCAAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR-3UTR CAA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCACACCTGATTTCTGTTaGCAGTTTAGAGTGCAGATA +
Preference number: 3 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLTPDFC*QFRVQI
Trigger: TATCTGCACTCTAAACTGCAAACAGAAATCAGGTGT...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR GCA 72 bp CACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATaGCCTCCCATTTACTTTTGTCAAAGGACGAATAAA +
Preference number: 3 (lower is better)
Translates to: HSWSVPLQEGME*PPIYFCQRTNK
Trigger: TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR GCA 72 bp GTGAATGTCATTGAACAGCCTGTAGAAGGGAAACGCTaGTTCATTGGCATGCGGGCAGTTGTAGTTGCATTT +
Preference number: 3 (lower is better)
Translates to: VNVIEQPVEGKR*FIGMRAVVVAF
Trigger: AAATGCAACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTCCCTTCTACAGGCTGTTCAATGACATTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CCA 72 bp CTTCACACTCAAACATCCAGCGTAAGTAAACCTGACTaGTTCGGGGGATTTCTTGGTCTTGCTGCATTTCTT +
Preference number: 3 (lower is better)
Translates to: LHTQTSSVSKPD*FGGFLGLAAFL
Trigger: AAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTACGCTGGATGTTTGAGTGTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR TCA 72 bp CCACAGGTCTTTGAGCACTGGGACCATGAAGTTGTTTaGACAATACATTTCTGGCCTTGTAAAGGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: PQVFEHWDHEVV*TIHFWPCKGLY
Trigger: ATACAACCCTTTACAAGGCCAGAAATGTATTGTTCAAACAACTTCATGGTCCCAGTGCTCAAAGACCTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR TCA 72 bp CTCCAAAATGAAGCAGTAACATGTGCTCCAATACTATaGAGCAAAGTATTCTCCAATCGTGGCTGCATTAGT +
Preference number: 3 (lower is better)
Translates to: LQNEAVTCAPIL*SKVFSNRGCIS
Trigger: ACTAATGCAGCCACGATTGGAGAATACTTTGCTTCATAGTATTGGAGCACATGTTACTGCTTCATTTTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR-3UTR CAA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAGCTTCAGAATCTTTATaGTGCTTCATACAATGTCGT +
Preference number: 3 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKASESL*CFIQCR
Trigger: ACGACATTGTATGAAGCACAATAAAGATTCTGAAGC...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp GGCGTGCAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCCCAAGGAGGCCGTCCTaGTCCTCCATGGGGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GVQHRPSTQEPQYLGRYFPRRPS*SSMGSL
Trigger: CAAGGACCCCATGGAGGACCAGGACGGCCTCCTTGG...GAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCACGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAACTCCCGGCGCGCACTTaGGCGCCTCCAGGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFELPART*APPGGS
Trigger: ACTGCCCCCTGGAGGCGCCCAAGTGCGCGCCGGGAG...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp CAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATCGGCCGTCAGAGCGGTGGAGCTaGCGCCGAAGTTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: QRNRIFTVLVSWGVQHRPSERWS*RRSCIP
Trigger: TGGAATGCAACTTCGGCGCCAGCTCCACCGCTCTGA...CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp TCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCG +
Preference number: 4 (lower is better)
Translates to: SSQRNRIFTVLVSWGVQHVWSQG*VLLQSS
Trigger: CGAGGACTGCAGCAAAACGCAGCCCTGCGACCACAC...ATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp CAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATCGGCCGGTAGAAGGGAAACGCTaGTTCATTGGCATGCGGGCA +
Preference number: 4 (lower is better)
Translates to: QRNRIFTVLVSWGVQHRPVEGKR*FIGMRA
Trigger: TGCCCGCATGCCAATGAAGCAGCGTTTCCCTTCTAC...CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp CCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGAGGGAGCCGCTTCAGTaGGCTGCCTTTTCCAACTGC +
Preference number: 4 (lower is better)
Translates to: PQGRTSQIRVSFTRRHSGREPLQ*AAFSNC
Trigger: GCAGTTGGAAAAGGCAGCTCACTGAAGCGGCTCCCT...CCCTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTGGTCAGCTGGGGCGTaGAGCATCGGCCGTCCACGC +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLWSAGA*SIGRPR
Trigger: GCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCA...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATCGGCCGGTTCGGGGGATTTCTTaGTCTTGCTGCATTTCTTGC +
Preference number: 4 (lower is better)
Translates to: QRNRIFTVLVSWGVQHRPVRGIS*SCCISC
Trigger: GCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAAC...CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAATCAAGTGGAGAAGGGTaGCGACTAAGGCGAGCGCCC +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFESSGEG*RLRRAP
Trigger: GGGCGCTCGCCTTAGTCGTCACCCTTCTCCACTTGA...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR TCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAACAGGGTCTGCCCTCTaGCTGAGCTCTGCAGATCCC +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFETGSAL*LSSADP
Trigger: GGGATCTGCAGAGCTCAGTCAGAGGGCAGACCCTGT...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR GCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGGCCAACAAGCTGGTGTaGAGCGGACAGGCCGTGCGC +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKANKLV*SGQAVR
Trigger: GCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGC...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGACAGTCCTGGTCAGCTaGGGCGTGCAGCATCGGCCG +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKTVLVS*GVQHRP
Trigger: CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGT...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR CAA 72 bp GTGCAGCATCGGCCGTCCACGCAGGAACCGCAGTACTaGGGCCGGTATTTCTTCACACTCAAACATCCAGCG +
Preference number: 4 (lower is better)
Translates to: VQHRPSTQEPQY*GRYFFTLKHPA
Trigger: CGCTGGATGTTTGAGTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTCCCCTTCAGAGCGGTaGAGCTGGCGCCGAAGTTGC +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLSPSER*SWRRSC
Trigger: GCAACTTCGGCGCCAGCTCCACCGCTCTGAAGGGGA...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTACAGTCCTGGTCAGCTaGGGCGTGCAGCATCGGCCG +
Preference number: 4 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLTVLVS*GVQHRP
Trigger: CGGCCGATGCTGCACGCCCCAGCTGACCAGGACTGT...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp GGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCTTCACACTCAAACCCTCCATGGGGTCCTTaGTACTATCCTCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: GRPRRNRSTWAGISSHSNPPWGP*YYPRHR
Trigger: TCTGTGACGAGGATAGTATCAAGGACCCCATGGAGG...GTTTGAGTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp ATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAA +
Preference number: 4 (lower is better)
Translates to: IRVSFTRRHSGLSLVTRVGDTEE*SPRRHQ
Trigger: TTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCC...CACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAAGACGCCAACAAGCTaGTGTGCAGCGGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKKTPTS*CAADRP
Trigger: CGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTT...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAAGGCAGCGGGGCAGGTaGAGAGCGCCAGCCTGGTCA +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQRQRGR*RAPAWS
Trigger: TGACCAGGCTGGCGCTCTCCACCTGCCCCGCTGCCT...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTTCCAGCCCCTTGGTGTaGTCGCAGGGCTGCGTTTTG +
Preference number: 4 (lower is better)
Translates to: STMSPITHTTPAHFLHDSSSPLV*SQGCVL
Trigger: CAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGA...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCCAGGCTGCTGTACACTaGCTGTCCACAAGGCCGCAC +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVQAAVH*LSTRPH
Trigger: GTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTG...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp ATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGCAGGCTGCTGTACACTaGCTGTCCACAAGGCCGCAC +
Preference number: 4 (lower is better)
Translates to: IRVSFTRRHSGLSLVTRVQAAVH*LSTRPH
Trigger: GTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTG...CACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGGCATCTTCACAGTCCTaGTCAGCTGGGGCGTGCAGC +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKASSQS*SAGACS
Trigger: GCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGC...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTGCATCTTCACAGTCCTaGTCAGCTGGGGCGTGCAGC +
Preference number: 4 (lower is better)
Translates to: STMSPITHTTPAHFLHDSASSQS*SAGACS
Trigger: GCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGC...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGCCGCACCAGCACCCTTaGCAGTTTCGAAATACCTTA +
Preference number: 4 (lower is better)
Translates to: PQGRTSQIRVSFTRRHSGPHQHP*QFRNTL
Trigger: TAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGG...CCCTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTACAGGGTCTGCCCTCTaGCTCTGCAGATCCCCTTCA +
Preference number: 4 (lower is better)
Translates to: STMSPITHTTPAHFLHDSTGSAL*LCRSPS
Trigger: TGAAGGGGATCTGCAGAGTCAGAGGGCAGACCCTGT...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp AAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCACTCCTCGCAGCACTaGCCGGTAACTTTGACCAGC +
Preference number: 4 (lower is better)
Translates to: KVFSNRGCISVHPHQHPWHSSQH*PVTLTS
Trigger: GCTGGTCAAAGTTACCGGGCAGTGCTGCGAGGAGTG...CCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAATACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTCAGAGCGGTGGAGCTaGCGCCGAAGTTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLSERWS*RRSCIP
Trigger: TGGAATGCAACTTCGGCGCCAGCTCCACCGCTCTGA...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAATATATTCACAGGGTCTaGCCTCTGACTGAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEYIHRV*PLTELC
Trigger: GCAGAGCTCAGTCAGAGGGCAGACCCTGTGAATATA...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR GCA 90 bp GCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTGCCGCTTCAGTGAGCTaGCTTTTCCAACTGCAATCA +
Preference number: 4 (lower is better)
Translates to: ARLPFYNESHHPHHPRPFAASVS*LFQLQS
Trigger: TGATTGCAGTTGGAAAAGGCAGCTCACTGAAGCGGC...AAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCTTCTCCAATCGTGGCTaGATTAGTGTCCATCCGCAC +
Preference number: 4 (lower is better)
Translates to: LLYTGCPQGRTSQIRVSFFSNRG*ISVHPH
Trigger: GTGCGGATGGACACTAATGCAGCCACGATTGGAGAA...GAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGTATATTCACAGGGTCTaGCCTCTGACTCTGCAGATC +
Preference number: 4 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQYIHRV*PLTLQI
Trigger: GATCTGCAGAGTCAGAGGGCAGACCCTGTGAATATA...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATACTAAGGCGAGCGCCCTaGCGATGCGGGAGCTCATTG +
Preference number: 4 (lower is better)
Translates to: PFRKGWNALPFTFVKGRILRRAP*RCGSSL
Trigger: CAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAG...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCGCCAGCCTGGTCAAGTaGAGAAGGGTGACGACTAAG +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVASLVK*RRVTTK
Trigger: CTTAGTCGTCACCCTTCTCCACTTGACCAGGCTGGC...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATACCAAGGAGGCCGTCCTaGTCCTCCATGGGGTCCTTG +
Preference number: 4 (lower is better)
Translates to: PFRKGWNALPFTFVKGRIPRRPS*SSMGSL
Trigger: CAAGGACCCCATGGAGGACCAGGACGGCCTCCTTGG...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCAGGAACCGCAGTACTTaGGCCGGTATTTCTTCACAC +
Preference number: 4 (lower is better)
Translates to: LLYTGCPQGRTSQIRVSFRNRST*AGISSH
Trigger: GTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCT...GAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
3UTR CAA 72 bp CGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATaGGTAACTCGTGTGGAGATACCAGTTCCACAGGTC +
Preference number: 4 (lower is better)
Translates to: RVSFTRRHSGLS*VTRVEIPVPQV
Trigger: GACCTGTGGAACTGGTATCTCCACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGCCTCCATGGGGTCCTTaGTACTATCCTCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKPPWGP*YYPRHR
Trigger: TCTGTGACGAGGATAGTATCAAGGACCCCATGGAGG...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CCTTTTTCAGGCTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCCCACAAGCTCCAAAATaGAGCAGTAACATGTGCTCC +
Preference number: 4 (lower is better)
Translates to: PFSGCCTLAVHKAAPHKSPQAPK*SSNMCS
Trigger: GGAGCACATGTTACTGCTTCATTTTGGAGCTTGTGG...GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACACGAGCGCCCTGGCGATaGGGGAGCTCATTGTGGCGC +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTRAPWR*GSSLWR
Trigger: GCGCCACAATGAGCTCCCGCATCGCCAGGGCGCTCG...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR GCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGTGCCCTTTTTCAGGCTaGTGTACACTGGCTGTCCAC +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKCPFSG*CTLAVH
Trigger: GTGGACAGCCAGTGTACAGCAGCCTGAAAAAGGGCA...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp ATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGTGCCCTTTTTCAGGCTaGTGTACACTGGCTGTCCAC +
Preference number: 4 (lower is better)
Translates to: IRVSFTRRHSGLSLVTRVCPFSG*CTLAVH
Trigger: GTGGACAGCCAGTGTACAGCAGCCTGAAAAAGGGCA...CACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACATGGTCAGCTGGGGCGTaGAGCATCGGCCGTCCACGC +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTWSAGA*SIGRPR
Trigger: GCGTGGACGGCCGATGCTGCACGCCCCAGCTGACCA...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTGTAGAAGGGAAACGCTaGTTCATTGGCATGCGGGCA +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLVEGKR*FIGMRA
Trigger: TGCCCGCATGCCAATGAAGCAGCGTTTCCCTTCTAC...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGCAGGAAGGGATGGAATaGCCTCCCATTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQQEGME*PPIYFC
Trigger: ACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTG...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCTGCATTCCAGCCCCTTaGTGTGGTCGCAGGGCTGCG +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITCIPAP*CGRRAA
Trigger: CGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCA...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGGTAAGTAAACCTGACTaGTTCGGGGGATTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQVSKPD*FGGFLG
Trigger: ACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTAC...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp CCTTTTTCAGGCTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCTCAATACATGTGCACTaGTGTTTACAGTTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: PFSGCCTLAVHKAAPHKSSIHVH*CLQLGW
Trigger: CCAGCCCAACTGTAAACATCAGTGCACATGTATTGA...GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCGCTTCCTTTCTACAATaGGTCCCATCACCCACACCA +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVASFLQ*VPSPTP
Trigger: TGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGC...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAACACTCCTCGCAGCACTaGCCGGTAACTTTGACCAGC +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQHSSQH*PVTLTS
Trigger: GCTGGTCAAAGTTACCGGGCAGTGCTGCGAGGAGTG...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTGCCGCTTCAGTGAGCTaGCTTTTCCAACTGCAATCA +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLAASVS*LFQLQS
Trigger: TGATTGCAGTTGGAAAAGGCAGCTCACTGAAGCGGC...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGGCGGGCAGTTGTAGTTaGATTTGCAGGACTGGATCA +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKAGSCS*ICRTGS
Trigger: TGATCCAGTCCTGCAAATGCAACTACAACTGCCCGC...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp ATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGGCGGGCAGTTGTAGTTaGATTTGCAGGACTGGATCA +
Preference number: 4 (lower is better)
Translates to: IRVSFTRRHSGLSLVTRVAGSCS*ICRTGS
Trigger: TGATCCAGTCCTGCAAATGCAACTACAACTGCCCGC...CACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAATGCATTCCAGCCCCTTaGTGTGGTCGCAGGGCTGCG +
Preference number: 4 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKCIPAP*CGRRAA
Trigger: CGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCA...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp AAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGGGGAGAGATAGTTCTTaGGGACACAGAGGAATGCAG +
Preference number: 4 (lower is better)
Translates to: KVFSNRGCISVHPHQHPWGRDSS*GHRGMQ
Trigger: CTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCC...CCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAATACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp ATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGTTGTCATTGGTAACTCGTGTGGGGAGAGATAGTTCTTaGGGACACAGAGGAATGCAG +
Preference number: 4 (lower is better)
Translates to: IRVSFTRRHSGLSLVTRVGRDSS*GHRGMQ
Trigger: CTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCC...CACACGAGTTACCAATGACAACCCTGAGTGCCGCCTTGTGAAAGAAACCCGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAGGAACCGCAGTACTTaGGCCGGTATTTCTTCACAC +
Preference number: 4 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLRNRST*AGISSH
Trigger: GTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCT...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCGAAACGCTGCTTCATTaGCATGCGGGCAGTTGTAGT +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVETLLH*HAGSCS
Trigger: ACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTC...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTGAAACGCTGCTTCATTaGCATGCGGGCAGTTGTAGT +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLETLLH*HAGSCS
Trigger: ACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTC...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGCCGCACCAGCACCCTTaGCAGTTTCGAAATACCTTA +
Preference number: 4 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKPHQHP*QFRNTL
Trigger: TAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGG...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAATGCTGCAGTCCTCGTTaGGCTGCTTGGCGCAGACCT +
Preference number: 4 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKCCSPR*AAWRRP
Trigger: AGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCA...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR TCA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCCCACAAGCTCCAAAATaGAGCAGTAACATGTGCTCC +
Preference number: 4 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLPQAPK*SSNMCS
Trigger: GGAGCACATGTTACTGCTTCATTTTGGAGCTTGTGG...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCG +
Preference number: 4 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKVWSQG*VLLQSS
Trigger: CGAGGACTGCAGCAAAACGCAGCCCTGCGACCACAC...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCAGCTGGCGCCGAAGTTaGATTCCAGCCCCTTGGTGT +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITSWRRS*IPAPWC
Trigger: ACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCT...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCCTCTGACTGAGCTCTaGAGATCCCCTTCAGAGCGG +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITPLTEL*RSPSER
Trigger: CCGCTCTGAAGGGGATCTGCAGAGCTCAGTCAGAGG...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR GCA 90 bp AGCAGTAACATGTGCTCCAATACTATGAAGCAAAGTATTCTCCAATCGTGGCTGGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAA +
Preference number: 4 (lower is better)
Translates to: SSNMCSNTMKQSILQSWLGDTEE*SPRRHQ
Trigger: TTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCC...CAGCCACGATTGGAGAATACTTTGCTTCATAGTATTGGAGCACATGTTACTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAGGGATTTCTTGGTCTTaGTGCATTTCTTGCCCTTTT +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEGISWS*CISCPF
Trigger: AAAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCC...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTTGCGGGAGCTCATTGTaGCGCGCAGGAGTAGCCCGG +
Preference number: 4 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDICGSSL*RAGVAR
Trigger: CCGGGCTACTCCTGCGCGCCACAATGAGCTCCCGCA...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CCA 90 bp AAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGGTTCGGGGGATTTCTTaGTCTTGCTGCATTTCTTGC +
Preference number: 4 (lower is better)
Translates to: KVFSNRGCISVHPHQHPWVRGIS*SCCISC
Trigger: GCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAAC...CCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAATACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp AAAGTATTCTCCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGTCAATACATGTGCACTaGTGTTTACAGTTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: KVFSNRGCISVHPHQHPWSIHVH*CLQLGW
Trigger: CCAGCCCAACTGTAAACATCAGTGCACATGTATTGA...CCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGGAGAATACTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAGACCATGAAGTTGTTTaGACAATACATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEDHEVV*TIHFWP
Trigger: AGGCCAGAAATGTATTGTTCAAACAACTTCATGGTC...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp GCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTCCAATAAGTCCTGTTTaGATAATTGAGTACGTGAGC +
Preference number: 4 (lower is better)
Translates to: ARLPFYNESHHPHHPRPFPISPV*IIEYVS
Trigger: GCTCACGTACTCAATTATTCAAACAGGACTTATTGG...AAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCAGTCCTCGTTGAGCTaGTTGGCGCAGACCTTACAG +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITQSSLS*LAQTLQ
Trigger: CTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTG...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR GCA 90 bp AGCAGTAACATGTGCTCCAATACTATGAAGCAAAGTATTCTCCAATCGTGGCTGAGCTGGCGCCGAAGTTaGATTCCAGCCCCTTGGTGT +
Preference number: 4 (lower is better)
Translates to: SSNMCSNTMKQSILQSWLSWRRS*IPAPWC
Trigger: ACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCT...CAGCCACGATTGGAGAATACTTTGCTTCATAGTATTGGAGCACATGTTACTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGATTTCTTGGTCTTGCTaGATTTCTTGCCCTTTTTCA +
Preference number: 4 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQISWSC*ISCPFS
Trigger: TGAAAAAGGGCAAGAAATGCAGCAAGACCAAGAAAT...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCCAGGAAGGGATGGAATaGCCTCCCATTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVQEGME*PPIYFC
Trigger: ACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTG...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACATCCAGCCCCTTGGTGTaGTCGCAGGGCTGCGTTTTG +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTSSPLV*SQGCVL
Trigger: CAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGA...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAATGGGACAGCCCAAGTTaGGGAGAGATAGTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQWDSPS*GEIVLG
Trigger: CCCAAGAACTATCTCTCCCCAACTTGGGCTGTCCCA...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAAGGGAGCCGCTTCAGTaGGCTGCCTTTTCCAACTGC +
Preference number: 4 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKREPLQ*AAFSNC
Trigger: GCAGTTGGAAAAGGCAGCTCACTGAAGCGGCTCCCT...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCTGTGCTCCAATACTATaGAGCAAAGTATTCTCCAAT +
Preference number: 4 (lower is better)
Translates to: LLYTGCPQGRTSQIRVSFCAPIL*SKVFSN
Trigger: ATTGGAGAATACTTTGCTTCATAGTATTGGAGCACA...GAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTAAGGGTTGTATAGGATaGGAGGCTCCATTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLKGCIG*EAPFQK
Trigger: TTTTTGGAATGGAGCCTCGCATCCTATACAACCCTT...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAACCCTTCAGGAAGGGATaGAATGCCCTCCCATTTACT +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQPFRKG*NALPFT
Trigger: AGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp AGGGAAACGCTGCTTCATTGGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGACCATGAAGTTGTTTaGACAATACATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: RETLLHWHAGSCSCICRTDHEVV*TIHFWP
Trigger: AGGCCAGAAATGTATTGTTCAAACAACTTCATGGTC...AGTCCTGCAAATGCAACTACAACTGCCCGCATGCCAATGAAGCAGCGTTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTATTTGTGAATGTCATTaGACAGCCTGTAGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: STMSPITHTTPAHFLHDSICECH*TACRRE
Trigger: TTCCCTTCTACAGGCTGTTCAATGACATTCACAAAT...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTCCTGTTTGAATAATTaGGTACGTGAGCTAGGTTGT +
Preference number: 4 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLSCLNN*VRELGC
Trigger: ACAACCTAGCTCACGTACTCAATTATTCAAACAGGA...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp TGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAATCCTGTTTGAATAATTaGGTACGTGAGCTAGGTTGT +
Preference number: 4 (lower is better)
Translates to: CTLAVHKAAPHKSGFLSQSCLNN*VRELGC
Trigger: ACAACCTAGCTCACGTACTCAATTATTCAAACAGGA...TTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTTTGCATTTGCAGGACTaGATCATCATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLLHLQD*IIMTFL
Trigger: CAAGAACGTCATGATGATCCAGTCCTGCAAATGCAA...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCCCTTCAGGAAGGGATaGAATGCCCTCCCATTTACT +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITPFRKG*NALPFT
Trigger: AGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
3UTR CAA 72 bp CTCCATGATTCTGATTCTGACACTCTTCTCCCTTGTTaGTCTAGGTGTGCCCTGGAAACCCAGGTAGCATTT +
Preference number: 4 (lower is better)
Translates to: LHDSDSDTLLPC*SRCALETQVAF
Trigger: AAATGCTACCTGGGTTTCCAGGGCACACCTAGACAAACAAGGGAGAAGAGTGTCAGAATCAGAATCATGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR GCA 90 bp CATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCATTTCTTGGTCTTGCTaGATTTCTTGCCCTTTTTCA +
Preference number: 4 (lower is better)
Translates to: HGVSPFRKGWNALPFTFVISWSC*ISCPFS
Trigger: TGAAAAAGGGCAAGAAATGCAGCAAGACCAAGAAAT...GACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATATGTTTACAGTTGGGCTaGAAACTTTCCCCGTTTTGG +
Preference number: 4 (lower is better)
Translates to: PFRKGWNALPFTFVKGRICLQLG*KLSPFW
Trigger: CCAAAACGGGGAAAGTTTCCAGCCCAACTGTAAACA...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAACTGATGTTTACAGTTaGGCTGGAAACTTTCCCCGT +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQTDVYS*AGNFPR
Trigger: ACGGGGAAAGTTTCCAGCCCAACTGTAAACATCAGT...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAACTGATGTTTACAGTTaGGCTGGAAACTTTCCCCGT +
Preference number: 4 (lower is better)
Translates to: PFRKGWNALPFTFVKGRITDVYS*AGNFPR
Trigger: ACGGGGAAAGTTTCCAGCCCAACTGTAAACATCAGT...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAGCTTCCTTTCTACAATaGGTCCCATCACCCACACCA +
Preference number: 4 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKASFLQ*VPSPTP
Trigger: TGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGC...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTGCTGCCTTTTCCAACTaGAATCAATTCATTGTTTCT +
Preference number: 4 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLAAFSN*NQFIVS
Trigger: AGAAACAATGAATTGATTGCAGTTGGAAAAGGCAGC...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR TCA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATATGTGCTCCAATACTATaGAGCAAAGTATTCTCCAAT +
Preference number: 4 (lower is better)
Translates to: PFRKGWNALPFTFVKGRICAPIL*SKVFSN
Trigger: ATTGGAGAATACTTTGCTTCATAGTATTGGAGCACA...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGCTGCCTTTTCCAACTaGAATCAATTCATTGTTTCT +
Preference number: 4 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQAAFSN*NQFIVS
Trigger: AGAAACAATGAATTGATTGCAGTTGGAAAAGGCAGC...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTC +
Preference number: 4 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITRFGRF*SYIHRV
Trigger: GACCCTGTGAATATAACTCCAGAATCTACCAAAACG...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACATGTTTACAGTTGGGCTaGAAACTTTCCCCGTTTTGG +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTCLQLG*KLSPFW
Trigger: CCAAAACGGGGAAAGTTTCCAGCCCAACTGTAAACA...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp AGCAGTAACATGTGCTCCAATACTATGAAGCAAAGTATTCTCCAATCGTGGCTGTTGCATTTGCAGGACTaGATCATCATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: SSNMCSNTMKQSILQSWLLHLQD*IIMTFL
Trigger: CAAGAACGTCATGATGATCCAGTCCTGCAAATGCAA...CAGCCACGATTGGAGAATACTTTGCTTCATAGTATTGGAGCACATGTTACTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAAAGGACTGGATCATCATaGCGTTCTTGGAAAATGTCT +
Preference number: 4 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKRTGSS*RSWKMS
Trigger: AGACATTTTCCAAGAACGTCATGATGATCCAGTCCT...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAAGGACTGGATCATCATaGCGTTCTTGGAAAATGTCT +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTRTGSS*RSWKMS
Trigger: AGACATTTTCCAAGAACGTCATGATGATCCAGTCCT...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAAAGGGTTGTATAGGATaGGAGGCTCCATTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTKGCIG*EAPFQK
Trigger: TTTTTGGAATGGAGCCTCGCATCCTATACAACCCTT...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR GCA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAGGGATTTCTTGGTCTTaGTGCATTTCTTGCCCTTTT +
Preference number: 4 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTGISWS*CISCPF
Trigger: AAAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCC...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTGTAAGTAAACCTGACTaGTTCGGGGGATTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDIVSKPD*FGGFLG
Trigger: ACCAAGAAATCCCCCGAACCAGTCAGGTTTACTTAC...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CCA 90 bp TTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAACGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTC +
Preference number: 4 (lower is better)
Translates to: FRKGWNALPFTFVKGRIKRFGRF*SYIHRV
Trigger: GACCCTGTGAATATAACTCCAGAATCTACCAAAACG...TTTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTATTTGTGAATGTCATTaGACAGCCTGTAGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDIICECH*TACRRE
Trigger: TTCCCTTCTACAGGCTGTTCAATGACATTCACAAAT...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR TCA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTCCAATAAGTCCTGTTTaGATAATTGAGTACGTGAGC +
Preference number: 4 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDIPISPV*IIEYVS
Trigger: GCTCACGTACTCAATTATTCAAACAGGACTTATTGG...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS GCA 90 bp GCGGCGACGAAGACGCCAACAAGCTGGTGTGCAGCGGACAGGCCGTaGGCAGCGGGGTCGGGGTGGCGGCGCGGTGGGCCCGGTGGGCAG +
Preference number: 5 (lower is better)
Translates to: AATKTPTSWCAADRP*AAGSGWRRGGPGGQ
Trigger: CTGCCCACCGGGCCCACCGCGCCGCCACCCCGACCCCGCTGCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTTCGTCGCCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS TCA 90 bp CGCAGTGAGGGACGGGGGTCTCCGACCCTATCGACGGGGAGCCTCTaGTCTCGTCCAGCCCGGCCACCTCGGAAGGCTGCTCCCACCAAG +
Preference number: 5 (lower is better)
Translates to: RSEGRGSPTLSTGSL*SRPARPPRKAAPTK
Trigger: CTTGGTGGGAGCAGCCTTCCGAGGTGGCCGGGCTGGACGAGATCAGAGGCTCCCCGTCGATAGGGTCGGAGACCCCCGTCCCTCACTGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000480413.1
ENST00000674818.1
CDS TCA 90 bp GCCCCTTGGTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTTaGGCTGCTTGGCGCAGACCTTACAGCAGCCGCAGCCGTCCCGGA +
Preference number: 5 (lower is better)
Translates to: APWCGRRAAFCCSPR*AAWRRPYSSRSRPG
Trigger: TCCGGGACGGCTGCGGCTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS-3UTR CAA 90 bp CATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCGAGCTGGCGCCGAAGTaGCATTCCAGCCCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: HLRSGTASSQSWSAGACSELAPK*HSSPLV
Trigger: CACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTC...GCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS GCA 90 bp CTGGCGCCGAAGTTGCATTCCAGCCCCTTGGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCGTTGAGCTGCTTGGCGCAGACCTTA +
Preference number: 5 (lower is better)
Translates to: LAPKLHSSPLVWSQG*VLLQSSLSCLAQTL
Trigger: TAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS-3UTR CAA 90 bp CAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCTTCACATTGACCAGCCGAGGGTaGGGACAGCCCAAGTTGGGG +
Preference number: 5 (lower is better)
Translates to: QHRPSTQEPQYLGRYFFTLTSRG*GQPKLG
Trigger: CCCCAACTTGGGCTGTCCCAACCCTCGGCTGGTCAA...TGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS TCA 90 bp GCAAAAGGAGAGTCCAACTCACCAGCCTGGTCAAGTGGAGAAGGGTaGCGACTAAGGCGAGCGCCCTGGCGATGCGGGAGCTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: AKGESNSPAWSSGEG*RLRRAPWRCGSSLW
Trigger: CCACAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCGTCACCCTTCTCCACTTGACCAGGCTGGTGAGTTGGACTCTCCTTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674818.1
CDS-3UTR CAA 90 bp CAGCATCGGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCTTCACATTGCTGCAGTCCTCGTaGAGCTGCTTGGCGCAGACC +
Preference number: 5 (lower is better)
Translates to: QHRPSTQEPQYLGRYFFTLLQSS*SCLAQT
Trigger: GGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAA...TGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCCGATGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCCGATGCGGGAGCTCATaGTGGCGCGCAGGAGTAGCC +
Preference number: 5 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLRCGSS*WRAGVA
Trigger: GGCTACTCCTGCGCGCCACAATGAGCTCCCGCATCG...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CAA 90 bp CTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCCACTGCCCGGTAACTTaGACCAGCCGAGGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: LLYTGCPQGRTSQIRVSFHCPVT*TSRGLG
Trigger: TCCCAACCCTCGGCTGGTCAAAGTTACCGGGCAGTG...GAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp GCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCCTCGTTGAGCTGCTaGGCGCAGACCTTACAGCAG +
Preference number: 5 (lower is better)
Translates to: ARLPFYNESHHPHHPRPFSSLSC*AQTLQQ
Trigger: CTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGA...AAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CAA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGTTGCATTCCAGCCCCTaGGTGTGGTCGCAGGGCTGC +
Preference number: 5 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKLHSSP*VWSQGC
Trigger: GCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAA...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GGCATGCGGGCAGTTGTAGTTGCATTTGCAGGACTGGATCATCATGACGTTCTTTTGCATTCCAGCCCCTaGGTGTGGTCGCAGGGCTGC +
Preference number: 5 (lower is better)
Translates to: GMRAVVVAFAGLDHHDVLLHSSP*VWSQGC
Trigger: GCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAA...AAGAACGTCATGATGATCCAGTCCTGCAAATGCAACTACAACTGCCCGCATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTCACTGCCCGGTAACTTaGACCAGCCGAGGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: STMSPITHTTPAHFLHDSHCPVT*TSRGLG
Trigger: TCCCAACCCTCGGCTGGTCAAAGTTACCGGGCAGTG...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGTGGCCTTGTAAAGGGTaGTATAGGATGCGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQWPCKG*YRMRGS
Trigger: GGAGCCTCGCATCCTATACAACCCTTTACAAGGCCA...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp TCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATGGGGATTTCTTGGTCTaGCTGCATTTCTTGCCCTTT +
Preference number: 5 (lower is better)
Translates to: SSQRNRIFTVLVSWGVQHGDFLV*LHFLPF
Trigger: AAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCC...ATGCTGCACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp GGCCGTCCACGCAGGAACCGCAGTACTTGGGCCGGTATTTCTTCACACTCAAACTCCGCACCAGCACCCTaGGCAGTTTCGAAATACCTT +
Preference number: 5 (lower is better)
Translates to: GRPRRNRSTWAGISSHSNSAPAP*AVSKYL
Trigger: AAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGA...GTTTGAGTGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTGCGTGGACGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTACTCCCGGCGCGCACTaGGGCGCCTCCAGGGGGCAG +
Preference number: 5 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDITPGAH*GASRGQ
Trigger: CTGCCCCCTGGAGGCGCCCAAGTGCGCGCCGGGAGT...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CAA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAATTGGGACAGCCCAAGTaGGGGAGAGATAGTTCTTGG +
Preference number: 5 (lower is better)
Translates to: PIVAALVSIRTSTLGSFELGQPK*GRDSSW
Trigger: CCAAGAACTATCTCTCCCCAACTTGGGCTGTCCCAA...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTCAGTTCCACAGGTCTTaGAGCACTGGGACCATGAAG +
Preference number: 5 (lower is better)
Translates to: ARLPFYNESHHPHHPRPFQFHRS*STGTMK
Trigger: CTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTG...AAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCTTTTTCAGGCTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCCAGTTCCACAGGTCTTaGAGCACTGGGACCATGAAG +
Preference number: 5 (lower is better)
Translates to: PFSGCCTLAVHKAAPHKSQFHRS*STGTMK
Trigger: CTTCATGGTCCCAGTGCTCAAAGACCTGTGGAACTG...GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS TCA 90 bp ATGTTCACATCCCACCCACCTGCCAGGCAACAGTCTACACGTCCCTaGAGGAACTTACTTTCAGGCTGCTGTACACTGGCTGTCCACAAG +
Preference number: 5 (lower is better)
Translates to: MFTSHPPARQQSTRP*RNLLSGCCTLAVHK
Trigger: CTTGTGGACAGCCAGTGTACAGCAGCCTGAAAGTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000676007.1
CDS-3UTR CAA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAGAGCTGGCGCCGAAGTaGCATTCCAGCCCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: PFRKGWNALPFTFVKGRIELAPK*HSSPLV
Trigger: CACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTC...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAGTCTTGCTGCATTTCTaGCCCTTTTTCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PIVAALVSIRTSTLGSFEVLLHF*PFFRLL
Trigger: CAGCAGCCTGAAAAAGGGCAAGAAATGCAGCAAGAC...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCTTTTTCAGGCTGCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGTCTTGCTGCATTTCTaGCCCTTTTTCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PFSGCCTLAVHKAAPHKSVLLHF*PFFRLL
Trigger: CAGCAGCCTGAAAAAGGGCAAGAAATGCAGCAAGAC...GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS GCA 90 bp GACAGCCCAAGTTGGGGAGAGATAGTTCTTGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAATACATGTGCACTGATGTTTACAGT +
Preference number: 5 (lower is better)
Translates to: DSPSWGEIVLGDTEE*SPRRHQYMCTDVYS
Trigger: ACTGTAAACATCAGTGCACATGTATTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCCCAACTTGGGCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS-3UTR CAA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAATTGCTGCAGTCCTCGTaGAGCTGCTTGGCGCAGACC +
Preference number: 5 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQLLQSS*SCLAQT
Trigger: GGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAA...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp AGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCTTGGGACAGCCCAAGTaGGGGAGAGATAGTTCTTGG +
Preference number: 5 (lower is better)
Translates to: SVHPHQHPWQFRNTLMLLLGQPK*GRDSSW
Trigger: CCAAGAACTATCTCTCCCCAACTTGGGCTGTCCCAA...GAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCTTGACCAGCCGAGGGTaGGGACAGCCCAAGTTGGGG +
Preference number: 5 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITLTSRG*GQPKLG
Trigger: CCCCAACTTGGGCTGTCCCAACCCTCGGCTGGTCAA...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGTCCTCCATGGGGTCCTaGATACTATCCTCGTCACAG +
Preference number: 5 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKSSMGS*ILSSSQ
Trigger: CTGTGACGAGGATAGTATCAAGGACCCCATGGAGGA...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GGAAAATGTCTCCCCATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGCACTCAGGGTTGTCATaGGTAACTCGTGTGGAGATA +
Preference number: 5 (lower is better)
Translates to: GKCLPIFAAEPHLHSPGQHSGLS*VTRVEI
Trigger: TATCTCCACACGAGTTACCAATGACAACCCTGAGTG...CTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACATTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp GCAAGGCTTCCTTTCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTGGGGATTTCTTGGTCTaGCTGCATTTCTTGCCCTTT +
Preference number: 5 (lower is better)
Translates to: ARLPFYNESHHPHHPRPFGDFLV*LHFLPF
Trigger: AAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCC...AAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGAAAGGAAGCCTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTACTCTTCTCCCTTGTTaGTCTAGGTGTGCCCTGGAA +
Preference number: 5 (lower is better)
Translates to: STMSPITHTTPAHFLHDSTLLPC*SRCALE
Trigger: TTCCAGGGCACACCTAGACAAACAAGGGAGAAGAGT...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCAATCGTGGCTGCATTAGTGTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAACTGCAATCAATTCATaGTTTCTCGTCAACTCCACC +
Preference number: 5 (lower is better)
Translates to: PIVAALVSIRTSTLGSFETAINS*FLVNST
Trigger: GGTGGAGTTGACGAGAAACAATGAATTGATTGCAGT...TTCGAAACTGCCAAGGGTGCTGGTGCGGATGGACACTAATGCAGCCACGATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGGGACTGGGACCATGAAGTaGTTTGAACAATACATTTCT +
Preference number: 5 (lower is better)
Translates to: PQGRTSQIRVSFTRRHSGTGTMK*FEQYIS
Trigger: AGAAATGTATTGTTCAAACAACTTCATGGTCCCAGT...CCCTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGCACTCAGGGTTGTCATaGGTAACTCGTGTGGAGATA +
Preference number: 5 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKHSGLS*VTRVEI
Trigger: TATCTCCACACGAGTTACCAATGACAACCCTGAGTG...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTTTCACAAGGCGGCACTCAGACACCTGATTTCTGTTaGCAGTTTAGAGTGCAGATA +
Preference number: 5 (lower is better)
Translates to: VHKAAPHKSGFLSQGGTQTPDFC*QFRVQI
Trigger: TATCTGCACTCTAAACTGCAAACAGAAATCAGGTGT...CTGAGTGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCCTTGTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS TCA 90 bp GCGCTTTCGTTGGGCCCAGACACACTGAATTGCATTCCAGACTGCTaGAATCATGTGCCTTTCTGCCAAGCTACCAACAACAAAGCATCA +
Preference number: 5 (lower is better)
Translates to: ALSLGPDTLNCIPDC*NHVPFCQATNNKAS
Trigger: TGATGCTTTGTTGTTGGTAGCTTGGCAGAAAGGCACATGATTTCAGCAGTCTGGAATGCAATTCAGTGTGTCTGGGCCCAACGAAAGCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS TCA 90 bp CAGGAATCACTTTTCCGTATGCGCTTTCGTTGGGCCCAGACACACTaGATTGCATTCCAGACTGCTGAAATCATGTGCCTTTCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: QESLFRMRFRWAQTH*IAFQTAEIMCLSAK
Trigger: CTTGGCAGAAAGGCACATGATTTCAGCAGTCTGGAATGCAATTCAGTGTGTCTGGGCCCAACGAAAGCGCATACGGAAAAGTGATTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS-3UTR CAA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACATCGCAGGGCTGCGTTTaGCTGCAGTCCTCGTTGAGC +
Preference number: 5 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTSQGCV*LQSSLS
Trigger: GCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGA...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GGAAAATGTCTCCCCATCTTCGCAGCGGAACCGCATCTTCACAGTCCTGGTCAGGAAACTTTCCCCGTTTaGGTAGATTCTGGAGTTATA +
Preference number: 5 (lower is better)
Translates to: GKCLPIFAAEPHLHSPGQETFPV*VDSGVI
Trigger: TATAACTCCAGAATCTACCAAAACGGGGAAAGTTTC...CTGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACATTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS-3UTR CAA 90 bp CACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAATCCTCCATGGGGTCCTaGATACTATCCTCGTCACAG +
Preference number: 5 (lower is better)
Translates to: HQHPWQFRNTLMLLKNEQSSMGS*ILSSSQ
Trigger: CTGTGACGAGGATAGTATCAAGGACCCCATGGAGGA...TTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATACAGGAACCGCAGTACTaGGGCCGGTATTTCTTCACA +
Preference number: 5 (lower is better)
Translates to: PFRKGWNALPFTFVKGRIQEPQY*GRYFFT
Trigger: TGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTG...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCTAATGACTTTGGAGCACCTCTAAAAATACCGAATGGCATACACTCAGATATTTCGCAGGGCTGCGTTTaGCTGCAGTCCTCGTTGAGC +
Preference number: 5 (lower is better)
Translates to: PNDFGAPLKIPNGIHSDISQGCV*LQSSLS
Trigger: GCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGA...AATATCTGAGTGTATGCCATTCGGTATTTTTAGAGGTGCTCCAAAGTCATTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp ACACTCATGGAGTGTCCCCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTACTGCAATCAATTCATaGTTTCTCGTCAACTCCACC +
Preference number: 5 (lower is better)
Translates to: TLMECPPSGRDGMPSHLLTAINS*FLVNST
Trigger: GGTGGAGTTGACGAGAAACAATGAATTGATTGCAGT...AAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGGGGACACTCCATGAGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCTGGCCTTGTAAAGGGTaGTATAGGATGCGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITWPCKG*YRMRGS
Trigger: GGAGCCTCGCATCCTATACAACCCTTTACAAGGCCA...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS GCA 90 bp ACTCCAGACCAGAACAATAAGTTAGTCAGGAATCACTTTTCCGTATaGGCTTTCGTTGGGCCCAGACACACTGAATTGCATTCCAGACTG +
Preference number: 5 (lower is better)
Translates to: TPDQNNKLVRNHFSV*AFVGPRHTELHSRL
Trigger: CAGTCTGGAATGCAATTCAGTGTGTCTGGGCCCAACGAAAGCGCATACGGAAAAGTGATTCCTGACTAACTTATTGTTCTGGTCTGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS-3UTR CAA 90 bp TCTACAATGAGTCCCATCACCCACACCACCCCCGCCCATTTTCTCCATGATTCTACACCTGATTTCTGTTaGCAGTTTAGAGTGCAGATA +
Preference number: 5 (lower is better)
Translates to: STMSPITHTTPAHFLHDSTPDFC*QFRVQI
Trigger: TATCTGCACTCTAAACTGCAAACAGAAATCAGGTGT...AGAATCATGGAGAAAATGGGCGGGGGTGGTGTGGGTGATGGGACTCATTGTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACACAGGAACCGCAGTACTaGGGCCGGTATTTCTTCACA +
Preference number: 5 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTQEPQY*GRYFFT
Trigger: TGTGAAGAAATACCGGCCCAAGTACTGCGGTTCCTG...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACATCCGCACCAGCACCCTaGGCAGTTTCGAAATACCTT +
Preference number: 5 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTSAPAP*AVSKYL
Trigger: AAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGA...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp GTCCATCCGCACCAGCACCCTTGGCAGTTTCGAAATACCTTAATGCTCCTCAAGGCTTCAGAATCTTTATaGTGCTTCATACAATGTCGT +
Preference number: 5 (lower is better)
Translates to: VHPHQHPWQFRNTLMLLKASESL*CFIQCR
Trigger: ACGACATTGTATGAAGCACAATAAAGATTCTGAAGC...CTTGAGGAGCATTAAGGTATTTCGAAACTGCCAAGGGTGCTGGTGCGGATGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS-3UTR CAA 90 bp CAGTTTCGAAATACCTTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAACTCTTCTCCCTTGTTaGTCTAGGTGTGCCCTGGAA +
Preference number: 5 (lower is better)
Translates to: QFRNTLMLLKNEQGFLSTTLLPC*SRCALE
Trigger: TTCCAGGGCACACCTAGACAAACAAGGGAGAAGAGT...TGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAAGGTATTTCGAAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CCCTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAGAAACTTTCCCCGTTTaGGTAGATTCTGGAGTTATA +
Preference number: 5 (lower is better)
Translates to: PFRKGWNALPFTFVKGRIETFPV*VDSGVI
Trigger: TATAACTCCAGAATCTACCAAAACGGGGAAAGTTTC...TATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp TTAATGCTCCTCAAGAATGAGCAAGGCTTCCTTTCTACAATGAGTCCCATCACCATCATCATGACGTTCTaGGAAAATGTCTCCCCATCT +
Preference number: 5 (lower is better)
Translates to: LMLLKNEQGFLSTMSPITIIMTF*ENVSPS
Trigger: AGATGGGGAGACATTTTCCAAGAACGTCATGATGAT...GGTGATGGGACTCATTGTAGAAAGGAAGCCTTGCTCATTCTTGAGGAGCATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAATCATCATGACGTTCTaGGAAAATGTCTCCCCATCT +
Preference number: 5 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKIIMTF*ENVSPS
Trigger: AGATGGGGAGACATTTTCCAAGAACGTCATGATGAT...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS-3UTR CAA 90 bp CTTCAGGAAGGGATGGAATGCCCTCCCATTTACTTTTGTCAAAGGACGAATAAAACTGGGACCATGAAGTaGTTTGAACAATACATTTCT +
Preference number: 5 (lower is better)
Translates to: LQEGMECPPIYFCQRTNKTGTMK*FEQYIS
Trigger: AGAAATGTATTGTTCAAACAACTTCATGGTCCCAGT...TTTATTCGTCCTTTGACAAAAGTAAATGGGAGGGCATTCCATCCCTTCCTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000451137.7
ENST00000675083.1
CDS GCA 72 bp AAGACGCCAACAAGCTGGTGTGCAGCGGACAGGCCGTaGGCAGCGGGGTCGGGGTGGCGGCGCGGTGGGCCC +
Preference number: 6 (lower is better)
Translates to: KTPTSWCAADRP*AAGSGWRRGGP
Trigger: GGGCCCACCGCGCCGCCACCCCGACCCCGCTGCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS CCA 72 bp CCCGGGGCGAGCGCGGCGACGAAGACGCCAACAAGCTaGTGTGCAGCGGACAGGCCGTGCGCAGCGGGGTCG +
Preference number: 6 (lower is better)
Translates to: PGASAATKTPTS*CAADRPCAAGS
Trigger: CGACCCCGCTGCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTTCGTCGCCGCGCTCGCCCCGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS GCA 72 bp GGCGAGCGCGGCGACGAAGACGCCAACAAGCTGGTGTaGAGCGGACAGGCCGTGCGCAGCGGGGTCGGGGTG +
Preference number: 6 (lower is better)
Translates to: GERGDEDANKLV*SGQAVRSGVGV
Trigger: CACCCCGACCCCGCTGCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTTCGTCGCCGCGCTCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000451137.7
CDS CCA 72 bp CTAAGGCGAGCGCCCTGGCGATGCGGGAGCTCATTGTaGCGCGCAGGAGTAGCCCGGGGCGAGCGCGGCGAC +
Preference number: 6 (lower is better)
Translates to: LRRAPWRCGSSL*RAGVARGERGD
Trigger: GTCGCCGCGCTCGCCCCGGGCTACTCCTGCGCGCCACAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS CAA 72 bp CGACTAAGGCGAGCGCCCTGGCGATGCGGGAGCTCATaGTGGCGCGCAGGAGTAGCCCGGGGCGAGCGCGGC +
Preference number: 6 (lower is better)
Translates to: RLRRAPWRCGSS*WRAGVARGERG
Trigger: GCCGCGCTCGCCCCGGGCTACTCCTGCGCGCCACAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS TCA 72 bp AGGTGGAGAGCGCCTGGAAGGGGGAGAAGATACGCGTaGGACTCGGCGCGGTGCGCAGGAGGGGCGCCGCGG +
Preference number: 6 (lower is better)
Translates to: RWRAPGRGRRYA*DSARCAGGAPR
Trigger: CCGCGGCGCCCCTCCTGCGCACCGCGCCGAGTCTCACGCGTATCTTCTCCCCCTTCCAGGCGCTCTCCACCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000480413.1
ENST00000674818.1
CDS TCA 72 bp GGACGGGGGTCTCCGACCCTATCGACGGGGAGCCTCTaGTCTCGTCCAGCCCGGCCACCTCGGAAGGCTGCT +
Preference number: 6 (lower is better)
Translates to: GRGSPTLSTGSL*SRPARPPRKAA
Trigger: AGCAGCCTTCCGAGGTGGCCGGGCTGGACGAGATCAGAGGCTCCCCGTCGATAGGGTCGGAGACCCCCGTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000480413.1
ENST00000674818.1
CDS GCA 72 bp CCTCTGATCTCGTCCAGCCCGGCCACCTCGGAAGGCTaGTCCCACCAAGAGGTCCCGACACGTCTTCGGGGG +
Preference number: 6 (lower is better)
Translates to: PLISSSPATSEG*SHQEVPTRLRG
Trigger: CCCCCGAAGACGTGTCGGGACCTCTTGGTGGGAGCAGCCTTCCGAGGTGGCCGGGCTGGACGAGATCAGAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000674818.1
CDS TCA 72 bp AGGTGGAGAGCGCCAGCCTGGTCAAGTGGAGAAGGGTaGCGACTAAGGCGAGCGCCCTGGCGATGCGGGAGC +
Preference number: 6 (lower is better)
Translates to: RWRAPAWSSGEG*RLRRAPWRCGS
Trigger: GCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCGTCACCCTTCTCCACTTGACCAGGCTGGCGCTCTCCACCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000676007.1
CDS CAA 90 bp AGCCCCTTGGTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTaGAGCTGCTTGGCGCAGACCTTACAGCAGCCGCAGCCGTCCCGG +
Preference number: 6 (lower is better)
Translates to: SPLVWSQGCVLLQSS*SCLAQTLQQPQPSR
Trigger: CCGGGACGGCTGCGGCTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS GCA 72 bp AGATCCCCTTCAGAGCGGTGGAGCTGGCGCCGAAGTTaGATTCCAGCCCCTTGGTGTGGTCGCAGGGCTGCG +
Preference number: 6 (lower is better)
Translates to: RSPSERWSWRRS*IPAPWCGRRAA
Trigger: CGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTCCACCGCTCTGAAGGGGATCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CAA 72 bp CAGGGCTGCGTTTTGCTGCAGTCCTCGTTGAGCTGCTaGGCGCAGACCTTACAGCAGCCGCAGCCGTCCCGG +
Preference number: 6 (lower is better)
Translates to: QGCVLLQSSLSC*AQTLQQPQPSR
Trigger: CCGGGACGGCTGCGGCTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS CAA 72 bp GCGGTGGAGCTGGCGCCGAAGTTGCATTCCAGCCCCTaGGTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCC +
Preference number: 6 (lower is better)
Translates to: AVELAPKLHSSP*VWSQGCVLLQS
Trigger: GGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTCCACCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS TCA 72 bp GAGTCCAACTCACCAGCCTGGTCAAGTGGAGAAGGGTaGCGACTAAGGCGAGCGCCCTGGCGATGCGGGAGC +
Preference number: 6 (lower is better)
Translates to: ESNSPAWSSGEG*RLRRAPWRCGS
Trigger: GCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCGTCACCCTTCTCCACTTGACCAGGCTGGTGAGTTGGACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000674818.1
CDS CCA 72 bp CGGTGGAGCTGGCGCCGAAGTTGCATTCCAGCCCCTTaGTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCT +
Preference number: 6 (lower is better)
Translates to: RWSWRRSCIPAP*CGRRAAFCCSP
Trigger: AGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTCCACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CAA 90 bp CCCTTCAGAGCGGTGGAGCTGGCGCCGAAGTTGCATTCCAGCCCCTaGGTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTTGAGC +
Preference number: 6 (lower is better)
Translates to: PFRAVELAPKLHSSP*VWSQGCVLLQSSLS
Trigger: GCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTCCACCGCTCTGAAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS TCA 72 bp TGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTTaGGCTGCTTGGCGCAGACCTTACAGCAGCCGCAGC +
Preference number: 6 (lower is better)
Translates to: CGRRAAFCCSPR*AAWRRPYSSRS
Trigger: GCTGCGGCTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS GCA 72 bp TCAACTCCACCTCGGAGGCATCGAATCCCAGCTCCTTaGCAAGGAGGCCGTCCTGGTCCTCCATGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: STPPRRHRIPAP*QGGRPGPPWGP
Trigger: AGGACCCCATGGAGGACCAGGACGGCCTCCTTGGCAAGGAGCTGGGATTCGATGCCTCCGAGGTGGAGTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CCA 72 bp GAGCTGGCGCCGAAGTTGCATTCCAGCCCCTTGGTGTaGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTTG +
Preference number: 6 (lower is better)
Translates to: ELAPKLHSSPLV*SQGCVLLQSSL
Trigger: CAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CAA 72 bp GTGTGGTCGCAGGGCTGCGTTTTGCTGCAGTCCTCGTaGAGCTGCTTGGCGCAGACCTTACAGCAGCCGCAG +
Preference number: 6 (lower is better)
Translates to: VWSQGCVLLQSS*SCLAQTLQQPQ
Trigger: CTGCGGCTGCTGTAAGGTCTGCGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS GCA 72 bp AAGTTGCATTCCAGCCCCTTGGTGTGGTCGCAGGGCTaGGTTTTGCTGCAGTCCTCGTTGAGCTGCTTGGCG +
Preference number: 6 (lower is better)
Translates to: KLHSSPLVWSQG*VLLQSSLSCLA
Trigger: CGCCAAGCAGCTCAACGAGGACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCTGGAATGCAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CCA 72 bp TCTTACCTCTGCAGATCCCCTTCAGAGCGGTGGAGCTaGCGCCGAAGTTGCATTCCAGCCCCTTGGTGTGGT +
Preference number: 6 (lower is better)
Translates to: SYLCRSPSERWS*RRSCIPAPWCG
Trigger: ACCACACCAAGGGGCTGGAATGCAACTTCGGCGCCAGCTCCACCGCTCTGAAGGGGATCTGCAGAGGTAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS CAA 72 bp TTGCCAAGGAGGCCGTCCTGGTCCTCCATGGGGTCCTaGATACTATCCTCGTCACAGACCCACTCCTCGCAG +
Preference number: 6 (lower is better)
Translates to: LPRRPSWSSMGS*ILSSSQTHSSQ
Trigger: CTGCGAGGAGTGGGTCTGTGACGAGGATAGTATCAAGGACCCCATGGAGGACCAGGACGGCCTCCTTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CAA 90 bp CACTGCCCGGTAACTTTGACCAGCCGAGGGTTGGGACAGCCCAAGTaGGGGAGAGATAGTTCTTGGGGACACAGAGGAATGCAGCCCACG +
Preference number: 6 (lower is better)
Translates to: HCPVTLTSRGLGQPK*GRDSSWGHRGMQPT
Trigger: CGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCCCAACTTGGGCTGTCCCAACCCTCGGCTGGTCAAAGTTACCGGGCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CCA 72 bp GCATCGAATCCCAGCTCCTTGCCAAGGAGGCCGTCCTaGTCCTCCATGGGGTCCTTGATACTATCCTCGTCA +
Preference number: 6 (lower is better)
Translates to: ASNPSSLPRRPS*SSMGSLILSSS
Trigger: TGACGAGGATAGTATCAAGGACCCCATGGAGGACCAGGACGGCCTCCTTGGCAAGGAGCTGGGATTCGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CAA 90 bp TTGTTTCTCGTCAACTCCACCTCGGAGGCATCGAATCCCAGCTCCTaGCCAAGGAGGCCGTCCTGGTCCTCCATGGGGTCCTTGATACTA +
Preference number: 6 (lower is better)
Translates to: LFLVNSTSEASNPSS*PRRPSWSSMGSLIL
Trigger: TAGTATCAAGGACCCCATGGAGGACCAGGACGGCCTCCTTGGCAAGGAGCTGGGATTCGATGCCTCCGAGGTGGAGTTGACGAGAAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS TCA 72 bp TCCCACCCACCTGCCAGGCAACAGTCTACACGTCCCTaGAGGAACTTACTTTCAGGCTGCTGTACACTGGCT +
Preference number: 6 (lower is better)
Translates to: SHPPARQQSTRP*RNLLSGCCTLA
Trigger: AGCCAGTGTACAGCAGCCTGAAAGTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000676007.1
CDS CCA 72 bp GTCCCTGAAGGAACTTACTTTCAGGCTGCTGTACACTaGCTGTCCACAAGGCCGCACCTCACAAATCCGGGT +
Preference number: 6 (lower is better)
Translates to: VPEGTYFQAAVH*LSTRPHLTNPG
Trigger: ACCCGGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAGTAAGTTCCTTCAGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000676007.1
CDS CAA 72 bp GTAACTTTGACCAGCCGAGGGTTGGGACAGCCCAAGTaGGGGAGAGATAGTTCTTGGGGACACAGAGGAATG +
Preference number: 6 (lower is better)
Translates to: VTLTSRGLGQPK*GRDSSWGHRGM
Trigger: CATTCCTCTGTGTCCCCAAGAACTATCTCTCCCCAACTTGGGCTGTCCCAACCCTCGGCTGGTCAAAGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS GCA 72 bp AGTTGGGGAGAGATAGTTCTTGGGGACACAGAGGAATaGAGCCCACGGCGCCATCAATACATGTGCACTGAT +
Preference number: 6 (lower is better)
Translates to: SWGEIVLGDTEE*SPRRHQYMCTD
Trigger: ATCAGTGCACATGTATTGATGGCGCCGTGGGCTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCCCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS GCA 72 bp CGTTTTGGTAGATTCTGGAGTTATATTCACAGGGTCTaGCCTCTGACTGAGCTCTGCAGATCCCCTTCAGAG +
Preference number: 6 (lower is better)
Translates to: RFGRFWSYIHRV*PLTELCRSPSE
Trigger: CTCTGAAGGGGATCTGCAGAGCTCAGTCAGAGGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674818.1
ENST00000676007.1
CDS TCA 72 bp TTGGGCCCAGACACACTGAATTGCATTCCAGACTGCTaGAATCATGTGCCTTTCTGCCAAGCTACCAACAAC +
Preference number: 6 (lower is better)
Translates to: LGPDTLNCIPDC*NHVPFCQATNN
Trigger: GTTGTTGGTAGCTTGGCAGAAAGGCACATGATTTCAGCAGTCTGGAATGCAATTCAGTGTGTCTGGGCCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS TCA 72 bp CTTTTCCGTATGCGCTTTCGTTGGGCCCAGACACACTaGATTGCATTCCAGACTGCTGAAATCATGTGCCTT +
Preference number: 6 (lower is better)
Translates to: LFRMRFRWAQTH*IAFQTAEIMCL
Trigger: AAGGCACATGATTTCAGCAGTCTGGAATGCAATTCAGTGTGTCTGGGCCCAACGAAAGCGCATACGGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS CCA 72 bp AGTTGGGCTGGAAACTTTCCCCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTCTGCCCTCTGACTGAG +
Preference number: 6 (lower is better)
Translates to: SWAGNFPRFGRF*SYIHRVCPLTE
Trigger: CTCAGTCAGAGGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGTTTCCAGCCCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000676007.1
CDS CCA 72 bp CGGCGCCATCAATACATGTGCACTGATGTTTACAGTTaGGCTGGAAACTTTCCCCGTTTTGGTAGATTCTGG +
Preference number: 6 (lower is better)
Translates to: RRHQYMCTDVYS*AGNFPRFGRFW
Trigger: CCAGAATCTACCAAAACGGGGAAAGTTTCCAGCCCAACTGTAAACATCAGTGCACATGTATTGATGGCGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS CCA 72 bp AGTTGGGCTGGAAACTTTCCCCGTTTTGGTAGATTCTaGAGTTATATTCACAGGGTCTGCCCTCTGACTCTG +
Preference number: 6 (lower is better)
Translates to: SWAGNFPRFGRF*SYIHRVCPLTL
Trigger: CAGAGTCAGAGGGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGTTTCCAGCCCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000675083.1
CDS CAA 72 bp CTGATGTTTACAGTTGGGCTGGAAACTTTCCCCGTTTaGGTAGATTCTGGAGTTATATTCACAGGGTCTGCC +
Preference number: 6 (lower is better)
Translates to: LMFTVGLETFPV*VDSGVIFTGSA
Trigger: GGCAGACCCTGTGAATATAACTCCAGAATCTACCAAAACGGGGAAAGTTTCCAGCCCAACTGTAAACATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000451137.7
ENST00000480413.1
ENST00000674743.1
ENST00000674818.1
ENST00000675083.1
ENST00000676007.1
CDS TCA 72 bp GTAGATTCTGGAGTTATATTCACAGGGTCTGCCCTCTaGCTGAGCTGCAAAGATCACCAAAAGAGAAAGGTA +
Preference number: 6 (lower is better)
Translates to: VDSGVIFTGSAL*LSCKDHQKRKV
Trigger: TACCTTTCTCTTTTGGTGATCTTTGCAGCTCAGTCAGAGGGCAGACCCTGTGAATATAACTCCAGAATCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS GCA 72 bp CAGAACAATAAGTTAGTCAGGAATCACTTTTCCGTATaGGCTTTCGTTGGGCCCAGACACACTGAATTGCAT +
Preference number: 6 (lower is better)
Translates to: QNNKLVRNHFSV*AFVGPRHTELH
Trigger: ATGCAATTCAGTGTGTCTGGGCCCAACGAAAGCGCATACGGAAAAGTGATTCCTGACTAACTTATTGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674743.1
CDS CAA 90 bp GGCCCTCACGCTATTGGAAAAGTAGTTGAAATTCCTTGCATTCCTTaGCATTTAACAGCATGTTTACCTAATCACCGGCTTATTAGGATT +
Preference number: 6 (lower is better)
Translates to: GPHAIGKVVEIPCIP*HLTACLPNHRLIRI
Trigger: AATCCTAATAAGCCGGTGATTAGGTAAACATGCTGTTAAATGCAAAGGAATGCAAGGAATTTCAACTACTTTTCCAATAGCGTGAGGGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674818.1
CDS CCA 72 bp ACCTATGATTTGGGTCCCTTTCTTTTAGGAATGCTCTaGACCTTTGACCTTCTGAATAGCCAACTCTATATA +
Preference number: 6 (lower is better)
Translates to: TYDLGPFLLGML*TFDLLNSQLYI
Trigger: TATATAGAGTTGGCTATTCAGAAGGTCAAAGGTCCAGAGCATTCCTAAAAGAAAGGGACCCAAATCATAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000674818.1