RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCM2L (Homo sapiens)

Ensembl gene IDs: ENSG00000101331

Ensembl transcript IDs: ENST00000262659.12, ENST00000452892.3

Found 226 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCGATGTCGTGCGTGATGTCAGCCAGCAGCCGGTGGAAGGCCTGTaGCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGA +
Preference number: 1 (lower is better)
Translates to: LDVVRDVSQQPVEGL*LGPLRRAIVAAHCG
Trigger: TCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCACAGGCCTTCCACCGGCTGCTGGCTGACATCACGCACGACATCGAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR CCA 90 bp GAGACTCAGAGGTGGGCTGCTGAGCCACGCCGTCCGCAGGGGCGGTaGCTACAGGTAGTTGTCTTCTGCGGCGTCGCTCCCGCCCCTGGA +
Preference number: 1 (lower is better)
Translates to: ETQRWAAEPRRPQGR*LQVVVFCGVAPAPG
Trigger: TCCAGGGGCGGGAGCGACGCCGCAGAAGACAACTACCTGTAGCCACCGCCCCTGCGGACGGCGTGGCTCAGCAGCCCACCTCTGAGTCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR TCA 90 bp TCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGGCTaGTCCCTCTGGACTTCTGGGACAAAGCAGGATCGCTGCTCAGCC +
Preference number: 1 (lower is better)
Translates to: SRKLRRPGEEGVFWG*SLWTSGTKQDRCSA
Trigger: GGCTGAGCAGCGATCCTGCTTTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTTGCCGCCCTCGCGGATaGCCACGCCCTCCAGGAAGC +
Preference number: 2 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRCRPRG*PRPPGS
Trigger: GCTTCCTGGAGGGCGTGGGCATCCGCGAGGGCGGCA...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR TCA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTGGCCGAAGCTGTCAGTaGGGATGCCGCCCTCGCGGA +
Preference number: 2 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRGRSCQ*GCRPRG
Trigger: TCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCC...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR TCA 90 bp CGGCAGAGCGGCCCAGGAGCCCCGGGTGACTGCCCCGGACTTCAGGGCCCGGCTAGCTCATGCTGCGCTTaGTGCGGCCGAAGCTGTCAG +
Preference number: 2 (lower is better)
Translates to: RQSGPGAPGDCPGLQGPASSCCA*CGRSCQ
Trigger: CTGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCT...AGCCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR GCA 90 bp GTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACCAGCCTCCAGAAAGCTaGGGCGTCCCGGGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: VATLLGGWGLSSLDRWGNQPPES*GVPGRR
Trigger: CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTG...GTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp GCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGACAAAGCAGGATCGCTaGTCAGCCCCAGCCCGGCAG +
Preference number: 2 (lower is better)
Translates to: ATLLGGWGLSSLDRWGNGTKQDR*SAPARQ
Trigger: CTGCCGGGCTGGGGCTGAGCAGCGATCCTGCTTTGT...CCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR TCA 90 bp AATCCCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGTGTCCTGGTCCGGGATaGAGGGCCGCATCCCAAGGA +
Preference number: 2 (lower is better)
Translates to: NPCGHPVRWMGAELTGQMCPGPG*RAASQG
Trigger: TCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACA...CATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR TCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTCAGAGGTGGGCTGCTaGGCCACGCCGTCCGCAGGG +
Preference number: 2 (lower is better)
Translates to: VLEILFSVGQQVEPTLHASEVGC*ATPSAG
Trigger: CCCTGCGGACGGCGTGGCTCAGCAGCCCACCTCTGA...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp AATCCCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGCAAGGAGGAGGAACTTaGGCCGGTCTCCGTAGAGCT +
Preference number: 2 (lower is better)
Translates to: NPCGHPVRWMGAELTGQMQGGGT*AGLRRA
Trigger: AGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCTTG...CATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGGGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR GCA 90 bp CGAGTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATCAGCCTCCAGAAAGCTaGGGCGTCCCGGGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: RVLEILFSVGQQVEPTLHQPPES*GVPGRR
Trigger: CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTG...ATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAACTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR CCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGGTCTTAAGACCAGAATaGGACCCAGATCATCCCCCT +
Preference number: 2 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTEVLRPE*DPDHPP
Trigger: AGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGAC...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR TCA 90 bp ATCAGGGGATGGGAGACCCTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTCAGAGGTGGGCTGCTaGGCCACGCCGTCCGCAGGG +
Preference number: 2 (lower is better)
Translates to: IRGWETLTFRALKRPSTLSEVGC*ATPSAG
Trigger: CCCTGCGGACGGCGTGGCTCAGCAGCCCACCTCTGA...CAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAGGGTCTCCCATCCCCTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp GATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAACCGCGCCATCGTAGCTaGGCACTGCGGAGGCCGACG +
Preference number: 2 (lower is better)
Translates to: DSLKPRPLFLNHSFSICKPRHRS*ALRRPT
Trigger: CGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGG...TTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR GCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCAGCGCCTCGATGTCGTaGGTGATGTCAGCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFSASMS*VMSASS
Trigger: GCTGCTGGCTGACATCACGCACGACATCGAGGCGCT...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR CCA 90 bp TCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCGCTGAGACTCAGAGGTaGGCTGCTGAGCCACGCCGT +
Preference number: 2 (lower is better)
Translates to: SGDSLKPRPLFLNHSFSIAETQR*AAEPRR
Trigger: ACGGCGTGGCTCAGCAGCCCACCTCTGAGTCTCAGC...GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR CCA 90 bp TCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCCGTCCGCAGGGGCGGTaGCTACAGGTAGTTGTCTTC +
Preference number: 2 (lower is better)
Translates to: SGDSLKPRPLFLNHSFSIRPQGR*LQVVVF
Trigger: GAAGACAACTACCTGTAGCCACCGCCCCTGCGGACG...GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR TCA 90 bp GCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGTTAGTATGGTCAGTTTaGGGTCATATAAGGAGAATC +
Preference number: 2 (lower is better)
Translates to: ATLLGGWGLSSLDRWGNGLVWSV*GHIRRI
Trigger: GATTCTCCTTATATGACCTCAAACTGACCATACTAA...CCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp GATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAACAGGTAGTTGTCTTCTaGGGCGTCGCTCCCGCCCCT +
Preference number: 2 (lower is better)
Translates to: DSLKPRPLFLNHSFSICKQVVVF*GVAPAP
Trigger: AGGGGCGGGAGCGACGCCGCAGAAGACAACTACCTG...TTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR GCA 90 bp CTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGGGAGCCCCGGGTGACTaGCCCGGACTTCAGGGCCCG +
Preference number: 2 (lower is better)
Translates to: LTFRALKRPSTLFSMVSLGAPGD*PGLQGP
Trigger: CGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCC...CAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR GCA 90 bp AGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATATCGTAGCTGCGCACTaGGGAGGCCGACGTGGAGCT +
Preference number: 2 (lower is better)
Translates to: RALKRPSTLFSMVSLRSYIVAAH*GGRRGA
Trigger: AGCTCCACGTCGGCCTCCGCAGTGCGCAGCTACGAT...ATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR-3UTR CCA 90 bp CTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGGCTGAGACTCAGAGGTaGGCTGCTGAGCCACGCCGT +
Preference number: 2 (lower is better)
Translates to: LTFRALKRPSTLFSMVSLAETQR*AAEPRR
Trigger: ACGGCGTGGCTCAGCAGCCCACCTCTGAGTCTCAGC...CAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR CAA 90 bp TTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTaGAGGTCATATAAGGAGAATCAGGAGATTCCCTCAAGCCCCGTC +
Preference number: 2 (lower is better)
Translates to: FRALKRPSTLFSMVS*RSYKENQEIPSSPV
Trigger: GACGGGGCTTGAGGGAATCTCCTGATTCTCCTTATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR GCA 72 bp CCAGCCCGGCAGAGCGGCCCAGGAGCCCCGGGTGACTaGCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCC +
Preference number: 3 (lower is better)
Translates to: PARQSGPGAPGD*PGLQGPASLSP
Trigger: GGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCGGGCTGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR GCA 72 bp CCTGTGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTaGGCACTGCGGAGGCCGACGTGGAGCTCATGCTGC +
Preference number: 3 (lower is better)
Translates to: PVPRAAAPRHRS*ALRRPTWSSCC
Trigger: GCAGCATGAGCTCCACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCACAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR GCA 72 bp GTGCGTGATGTCAGCCAGCAGCCGGTGGAAGGCCTGTaGCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCG +
Preference number: 3 (lower is better)
Translates to: VRDVSQQPVEGL*LGPLRRAIVAA
Trigger: CGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCACAGGCCTTCCACCGGCTGCTGGCTGACATCACGCAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR GCA 72 bp TCGTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTaGGTGATGTCAGCCAGCAGCCGGTGGAAGGCCTGT +
Preference number: 3 (lower is better)
Translates to: SSSSSGASASMS*VMSASSRWKAC
Trigger: ACAGGCCTTCCACCGGCTGCTGGCTGACATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGACGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR TCA 72 bp CTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGGCTaGTCCCTCTGGACTTCTGGGACAAAGCAGGATCGC +
Preference number: 3 (lower is better)
Translates to: LRRPGEEGVFWG*SLWTSGTKQDR
Trigger: GCGATCCTGCTTTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGACGCCGCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR TCA 72 bp GGAAGCCCTCGAAGTAGCCGATGTCCTGGTCCGGGATaGAGGGCCGCATCCCAAGGAGGAGGAACTTGCGCC +
Preference number: 3 (lower is better)
Translates to: GSPRSSRCPGPG*RAASQGGGTCA
Trigger: GGCGCAAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACATCGGCTACTTCGAGGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
3UTR CCA 72 bp CCCTCAGTAATCCCTGTGGCCACCCTGTTAGGTGGATaGGGGCTGAGCTCACTGGACAGATGGGGTAACGGG +
Preference number: 3 (lower is better)
Translates to: PSVIPVATLLGG*GLSSLDRWGNG
Trigger: CCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGGGATTACTGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR CCA 72 bp CTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATaGGGTAACGGGAGGCACACAGAGGTTACGACACTA +
Preference number: 3 (lower is better)
Translates to: LLGGWGLSSLDR*GNGRHTEVTTL
Trigger: TAGTGTCGTAACCTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR TCA 72 bp GGTCTTAAGACCAGAATGGGACCCAGATCATCCCCCTaGGTCAACCCTGGGTGGAGGAAACCGTCTACTCCA +
Preference number: 3 (lower is better)
Translates to: GLKTRMGPRSSP*VNPGWRKPSTP
Trigger: TGGAGTAGACGGTTTCCTCCACCCAGGGTTGACTCAGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR-3UTR CAA 90 bp ATCAGGGGATGGGAGACCCTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGGAGCTCATGCTGCGCTaGATGCGGCCGAAGCTGTCA +
Preference number: 3 (lower is better)
Translates to: IRGWETLTFRALKRPSTLELMLR*MRPKLS
Trigger: TGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCTC...CAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAGGGTCTCCCATCCCCTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp ACTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGGCTGCTCCTACAGGCTaGCCGGCGCCCGGCCTTGGG +
Preference number: 4 (lower is better)
Translates to: TAPDFRARLRFPPAGHSRAAPTG*PAPGLG
Trigger: CCCAAGGCCGGGCGCCGGGCAGCCTGTAGGAGCAGC...CCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTACGCCGGCGGCTCACGCTaGTCCTACAGGCTGCCCGGC +
Preference number: 4 (lower is better)
Translates to: APDFRARLRFPPAGHSRYAGGSR*SYRLPG
Trigger: GCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCCGGC...GTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CGGCAGAGCGGCCCAGGAGCCCCGGGTGACTGCCCCGGACTTCAGGGCCCGGCTAGCGCCTCGATGTCGTaGGTGATGTCAGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: RQSGPGAPGDCPGLQGPASASMS*VMSASS
Trigger: GCTGCTGGCTGACATCACGCACGACATCGAGGCGCT...AGCCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp ACTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGGGAGCCCCGGGTGACTaGCCCGGACTTCAGGGCCCG +
Preference number: 4 (lower is better)
Translates to: TAPDFRARLRFPPAGHSRGAPGD*PGLQGP
Trigger: CGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCC...CCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CCGTCCGCAGGGGCGGTGGCTACAGGTAGTTGTCTTCTGCGGCGTCGCTCCCGCAGGCTGCAGATGGTGTaGCGCCGCTCCGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: PSAGAVATGSCLLRRRSRRLQMV*RRSAVP
Trigger: GGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCT...GCGGGAGCGACGCCGCAGAAGACAACTACCTGTAGCCACCGCCCCTGCGGACGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp CGGCAGAGCGGCCCAGGAGCCCCGGGTGACTGCCCCGGACTTCAGGGCCCGGCTTGCAATAGTCCTGGATaGGCAGCCCCAGCCGGTACT +
Preference number: 4 (lower is better)
Translates to: RQSGPGAPGDCPGLQGPACNSPG*AAPAGT
Trigger: AGTACCGGCTGGGGCTGCCCATCCAGGACTATTGCA...AGCCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TTGATGCGGCCGAAGCTGTCAGTGAGGATGCCGCCCTCGCGGATGCCCACGCCCCATTGTCGCGCCAGGTaGGCAGCAGGCAGCGGGCAG +
Preference number: 4 (lower is better)
Translates to: LMRPKLSVRMPPSRMPTPHCRAR*AAGSGQ
Trigger: CTGCCCGCTGCCTGCTGCTCACCTGGCGCGACAATG...GGGCGTGGGCATCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCCGCATCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTGGTGGCCCAGGAACTTaGCCTCTTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRGGPGT*PLSPGS
Trigger: ACTACCTGGAGAAAGAGGTCAAGTTCCTGGGCCACC...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp CCGTCCGCAGGGGCGGTGGCTACAGGTAGTTGTCTTCTGCGGCGTCGCTCCCGCCAGACAGGCTCAGGATaGTGTCCTGCTCCGCCGTGG +
Preference number: 4 (lower is better)
Translates to: PSAGAVATGSCLLRRRSRQTGSG*CPAPPW
Trigger: CCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTG...GCGGGAGCGACGCCGCAGAAGACAACTACCTGTAGCCACCGCCCCTGCGGACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTGCTTCAGCAGGCCTGTaGAATAGTCCTGGATGGGCA +
Preference number: 4 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRASAGL*NSPGWA
Trigger: TGCCCATCCAGGACTATTGCACAGGCCTGCTGAAGC...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp GATGTCCTGGTCCGGGATGAAGGGCCGCATCCCAAGGAGGAGGAACTTGCGCCGAGTAGGCGTCGGGGCTaGGGTCCTGCGGGTCGAGCG +
Preference number: 4 (lower is better)
Translates to: DVLVRDEGPHPKEEELAPSRRRG*GPAGRA
Trigger: CGCTCGACCCGCAGGACCCCAGCCCCGACGCCTACT...CGGCGCAAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp CCCGGCAGAGCGGCCCAGGAGCCCCGGGTGACTGCCCCGGACTTCAGGGCCCGGTCAGGCATCAGGGGATaGGAGACCCTGACATTTAGA +
Preference number: 4 (lower is better)
Translates to: PGRAAQEPRVTAPDFRARSGIRG*ETLTFR
Trigger: TCTAAATGTCAGGGTCTCCCATCCCCTGATGCCTGA...CCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR CAA 72 bp CGCACTGCGGAGGCCGACGTGGAGCTCATGCTGCGCTaGATGCGGCCGAAGCTGTCAGTGAGGATGCCGCCC +
Preference number: 4 (lower is better)
Translates to: RTAEADVELMLR*MRPKLSVRMPP
Trigger: GGGCGGCATCCTCACTGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCTCCACGTCGGCCTCCGCAGTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp ACTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGCACCCAGACCGGTCTTaGGCACTAGCAGGTGCAGCG +
Preference number: 4 (lower is better)
Translates to: TAPDFRARLRFPPAGHSRHPDRS*ALAGAA
Trigger: CGCTGCACCTGCTAGTGCTCAAGACCGGTCTGGGTG...CCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTTCTGGTCCCCGTAGATaGTCTGGAAGACCTGACAGA +
Preference number: 4 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRSGPRR*SGRPDR
Trigger: TCTGTCAGGTCTTCCAGATCATCTACGGGGACCAGA...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp GCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTACCCTCGATGTCGTGCGTaGTGTCAGCCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: APDFRARLRFPPAGHSRYPRCRA*CQPAAG
Trigger: ACCGGCTGCTGGCTGACATCACGCACGACATCGAGG...GTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGTGCCGCCCTCGCGGATaGCCACGCCCTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTECRPRG*PRPPGS
Trigger: GCTTCCTGGAGGGCGTGGGCATCCGCGAGGGCGGCA...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TCCTCGTCGTCGTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGGGACACTCCAGGTACTaGATGGCCCCGGGCCCCAAG +
Preference number: 4 (lower is better)
Translates to: SSSSSSSSGASASMSCVMGHSRY*MAPGPK
Trigger: CTTGGGGCCCGGGGCCATGCAGTACCTGGAGTGTCC...CATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGACGACGACGAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp GATGTCCTGGTCCGGGATGAAGGGCCGCATCCCAAGGAGGAGGAACTTGCGCCGAGTCCAGGCTGCAGATaGTGTGGCGCCGCTCCGCGG +
Preference number: 4 (lower is better)
Translates to: DVLVRDEGPHPKEEELAPSPGCR*CGAAPR
Trigger: CCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACT...CGGCGCAAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACATC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp TTGATGCGGCCGAAGCTGTCAGTGAGGATGCCGCCCTCGCGGATGCCCACGCCCGCTGAGACTCAGAGGTaGGCTGCTGAGCCACGCCGT +
Preference number: 4 (lower is better)
Translates to: LMRPKLSVRMPPSRMPTPAETQR*AAEPRR
Trigger: ACGGCGTGGCTCAGCAGCCCACCTCTGAGTCTCAGC...GGGCGTGGGCATCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCCGCATCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp CTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTGCTGAGACTCAGAGGTaGGCTGCTGAGCCACGCCGT +
Preference number: 4 (lower is better)
Translates to: LPRTSGPGFAFPLQDTPGAETQR*AAEPRR
Trigger: ACGGCGTGGCTCAGCAGCCCACCTCTGAGTCTCAGC...ACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGTCAGCCAGCAGTGTCCTGGTCCGGGATaGAGGGCCGCATCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: VVVIGGQRLDVVRDVSQQCPGPG*RAASQG
Trigger: TCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACA...CTGCTGGCTGACATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp ACTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGAGCTCATGCTGCGCTTaGTGCGGCCGAAGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: TAPDFRARLRFPPAGHSRSSCCA*CGRSCQ
Trigger: CTGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCT...CCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTACGGTGTGTTCTGGGGCTaGTCCCTCTGGACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: APDFRARLRFPPAGHSRYGVFWG*SLWTSG
Trigger: CCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACC...GTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGCAGACAGGCTCAGGATaGTGTCCTGCTCCGCCGTGG +
Preference number: 4 (lower is better)
Translates to: PSSASRKLRRPGEEGVFWQTGSG*CPAPPW
Trigger: CCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTG...CCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GTAGCCGATGTCCTGGTCCGGGATGAAGGGCCGCATCCCAAGGAGGAGGAACTTCCGCGCCATCGTAGCTaGGCACTGCGGAGGCCGACG +
Preference number: 4 (lower is better)
Translates to: VADVLVRDEGPHPKEEELPRHRS*ALRRPT
Trigger: CGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGG...AAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACATCGGCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp GCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTACGGAGCTCGTCCCGACTaGAGGGGTTCAGTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: APDFRARLRFPPAGHSRYGARPD*RGSVRK
Trigger: CTTCCTCACTGAACCCCTCCAGTCGGGACGAGCTCC...GTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGTCCAGGCTGCAGATaGTGTGGCGCCGCTCCGCGG +
Preference number: 4 (lower is better)
Translates to: ATLLGGWGLSSLDRWGNGSPGCR*CGAAPR
Trigger: CCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACT...CCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTACAGCATCGCAAACTGCTaGATCTCGAGGGGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: APDFRARLRFPPAGHSRYSIANC*ISRGPS
Trigger: GCTGGGGCCCCTCGAGATCCAGCAGTTTGCGATGCT...GTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp CCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGAGCTCATGCTGCGCTTaGTGCGGCCGAAGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: PSSASRKLRRPGEEGVFWSSCCA*CGRSCQ
Trigger: CTGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCT...CCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCAGCCGCTGCTCCTACAGGCTaGCCGGCGCCCGGCCTTGGG +
Preference number: 4 (lower is better)
Translates to: FFSQSASRWSPLFMPSSAAAPTG*PAPGLG
Trigger: CCCAAGGCCGGGCGCCGGGCAGCCTGTAGGAGCAGC...GGCTGAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGCGGCGGCGATCTCGTaGGTAGGGATTCGCAGAATG +
Preference number: 4 (lower is better)
Translates to: PSSASRKLRRPGEEGVFWAAAIS*VGIRRM
Trigger: CATTCTGCGAATCCCTACGCACGAGATCGCCGCCGC...CCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGTGTGGTCGCTGCCGCTaGAGTGGGAGCCATGGAAAG +
Preference number: 4 (lower is better)
Translates to: PSSASRKLRRPGEEGVFWCGRCR*SGSHGK
Trigger: CTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACA...CCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CACTCTTCATGCCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGATCGTAGCTGCGCACTaGGGAGGCCGACGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: HSSCLPQPPESCGVPGRRIVAAH*GGRRGA
Trigger: AGCTCCACGTCGGCCTCCGCAGTGCGCAGCTACGAT...CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGGCATGAAGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CACTCTTCATGCCTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGACAAAGCAGGATCGCTaGTCAGCCCCAGCCCGGCAG +
Preference number: 4 (lower is better)
Translates to: HSSCLPQPPESCGVPGRRTKQDR*SAPARQ
Trigger: CTGCCGGGCTGGGGCTGAGCAGCGATCCTGCTTTGT...CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAGGCATGAAGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGTCAGCCAGCAGGCTCCTTCAGCTGCCTaGCGGTGTCTAGCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: VVVIGGQRLDVVRDVSQQAPSAA*RCLAAA
Trigger: TGCAGCTGCTAGACACCGCCAGGCAGCTGAAGGAGC...CTGCTGGCTGACATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp GTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGTCAGCCAGCAGGCGGCTGCAGAGCCATaGCCGTTCAGGTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: VVVIGGQRLDVVRDVSQQAAAEP*PFRCGC
Trigger: ACATCCACACCTGAACGGCCATGGCTCTGCAGCCGC...CTGCTGGCTGACATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp CTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGCGTCCGCAGGGGCGGTaGCTACAGGTAGTTGTCTTC +
Preference number: 4 (lower is better)
Translates to: LPQPPESCGVPGRRVCSGRPQGR*LQVVVF
Trigger: GAAGACAACTACCTGTAGCCACCGCCCCTGCGGACG...CCCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGACTCCAGGTACTGCATaGCCCCGGGCCCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTETPGTA*PRAPRA
Trigger: TGCCCTTGGGGCCCGGGGCCATGCAGTACCTGGAGT...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TCCTCGTCGTCGTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGGAGCCATTATGCGGCTaGAGAGCCATGGCCGTTCAG +
Preference number: 4 (lower is better)
Translates to: SSSSSSSSGASASMSCVMEPLCG*RAMAVQ
Trigger: CTGAACGGCCATGGCTCTGCAGCCGCATAATGGCTC...CATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGACGACGACGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGGACTGCTGTGGTCGCTaGCGCTGCAGTGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTEDCCGR*RCSGSH
Trigger: ATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTC...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp ATGTCCTGGTCCGGGATGAAGGGCCGCATCCCAAGGAGGAGGAACTTGCGCCGGAGCAGCATCGCAAACTaGTGGATCTCGAGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: MSWSGMKGRIPRRRNLRRSSIAN*WISRGP
Trigger: GGGGCCCCTCGAGATCCAGCAGTTTGCGATGCTGCT...CCGGCGCAAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp CTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATCAGGGTCAGAGGTGGGCTGCTaGGCCACGCCGTCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: LGGGNRLLHTDCTSQASGSEVGC*ATPSAG
Trigger: CCCTGCGGACGGCGTGGCTCAGCAGCCCACCTCTGA...CCCTGATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGTCCCCGAAGCAAAGCTaGGACTCAGAGGTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTESPKQS*DSEVGC
Trigger: GCAGCCCACCTCTGAGTCTCAGCTTTGCTTCGGGGA...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTCCCGGGGAGGAGGGTGTGTTCTGGGGCTGATCCCTCTGGACTTCTGGGACAAGGTGTGTTCTGGGGCTaGTCCCTCTGGACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: VPGRRVCSGADPSGLLGQGVFWG*SLWTSG
Trigger: CCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACC...TTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCGCCGGCGGCTCACGCTaGTCCTACAGGCTGCCCGGC +
Preference number: 4 (lower is better)
Translates to: EILFSVGQQVEPTLHAFLAGGSR*SYRLPG
Trigger: GCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCCGGC...GAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGCTCAGGATGCTGTCCTaGTCCGCCGTGGTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTELRMLS*SAVVFS
Trigger: GCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAG...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTCTCAGGATGCTGTCCTaGTCCGCCGTGGTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: PVATLLGGWGLSSLDRWGLRMLS*SAVVFS
Trigger: GCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAG...ACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGTTGAGCACTAGCAGGTaGAGCGCGTCGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ATLLGGWGLSSLDRWGNGLSTSR*SASSCR
Trigger: CCTGCAGGACGACGCGCTGCACCTGCTAGTGCTCAA...CCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTGATGCGGCCGAAGCTGTCAGTGAGGATGCCGCCCTCGCGGATGCCCACGCCCCGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LMRPKLSVRMPPSRMPTPRAAVT*FKGVLG
Trigger: TCCCAGGACACCTTTGAAGCATGTTACAGCGGCACG...GGGCGTGGGCATCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCCGCATCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCGGAGCCCCGGGTGACTaGCCCGGACTTCAGGGCCCG +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSGAPGD*PGLQGP
Trigger: CGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCC...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTGCGGCTGCAGAGCCATaGCCGTTCAGGTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: PVATLLGGWGLSSLDRWGAAAEP*PFRCGC
Trigger: ACATCCACACCTGAACGGCCATGGCTCTGCAGCCGC...ACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGGCTTCAAAGGTGTCCTaGGAGCCATTATGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: LPQPPESCGVPGRRVCSGASKVS*EPLCGC
Trigger: GCAGCCGCATAATGGCTCCCAGGACACCTTTGAAGC...CCCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp GTCCCGGGGAGGAGGGTGTGTTCTGGGGCTGATCCCTCTGGACTTCTGGGACAAAGCATCGCAAACTGCTaGATCTCGAGGGGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: VPGRRVCSGADPSGLLGQSIANC*ISRGPS
Trigger: GCTGGGGCCCCTCGAGATCCAGCAGTTTGCGATGCT...TTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp CTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATCAGGGCATTGTCGCGCCAGGTaGGCAGCAGGCAGCGGGCAG +
Preference number: 4 (lower is better)
Translates to: LGGGNRLLHTDCTSQASGHCRAR*AAGSGQ
Trigger: CTGCCCGCTGCCTGCTGCTCACCTGGCGCGACAATG...CCCTGATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp CTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTTCCAGATCCTGGAGCTaGAAAAACCCTTGTTTGGGG +
Preference number: 4 (lower is better)
Translates to: LPRTSGPGFAFPLQDTPGSRSWS*KNPCLG
Trigger: CCCCAAACAAGGGTTTTTTCAGCTCCAGGATCTGGA...ACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCCCGCGCCATCGTAGCTaGGCACTGCGGAGGCCGACG +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSPRHRS*ALRRPT
Trigger: CGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGG...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GTCCCGGGGAGGAGGGTGTGTTCTGGGGCTGATCCCTCTGGACTTCTGGGACAAGCTTCGCTTTCCCCCTaGAGGACACTCCAGGTACTG +
Preference number: 4 (lower is better)
Translates to: VPGRRVCSGADPSGLLGQASLSP*RTLQVL
Trigger: CAGTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGC...TTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TCCTCGTCGTCGTCGTCGTCATCGGGGGCCAGCGCCTCGATGTCGTGCGTGATGATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAG +
Preference number: 4 (lower is better)
Translates to: SSSSSSSSGASASMSCVMMAVQV*MCSGSQ
Trigger: CTGGCTACCACTACACATCCACACCTGAACGGCCAT...CATCACGCACGACATCGAGGCGCTGGCCCCCGATGACGACGACGACGACGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CCA 90 bp CTTCCTCAGCCTCCAGAAAGCTGCGGCGTCCCGGGGAGGAGGGTGTGTTCTGGGATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAG +
Preference number: 4 (lower is better)
Translates to: LPQPPESCGVPGRRVCSGMAVQV*MCSGSQ
Trigger: CTGGCTACCACTACACATCCACACCTGAACGGCCAT...CCCAGAACACACCCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTGAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTAGCCGATGTCCTGGTCCGGGATGAAGGGCCGCATCCCAAGGAGGAGGAACTTTGGCTACAGCCAGGATaGCCAGGTTGCAGTAGGCGT +
Preference number: 4 (lower is better)
Translates to: VADVLVRDEGPHPKEEELWLQPG*PGCSRR
Trigger: ACGCCTACTGCAACCTGGTCATCCTGGCTGTAGCCA...AAGTTCCTCCTCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACATCGGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR TCA 90 bp GTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGAAGACCTGACAGATaGGTGCGCAGGACTCCTCTG +
Preference number: 4 (lower is better)
Translates to: VATLLGGWGLSSLDRWGNGRPDR*VRRTPL
Trigger: CAGAGGAGTCCTGCGCACTCATCTGTCAGGTCTTCC...GTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCGGCCGAAGCTGTCAGTaGGGATGCCGCCCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: VLEILFSVGQQVEPTLHAGRSCQ*GCRPRG
Trigger: TCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCC...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCCCCAGGAGCCCCGGGTaGCTGCCCCGGACTTCAGGG +
Preference number: 4 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFPRSPG*LPRTSG
Trigger: CCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGG...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACTACGTCCCATCTGTGTaGCAGCTCTCACTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: VATLLGGWGLSSLDRWGNYVPSV*QLSLRL
Trigger: CAGCCGCAGTGAGAGCTGCCACACAGATGGGACGTA...GTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR TCA 90 bp CTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATCAGGGTGTCCTGGTCCGGGATaGAGGGCCGCATCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LGGGNRLLHTDCTSQASGCPGPG*RAASQG
Trigger: TCCTTGGGATGCGGCCCTTCATCCCGGACCAGGACA...CCCTGATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp CGAGTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGGCCGAAGCTGTCAGTaGGGATGCCGCCCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: RVLEILFSVGQQVEPTLHGRSCQ*GCRPRG
Trigger: TCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCC...ATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAACTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGCCGTCTACTCCACACTaGCTGTACAAGTCAGGCATC +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTEPSTPH*LYKSGI
Trigger: GATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGG...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCAGCCTCCTGGGAGCCATTATaGGGCTGCAGAGCCATGGCC +
Preference number: 4 (lower is better)
Translates to: FFSQSASRWSPLFMPSSASWEPL*GCRAMA
Trigger: GGCCATGGCTCTGCAGCCGCATAATGGCTCCCAGGA...GGCTGAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR GCA 90 bp GGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACGGGAGGCACACAGAGCGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: GGWGLSSLDRWGNGRHTERAAVT*FKGVLG
Trigger: TCCCAGGACACCTTTGAAGCATGTTACAGCGGCACG...CTCTGTGTGCCTCCCGTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCAGCCAGCAGCATCGCAAACTaGTGGATCTCGAGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: FFSQSASRWSPLFMPSSASSIAN*WISRGP
Trigger: GGGGCCCCTCGAGATCCAGCAGTTTGCGATGCTGCT...GGCTGAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTACACCAGCCTTCGGATaGGGGATACAAAGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: PVATLLGGWGLSSLDRWGTPAFG*GIQSPS
Trigger: AGAAGGGCTTTGTATCCCCCATCCGAAGGCTGGTGT...ACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTCTTAAGACCAGAATGGGACCCAGATCATCCCCCTGAGTCAACCCTGGGTGGATCCCCGAAGCAAAGCTaGGACTCAGAGGTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VLRPEWDPDHPPESTLGGSPKQS*DSEVGC
Trigger: GCAGCCCACCTCTGAGTCTCAGCTTTGCTTCGGGGA...TCCACCCAGGGTTGACTCAGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp ATCAGGGGATGGGAGACCCTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGCCCAGGAGCCCCGGGTaGCTGCCCCGGACTTCAGGG +
Preference number: 4 (lower is better)
Translates to: IRGWETLTFRALKRPSTLPRSPG*LPRTSG
Trigger: CCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGG...CAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAGGGTCTCCCATCCCCTGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCCCCAGATCATCCCCCTaGGTCAACCCTGGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: EILFSVGQQVEPTLHAFLPRSSP*VNPGWR
Trigger: CCTCCACCCAGGGTTGACTCAGGGGGATGATCTGGG...GAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCCCCAGATCATCCCCCTaGGTCAACCCTGGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: VLEILFSVGQQVEPTLHAPRSSP*VNPGWR
Trigger: CCTCCACCCAGGGTTGACTCAGGGGGATGATCTGGG...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TCAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCAGCGGTGTCTAGCAGCTaGAGGAGCTCGTCCCGACTG +
Preference number: 4 (lower is better)
Translates to: STLGGGNRLLHTDCTSQAAVSSS*RSSSRL
Trigger: CAGTCGGGACGAGCTCCTGCAGCTGCTAGACACCGC...TGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCGACTGCTGTGGTCGCTaGCGCTGCAGTGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: VLEILFSVGQQVEPTLHADCCGR*RCSGSH
Trigger: ATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTC...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCCAGGTAGTTGTCTTCTaGGGCGTCGCTCCCGCCCCT +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSQVVVF*GVAPAP
Trigger: AGGGGCGGGAGCGACGCCGCAGAAGACAACTACCTG...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CGAGTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGGACACTCCAGGTACTaGATGGCCCCGGGCCCCAAG +
Preference number: 4 (lower is better)
Translates to: RVLEILFSVGQQVEPTLHGHSRY*MAPGPK
Trigger: CTTGGGGCCCGGGGCCATGCAGTACCTGGAGTGTCC...ATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAACTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATTGTGGCAGCTCTCACTaGGGCTGCAGAGCCATGGCC +
Preference number: 4 (lower is better)
Translates to: QPWVEETVYSTLTVQVRHCGSSH*GCRAMA
Trigger: GGCCATGGCTCTGCAGCCGCAGTGAGAGCTGCCACA...ATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR CCA 90 bp TCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCAGGCTGCAGATGGTGTaGCGCCGCTCCGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: SGDSLKPRPLFLNHSFSIRLQMV*RRSAVP
Trigger: GGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCT...GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCAGTAGGCGTCGGGGCTaGGGTCCTGCGGGTCGAGCG +
Preference number: 4 (lower is better)
Translates to: SGDSLKPRPLFLNHSFSISRRRG*GPAGRA
Trigger: CGCTCGACCCGCAGGACCCCAGCCCCGACGCCTACT...GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp AATCCCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGCCGTCTACTCCACACTaGCTGTACAAGTCAGGCATC +
Preference number: 4 (lower is better)
Translates to: NPCGHPVRWMGAELTGQMPSTPH*LYKSGI
Trigger: GATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGG...CATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGGGATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTTGAGCACTAGCAGGTaGAGCGCGTCGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSLSTSR*SASSCR
Trigger: CCTGCAGGACGACGCGCTGCACCTGCTAGTGCTCAA...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCTGCGCAGGACTCCTCTaGAGCGTCCCTGTTGGCTAC +
Preference number: 4 (lower is better)
Translates to: EILFSVGQQVEPTLHAFLCAGLL*SVPVGY
Trigger: GTAGCCAACAGGGACGCTGCAGAGGAGTCCTGCGCA...GAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTGCGCAGGACTCCTCTaGAGCGTCCCTGTTGGCTAC +
Preference number: 4 (lower is better)
Translates to: VLEILFSVGQQVEPTLHACAGLL*SVPVGY
Trigger: GTAGCCAACAGGGACGCTGCAGAGGAGTCCTGCGCA...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATAGCTCTCACTGCGGCTaGAGAGCCATGGCCGTTCAG +
Preference number: 4 (lower is better)
Translates to: QPWVEETVYSTLTVQVRHSSHCG*RAMAVQ
Trigger: CTGAACGGCCATGGCTCTGCAGCCGCAGTGAGAGCT...ATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR CCA 90 bp ATCAGGGGATGGGAGACCCTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGCCCGGCGCCCGGCCTTaGGGAACACCAGCCTTCGGA +
Preference number: 4 (lower is better)
Translates to: IRGWETLTFRALKRPSTLPGARP*GTPAFG
Trigger: TCCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGG...CAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAGGGTCTCCCATCCCCTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCCAGTCGGCCAGCAGGTaGAGCCCACTCTTCATGCCT +
Preference number: 4 (lower is better)
Translates to: VLEILFSVGQQVEPTLHAQSASR*SPLFMP
Trigger: AGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTG...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CTGCCCCGGACTTCAGGGCCCGGCTTCGCTTTCCCCCTGCAGGACACTCCAGGTAATAGGACCGAGTTCTaGAAATTCTTTTCTCAGTCG +
Preference number: 4 (lower is better)
Translates to: LPRTSGPGFAFPLQDTPGNRTEF*KFFSQS
Trigger: CGACTGAGAAAAGAATTTCCAGAACTCGGTCCTATT...ACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGCCGGGCCCTGAAGTCCGGGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCCCTCGATGTCGTGCGTaGTGTCAGCCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFPRCRA*CQPAAG
Trigger: ACCGGCTGCTGGCTGACATCACGCACGACATCGAGG...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GTCTTAAGACCAGAATGGGACCCAGATCATCCCCCTGAGTCAACCCTGGGTGGAAGGAGCTGCAGCAGCTaGAGTCGGCATCATAGGCAT +
Preference number: 4 (lower is better)
Translates to: VLRPEWDPDHPPESTLGGRSCSS*SRHHRH
Trigger: ATGCCTATGATGCCGACTTCAGCTGCTGCAGCTCCT...TCCACCCAGGGTTGACTCAGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR CCA 90 bp GATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAACCCGGCGCCCGGCCTTaGGGAACACCAGCCTTCGGA +
Preference number: 4 (lower is better)
Translates to: DSLKPRPLFLNHSFSICKPGARP*GTPAFG
Trigger: TCCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGG...TTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTGTCCTGCTCCGCCGTaGTCTTCAGCGGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFCPAPP*SSAAAP
Trigger: AGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACA...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCCCCCTGAGTCAACCCTaGGTGGAGGAAACCGTCTAC +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSPLSQP*VEETVY
Trigger: GTAGACGGTTTCCTCCACCCAGGGTTGACTCAGGGG...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCGCGGCGGCGATCTCGTaGGTAGGGATTCGCAGAATG +
Preference number: 4 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFAAAIS*VGIRRM
Trigger: CATTCTGCGAATCCCTACGCACGAGATCGCCGCCGC...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTCAGCCTCCAGAAAGCTaGGGCGTCCCGGGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: PRPLFLNHSFSICKIGPSQPPES*GVPGRR
Trigger: CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTG...ACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GGAGAATCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCGCTCCTTCAGCTGCCTaGCGGTGTCTAGCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: GESGDSLKPRPLFLNHSFAPSAA*RCLAAA
Trigger: TGCAGCTGCTAGACACCGCCAGGCAGCTGAAGGAGC...GAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGATTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCATGATCTGGAAGACCTaGCAGATGAGTGCGCAGGAC +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSMIWKT*QMSAQD
Trigger: GTCCTGCGCACTCATCTGTCAGGTCTTCCAGATCAT...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TCAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCAATGATCTGGAAGACCTaGCAGATGAGTGCGCAGGAC +
Preference number: 4 (lower is better)
Translates to: STLGGGNRLLHTDCTSQAMIWKT*QMSAQD
Trigger: GTCCTGCGCACTCATCTGTCAGGTCTTCCAGATCAT...TGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp AAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCCAGCCTCCAGAAAGCTaGGGCGTCCCGGGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KGTTFIELLSGARPSSKVQPPES*GVPGRR
Trigger: CCTCCTCCCCGGGACGCCGCAGCTTTCTGGAGGCTG...GACCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CGAGTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGTCACCCAGGTAAGGTaGCCCAGGAACTTGACCTCT +
Preference number: 4 (lower is better)
Translates to: RVLEILFSVGQQVEPTLHVTQVR*PRNLTS
Trigger: AGAGGTCAAGTTCCTGGGCCACCTTACCTGGGTGAC...ATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAACTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGACTCCAGGTACTGCATaGCCCCGGGCCCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: GKEQHLLSSYRVLDPVLRTPGTA*PRAPRA
Trigger: TGCCCTTGGGGCCCGGGGCCATGCAGTACCTGGAGT...CCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATCAGGGTCAGGCATCAGGGGATaGGAGACCCTGACATTTAGA +
Preference number: 4 (lower is better)
Translates to: LGGGNRLLHTDCTSQASGSGIRG*ETLTFR
Trigger: TCTAAATGTCAGGGTCTCCCATCCCCTGATGCCTGA...CCCTGATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGCTCCAAGCCCAGACTaGTGTGGTCGCTGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: WKGTTFIELLSGARPSSKAPSPD*CGRCRC
Trigger: GCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGC...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTATCGTAGCTGCGCACTaGGGAGGCCGACGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: PRPLFLNHSFSICKIGPSIVAAH*GGRRGA
Trigger: AGCTCCACGTCGGCCTCCGCAGTGCGCAGCTACGAT...ACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp GATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAATGTCCTGCTCCGCCGTaGTCTTCAGCGGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: DSLKPRPLFLNHSFSICKCPAPP*SSAAAP
Trigger: AGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACA...TTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TCAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCACATGGAAAGAAGGTGTaGACGTGCCGCTGTAACATG +
Preference number: 4 (lower is better)
Translates to: STLGGGNRLLHTDCTSQAHGKKV*TCRCNM
Trigger: CATGTTACAGCGGCACGTCCACACCTTCTTTCCATG...TGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TCAGGAGATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCCCCCTGAGTCAACCCTaGGTGGAGGAAACCGTCTAC +
Preference number: 4 (lower is better)
Translates to: SGDSLKPRPLFLNHSFSIPLSQP*VEETVY
Trigger: GTAGACGGTTTCCTCCACCCAGGGTTGACTCAGGGG...GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATCTCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCGTCTTAAGACCAGAATaGGACCCAGATCATCCCCCT +
Preference number: 4 (lower is better)
Translates to: WKFFSQSASRWSPLFMPSVLRPE*DPDHPP
Trigger: AGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGAC...GGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATGCTTCAAAGGTGTCCTaGGAGCCATTAAAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: QPWVEETVYSTLTVQVRHASKVS*EPLKEL
Trigger: CAGCTCCTTTAATGGCTCCCAGGACACCTTTGAAGC...ATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR TCA 90 bp AGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATTCAGAGGTGGGCTGCTaGGCCACGCCGTCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: RALKRPSTLFSMVSLRSYSEVGC*ATPSAG
Trigger: CCCTGCGGACGGCGTGGCTCAGCAGCCCACCTCTGA...ATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp ATCAGGGGATGGGAGACCCTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGCAAGGAGGAGGAACTTaGGCCGGTCTCCGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: IRGWETLTFRALKRPSTLQGGGT*AGLRRA
Trigger: AGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCTTG...CAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAGGGTCTCCCATCCCCTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGCAGGTAGTTGTCTTCTaGGGCGTCGCTCCCGCCCCT +
Preference number: 4 (lower is better)
Translates to: WKGTTFIELLSGARPSSKQVVVF*GVAPAP
Trigger: AGGGGCGGGAGCGACGCCGCAGAAGACAACTACCTG...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGACAAAGCAGGATCGCTaGTCAGCCCCAGCCCGGCAG +
Preference number: 4 (lower is better)
Translates to: WKGTTFIELLSGARPSSKTKQDR*SAPARQ
Trigger: CTGCCGGGCTGGGGCTGAGCAGCGATCCTGCTTTGT...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CGAGTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATCATGGAAAGAAGGTGTaGACGTGCCGCTGTAACATG +
Preference number: 4 (lower is better)
Translates to: RVLEILFSVGQQVEPTLHHGKKV*TCRCNM
Trigger: CATGTTACAGCGGCACGTCCACACCTTCTTTCCATG...ATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAACTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GATTCCCTCAAGCCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAATGGCTACAGCCAGGATaGCCAGGTTGCAGTAGGCGT +
Preference number: 4 (lower is better)
Translates to: DSLKPRPLFLNHSFSICKWLQPG*PGCSRR
Trigger: ACGCCTACTGCAACCTGGTCATCCTGGCTGTAGCCA...TTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGGCTTGAGGGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTTCTGGAAATTCTTGCCGCCCTCGCGGATaGCCACGCCCTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: FLNHSFSICKIGPSSGNSCRPRG*PRPPGS
Trigger: GCTTCCTGGAGGGCGTGGGCATCCGCGAGGGCGGCA...AGAATTTCCAGAACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGAGCGCCTCGATGTCGTaGGTGATGTCAGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: WKGTTFIELLSGARPSSKSASMS*VMSASS
Trigger: GCTGCTGGCTGACATCACGCACGACATCGAGGCGCT...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp CCCCGTCCTCTCTTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTGGTGGCCCAGGAACTTaGCCTCTTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: PRPLFLNHSFSICKIGPSGGPGT*PLSPGS
Trigger: ACTACCTGGAGAAAGAGGTCAAGTTCCTGGGCCACC...ACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCTTCCTCAGCCTTAGTATGGTCAGTTTaGGGTCATATAAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: FFSQSASRWSPLFMPSSALVWSV*GHIRRI
Trigger: GATTCTCCTTATATGACCTCAAACTGACCATACTAA...GGCTGAGGAAGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp CTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGGCTCCAAGCCCAGACTaGTGTGGTCGCTGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: LTFRALKRPSTLFSMVSLAPSPD*CGRCRC
Trigger: GCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGC...CAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGCAAGGAGGAGGAACTTaGGCCGGTCTCCGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: WKGTTFIELLSGARPSSKQGGGT*AGLRRA
Trigger: AGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCTTG...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp AAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCCTGCAGTGGGAGCCATaGAAAGAAGGTGTGGACGTG +
Preference number: 4 (lower is better)
Translates to: KGTTFIELLSGARPSSKVLQWEP*KEGVDV
Trigger: CACGTCCACACCTTCTTTCCATGGCTCCCACTGCAG...GACCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CAACCCTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATAATAGGACCGAGTTCTaGAAATTCTTTTCTCAGTCG +
Preference number: 4 (lower is better)
Translates to: QPWVEETVYSTLTVQVRHNRTEF*KFFSQS
Trigger: CGACTGAGAAAAGAATTTCCAGAACTCGGTCCTATT...ATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAGGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp GGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCCAGATCCTGGAGCTaGAAAAACCCTTGTTTGGGG +
Preference number: 4 (lower is better)
Translates to: GKEQHLLSSYRVLDPVLRSRSWS*KNPCLG
Trigger: CCCCAAACAAGGGTTTTTTCAGCTCCAGGATCTGGA...CCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATAAGGAGAAGCCCAGACTGCTGTaGTCGCTGCCGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: LKRPSTLFSMVSLRSYKEKPRLL*SLPLQW
Trigger: CCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTT...CTCCTTATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTTCTGGAAATTCTAAGCCCAGACTGCTGTaGTCGCTGCCGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: FLNHSFSICKIGPSSGNSKPRLL*SLPLQW
Trigger: CCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTT...AGAATTTCCAGAACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp AGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATCGTCCGCAGGGGCGGTaGCTACAGGTAGTTGTCTTC +
Preference number: 4 (lower is better)
Translates to: RALKRPSTLFSMVSLRSYRPQGR*LQVVVF
Trigger: GAAGACAACTACCTGTAGCCACCGCCCCTGCGGACG...ATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGCAGTCGGCCAGCAGGTaGAGCCCACTCTTCATGCCT +
Preference number: 4 (lower is better)
Translates to: LTFRALKRPSTLFSMVSLQSASR*SPLFMP
Trigger: AGGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTG...CAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp TTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCAGGAAGACCTGACAGATaGGTGCGCAGGACTCCTCTG +
Preference number: 4 (lower is better)
Translates to: FRALKRPSTLFSMVSLRSGRPDR*VRRTPL
Trigger: CAGAGGAGTCCTGCGCACTCATCTGTCAGGTCTTCC...TGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATAAGGAGTGTGGTCGCTGCCGCTaGAGTGGGAGCCATGGAAAG +
Preference number: 4 (lower is better)
Translates to: LKRPSTLFSMVSLRSYKECGRCR*SGSHGK
Trigger: CTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACA...CTCCTTATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCAGCTTCGCTTTCCCCCTaGAGGACACTCCAGGTACTG +
Preference number: 4 (lower is better)
Translates to: FRALKRPSTLFSMVSLRSASLSP*RTLQVL
Trigger: CAGTACCTGGAGTGTCCTGCAGGGGGAAAGCGAAGC...TGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATAAGGAGGGAGCTCGTCCCGACTaGAGGGGTTCAGTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: LKRPSTLFSMVSLRSYKEGARPD*RGSVRK
Trigger: CTTCCTCACTGAACCCCTCCAGTCGGGACGAGCTCC...CTCCTTATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp AAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCGTCTTAAGACCAGAATaGGACCCAGATCATCCCCCT +
Preference number: 4 (lower is better)
Translates to: KGTTFIELLSGARPSSKVVLRPE*DPDHPP
Trigger: AGGGGGATGATCTGGGTCCCATTCTGGTCTTAAGAC...GACCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR GCA 90 bp TTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCAGCTTCAGCAGGCCTGTaGAATAGTCCTGGATGGGCA +
Preference number: 4 (lower is better)
Translates to: FRALKRPSTLFSMVSLRSASAGL*NSPGWA
Trigger: TGCCCATCCAGGACTATTGCACAGGCCTGCTGAAGC...TGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp AGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCATATTCTGGTCCCCGTAGATaGTCTGGAAGACCTGACAGA +
Preference number: 4 (lower is better)
Translates to: RALKRPSTLFSMVSLRSYSGPRR*SGRPDR
Trigger: TCTGTCAGGTCTTCCAGATCATCTACGGGGACCAGA...ATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp CTGACATTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGACACCAGCCTTCGGATaGGGGATACAAAGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: LTFRALKRPSTLFSMVSLTPAFG*GIQSPS
Trigger: AGAAGGGCTTTGTATCCCCCATCCGAAGGCTGGTGT...CAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAATGTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CCA 90 bp TTCTTGAACCATAGTTTCTCAATCTGTAAAATAGGACCGAGTTCTGGAAATTCTCTGCAGTGGGAGCCATaGAAAGAAGGTGTGGACGTG +
Preference number: 4 (lower is better)
Translates to: FLNHSFSICKIGPSSGNSLQWEP*KEGVDV
Trigger: CACGTCCACACCTTCTTTCCATGGCTCCCACTGCAG...AGAATTTCCAGAACTCGGTCCTATTTTACAGATTGAGAAACTATGGTTCAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR TCA 90 bp AAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCTTAGTATGGTCAGTTTaGGGTCATATAAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: KGTTFIELLSGARPSSKVLVWSV*GHIRRI
Trigger: GATTCTCCTTATATGACCTCAAACTGACCATACTAA...GACCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
3UTR CAA 72 bp TTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTaGAGGTCATATAAGGAGAATCAGGAGATTCCCTCA +
Preference number: 4 (lower is better)
Translates to: LKRPSTLFSMVS*RSYKENQEIPS
Trigger: TGAGGGAATCTCCTGATTCTCCTTATATGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp CTACCGCCCGGCTTTCCCGCGCCGCCGCCGCCGCCGCCGCCTCCGTaGCGCCGCTCCCAGCTGCCGCTGAACGTCTGCCGTCGCTCCCAG +
Preference number: 5 (lower is better)
Translates to: LPPGFPAPPPPPPPP*RRSQLPLNVCRRSQ
Trigger: CTGGGAGCGACGGCAGACGTTCAGCGGCAGCTGGGAGCGGCGGCACGGAGGCGGCGGCGGCGGCGGCGGCGCGGGAAAGCCGGGCGGTAG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp CCATCCGCCAGTCCAGGCTGCAGATGGTGTGGCGCCGCTCCGCGGTaGCCACCCGCCGCTTCTCGGGCGCCCCGCCTGGCGGGCCGGGGT +
Preference number: 5 (lower is better)
Translates to: PSASPGCRWCGAAPR*PPAASRAPRLAGRG
Trigger: ACCCCGGCCCGCCAGGCGGGGCGCCCGAGAAGCGGCGGGTGGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACTGGCGGATGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp CCCGGCAGAGCGGCCCAGGAGCCCCGGGTGACTGCCCCGGACTTCAGGGCCCGGAGAATGAGCTCTTCATaGTCGCGCCAGGTGAGCAGC +
Preference number: 5 (lower is better)
Translates to: PGRAAQEPRVTAPDFRARRMSSS*SRQVSS
Trigger: GCTGCTCACCTGGCGCGACAATGAAGAGCTCATTCT...CCGGGCCCTGAAGTCCGGGGCAGTCACCCGGGGCTCCTGGGCCGCTCTGCCGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 90 bp GCCGGCGGCTCACGCTGCTCCTACAGGCTGCCCGGCGCCCGGCCTTaGGGAACACCAGCCTTCGGATGGGGGATACAAAGCCCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: AGGSRCSYRLPGARP*GTPAFGWGIQSPSS
Trigger: GGAAGAAGGGCTTTGTATCCCCCATCCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp CAGGTGAGCAGCAGGCAGCGGGCAGACAGGCTCAGGATGCTGTCCTaGTCCGCCGTGGTCTTCAGCGGCAGCTCCTTCAGCTGCCTGGCG +
Preference number: 5 (lower is better)
Translates to: QVSSRQRADRLRMLS*SAVVFSGSSFSCLA
Trigger: CGCCAGGCAGCTGAAGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTGCCCGCTGCCTGCTGCTCACCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp TGCCTCGGGCCGCTGCGCCGCGCCATCGTAGCTGCGCACTGCGGAGGCCGACGTAGAATGAGCTCTTCATaGTCGCGCCAGGTGAGCAGC +
Preference number: 5 (lower is better)
Translates to: CLGPLRRAIVAAHCGGRRRMSSS*SRQVSS
Trigger: GCTGCTCACCTGGCGCGACAATGAAGAGCTCATTCT...ACGTCGGCCTCCGCAGTGCGCAGCTACGATGGCGCGGCGCAGCGGCCCGAGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS CCA 90 bp GCAGGCAGCGGGCAGACAGGCTCAGGATGCTGTCCTGCTCCGCCGTaGTCTTCAGCGGCAGCTCCTTCAGCTGCCTGGCGGTGTCTAGCA +
Preference number: 5 (lower is better)
Translates to: AGSGQTGSGCCPAPP*SSAAAPSAAWRCLA
Trigger: TGCTAGACACCGCCAGGCAGCTGAAGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTGCCCGCTGCCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp CTGGGTGGAGGAAACCGTCTACTCCACACTGACTGTACAAGTCAGGCATCAGGGGCCCGGCGCCCGGCCTaGGGGAACACCAGCCTTCGG +
Preference number: 5 (lower is better)
Translates to: LGGGNRLLHTDCTSQASGARRPA*GNTSLR
Trigger: CCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGC...CCCTGATGCCTGACTTGTACAGTCAGTGTGGAGTAGACGGTTTCCTCCACCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp GTTCTGGAAATTCTTTTCTCAGTCGGCCAGCAGGTGGAGCCCACTCTTCATGCCGCCCGGCGCCCGGCCTaGGGGAACACCAGCCTTCGG +
Preference number: 5 (lower is better)
Translates to: VLEILFSVGQQVEPTLHAARRPA*GNTSLR
Trigger: CCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGC...GGCATGAAGAGTGGGCTCCACCTGCTGGCCGACTGAGAAAAGAATTTCCAGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp GTCCCGGGGAGGAGGGTGTGTTCTGGGGCTGATCCCTCTGGACTTCTGGGACAATCTGCAGCGTCCCTGTaGGCTACAGCCAGGATGACC +
Preference number: 5 (lower is better)
Translates to: VPGRRVCSGADPSGLLGQSAASL*ATARMT
Trigger: GGTCATCCTGGCTGTAGCCAACAGGGACGCTGCAGA...TTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp GTCCCGGGGAGGAGGGTGTGTTCTGGGGCTGATCCCTCTGGACTTCTGGGACAAGAGCTCATGCTGCGCTaGATGCGGCCGAAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: VPGRRVCSGADPSGLLGQELMLR*MRPKLS
Trigger: TGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCTC...TTGTCCCAGAAGTCCAGAGGGATCAGCCCCAGAACACACCCTCCTCCCCGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp CCATGTAATCCTGTAACTGCTCCAAGCCCAGACTGCTGTGGTCGCTaGCGCTGCAGTGGGAGCCATGGAAAGAAGGTGTGGACGTGCCGC +
Preference number: 5 (lower is better)
Translates to: PCNPVTAPSPDCCGR*RCSGSHGKKVWTCR
Trigger: GCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGCAGTTACAGGATTACATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp AATCCCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGAGCTCATGCTGCGCTaGATGCGGCCGAAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: NPCGHPVRWMGAELTGQMELMLR*MRPKLS
Trigger: TGACAGCTTCGGCCGCATCAAGCGCAGCATGAGCTC...CATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp GGTCGCTGCCGCTGCAGTGGGAGCCATGGAAAGAAGGTGTGGACGTaGCGCTGTAACATGCTTCAAAGGTGTCCTGGGAGCCATTATGCG +
Preference number: 5 (lower is better)
Translates to: GRCRCSGSHGKKVWT*RCNMLQRCPGSHYA
Trigger: CGCATAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS GCA 90 bp AATCCTGTAACTGCTCCAAGCCCAGACTGCTGTGGTCGCTGCCGCTaGAGTGGGAGCCATGGAAAGAAGGTGTGGACGTGCCGCTGTAAC +
Preference number: 5 (lower is better)
Translates to: NPVTAPSPDCCGRCR*SGSHGKKVWTCRCN
Trigger: GTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGCAGTTACAGGATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 90 bp TGCTGTGGTCGCTGCCGCTGCAGTGGGAGCCATGGAAAGAAGGTGTaGACGTGCCGCTGTAACATGCTTCAAAGGTGTCCTGGGAGCCAT +
Preference number: 5 (lower is better)
Translates to: CCGRCRCSGSHGKKV*TCRCNMLQRCPGSH
Trigger: ATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 90 bp TGTGGCAGCTCTCACTGCGGCTGCAGAGCCATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAGCCCGGTCCACACACTCAATACTCT +
Preference number: 5 (lower is better)
Translates to: CGSSHCGCRAMAVQV*MCSGSQPGPHTQYS
Trigger: AGAGTATTGAGTGTGTGGACCGGGCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCAGTGAGAGCTGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS CCA 90 bp TCCTGGGAGCCATTATGCGGCTGCAGAGCCATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAGCCCGGTCCACACACTCAATACTCT +
Preference number: 5 (lower is better)
Translates to: SWEPLCGCRAMAVQV*MCSGSQPGPHTQYS
Trigger: AGAGTATTGAGTGTGTGGACCGGGCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCATAATGGCTCCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS GCA 90 bp GCAGTGGGAGCCATGGAAAGAAGGTGTGGACGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGAGCCATTATGCGGCTGCAGAGCCAT +
Preference number: 5 (lower is better)
Translates to: AVGAMERRCGRAAVT*FKGVLGAIMRLQSH
Trigger: ATGGCTCTGCAGCCGCATAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS-3UTR CAA 90 bp TTGATGCGGCCGAAGCTGTCAGTGAGGATGCCGCCCTCGCGGATGCCCACGCCCAAGGAACAACATTTATaGAGCTCTTATCGGGTGCTA +
Preference number: 5 (lower is better)
Translates to: LMRPKLSVRMPPSRMPTPKEQHL*SSYRVL
Trigger: TAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTT...GGGCGTGGGCATCCGCGAGGGCGGCATCCTCACTGACAGCTTCGGCCGCATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS GCA 90 bp AATACTCTGGTCCCCGTAGATGATCTGGAAGACCTGACAGATGAGTaGGCAGGACTCCTCTGCAGCGTCCCTGTTGGCTACAGCCAGGAT +
Preference number: 5 (lower is better)
Translates to: NTLVPVDDLEDLTDE*AGLLCSVPVGYSQD
Trigger: ATCCTGGCTGTAGCCAACAGGGACGCTGCAGAGGAGTCCTGCGCACTCATCTGTCAGGTCTTCCAGATCATCTACGGGGACCAGAGTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 90 bp GCAGTGGGAGCCATGGAAAGAAGGTGTGGACGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGAGCCATTAAAGGAGCTGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: AVGAMERRCGRAAVT*FKGVLGAIKGAAAA
Trigger: AGCTGCTGCAGCTCCTTTAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS-3UTR CAA 90 bp GTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAACCCCCGTCCTCTCTTCTaGAACCATAGTTTCTCAATC +
Preference number: 5 (lower is better)
Translates to: VATLLGGWGLSSLDRWGNPRPLF*NHSFSI
Trigger: GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGG...GTTACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp CCTGTGGCCACCCTGTTAGGTGGATGGGGGCTGAGCTCACTGGACAGATGGGGTAAGGAACAACATTTATaGAGCTCTTATCGGGTGCTA +
Preference number: 5 (lower is better)
Translates to: PVATLLGGWGLSSLDRWGKEQHL*SSYRVL
Trigger: TAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTT...ACCCCATCTGTCCAGTGAGCTCAGCCCCCATCCACCTAACAGGGTGGCCACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp GGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGGTCTGCAGCGTCCCTGTaGGCTACAGCCAGGATGACC +
Preference number: 5 (lower is better)
Translates to: GKEQHLLSSYRVLDPVLRSAASL*ATARMT
Trigger: GGTCATCCTGGCTGTAGCCAACAGGGACGCTGCAGA...CCTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp TTTAGAGCCTTAAAAAGACCTTCTACACTGTTTAGTATGGTCAGTTTGAGGTCAACACCCAGACCGGTCTaGAGCACTAGCAGGTGCAGC +
Preference number: 5 (lower is better)
Translates to: FRALKRPSTLFSMVSLRSTPRPV*STSRCS
Trigger: GCTGCACCTGCTAGTGCTCAAGACCGGTCTGGGTGT...TGACCTCAAACTGACCATACTAAACAGTGTAGAAGGTCTTTTTAAGGCTCTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS-3UTR CAA 90 bp TGGAAAGGAACAACATTTATTGAGCTCTTATCGGGTGCTAGACCCAGTTCTAAGCCCCGTCCTCTCTTCTaGAACCATAGTTTCTCAATC +
Preference number: 5 (lower is better)
Translates to: WKGTTFIELLSGARPSSKPRPLF*NHSFSI
Trigger: GATTGAGAAACTATGGTTCAAGAAGAGAGGACGGGG...CTTAGAACTGGGTCTAGCACCCGATAAGAGCTCAATAAATGTTGTTCCTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS TCA 72 bp CGCCGCCGCCTCCGTGCCGCCGCTCCCAGCTGCCGCTaGACGTCTGCCGTCGCTCCCAGCTGCCCGACGCCC +
Preference number: 6 (lower is better)
Translates to: RRRLRAAAPSCR*TSAVAPSCPTP
Trigger: GGGCGTCGGGCAGCTGGGAGCGACGGCAGACGTTCAGCGGCAGCTGGGAGCGGCGGCACGGAGGCGGCGGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp AGTCCAGGCTGCAGATGGTGTGGCGCCGCTCCGCGGTaGCCACCCGCCGCTTCTCGGGCGCCCCGCCTGGCG +
Preference number: 6 (lower is better)
Translates to: SPGCRWCGAAPR*PPAASRAPRLA
Trigger: CGCCAGGCGGGGCGCCCGAGAAGCGGCGGGTGGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp GTGCAGGGGCCGGCGGCTCACGCTGCTCCTACAGGCTaGCCGGCGCCCGGCCTTGGGGAACACCAGCCTTCG +
Preference number: 6 (lower is better)
Translates to: VQGPAAHAAPTG*PAPGLGEHQPS
Trigger: CGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCCGGCCCCTGCAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp CCCCACCCCATCCGCCAGTCCAGGCTGCAGATGGTGTaGCGCCGCTCCGCGGTGCCCACCCGCCGCTTCTCG +
Preference number: 6 (lower is better)
Translates to: PHPIRQSRLQMV*RRSAVPTRRFS
Trigger: CGAGAAGCGGCGGGTGGGCACCGCGGAGCGGCGCCACACCATCTGCAGCCTGGACTGGCGGATGGGGTGGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp GGGCAGACAGGCTCAGGATGCTGTCCTGCTCCGCCGTaGTCTTCAGCGGCAGCTCCTTCAGCTGCCTGGCGG +
Preference number: 6 (lower is better)
Translates to: GQTGSGCCPAPP*SSAAAPSAAWR
Trigger: CCGCCAGGCAGCTGAAGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp AGCAGGCAGCGGGCAGACAGGCTCAGGATGCTGTCCTaGTCCGCCGTGGTCTTCAGCGGCAGCTCCTTCAGC +
Preference number: 6 (lower is better)
Translates to: SRQRADRLRMLS*SAVVFSGSSFS
Trigger: GCTGAAGGAGCTGCCGCTGAAGACCACGGCGGAGCAGGACAGCATCCTGAGCCTGTCTGCCCGCTGCCTGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp TCACGCTGCTCCTACAGGCTGCCCGGCGCCCGGCCTTaGGGAACACCAGCCTTCGGATGGGGGATACAAAGC +
Preference number: 6 (lower is better)
Translates to: SRCSYRLPGARP*GTPAFGWGIQS
Trigger: GCTTTGTATCCCCCATCCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGCAGCCTGTAGGAGCAGCGTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp GGCAGCTCCTTCAGCTGCCTGGCGGTGTCTAGCAGCTaGAGGAGCTCGTCCCGACTGGAGGGGTTCAGTGAG +
Preference number: 6 (lower is better)
Translates to: GSSFSCLAVSSS*RSSSRLEGFSE
Trigger: CTCACTGAACCCCTCCAGTCGGGACGAGCTCCTGCAGCTGCTAGACACCGCCAGGCAGCTGAAGGAGCTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp CCCAGCCGGTACTCCCGCAGCAGCATCGCAAACTGCTaGATCTCGAGGGGCCCCAGCTTACTCCGCAACGTG +
Preference number: 6 (lower is better)
Translates to: PSRYSRSSIANC*ISRGPSLLRNV
Trigger: CACGTTGCGGAGTAAGCTGGGGCCCCTCGAGATCCAGCAGTTTGCGATGCTGCTGCGGGAGTACCGGCTGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CAA 90 bp GCGGCGGCGATCTCGTGCGTAGGGATTCGCAGAATGAGCTCTTCATaGTCGCGCCAGGTGAGCAGCAGGCAGCGGGCAGACAGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: AAAISCVGIRRMSSS*SRQVSSRQRADRLR
Trigger: CCTGAGCCTGTCTGCCCGCTGCCTGCTGCTCACCTGGCGCGACAATGAAGAGCTCATTCTGCGAATCCCTACGCACGAGATCGCCGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS TCA 72 bp ACTCCTCTGCAGCGTCCCTGTTGGCTACAGCCAGGATaGCCAGGTTGCAGTAGGCGTCGGGGCTGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: TPLQRPCWLQPG*PGCSRRRGWGP
Trigger: AGGACCCCAGCCCCGACGCCTACTGCAACCTGGTCATCCTGGCTGTAGCCAACAGGGACGCTGCAGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp ACTGCTCCAAGCCCAGACTGCTGTGGTCGCTGCCGCTaGAGTGGGAGCCATGGAAAGAAGGTGTGGACGTGC +
Preference number: 6 (lower is better)
Translates to: TAPSPDCCGRCR*SGSHGKKVWTC
Trigger: GCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp CCTGTAACTGCTCCAAGCCCAGACTGCTGTGGTCGCTaGCGCTGCAGTGGGAGCCATGGAAAGAAGGTGTGG +
Preference number: 6 (lower is better)
Translates to: PVTAPSPDCCGR*RCSGSHGKKVW
Trigger: CCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCTGGGCTTGGAGCAGTTACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp TCTCACTGCGGCTGCAGAGCCATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAGCCCGGTCCACACACT +
Preference number: 6 (lower is better)
Translates to: SHCGCRAMAVQV*MCSGSQPGPHT
Trigger: AGTGTGTGGACCGGGCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCAGTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS CCA 72 bp CCATTATGCGGCTGCAGAGCCATGGCCGTTCAGGTGTaGATGTGTAGTGGTAGCCAGCCCGGTCCACACACT +
Preference number: 6 (lower is better)
Translates to: PLCGCRAMAVQV*MCSGSQPGPHT
Trigger: AGTGTGTGGACCGGGCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCATAATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS CCA 72 bp AGGTGTCCTGGGAGCCATTATGCGGCTGCAGAGCCATaGCCGTTCAGGTGTGGATGTGTAGTGGTAGCCAGC +
Preference number: 6 (lower is better)
Translates to: RCPGSHYAAAEP*PFRCGCVVVAS
Trigger: GCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCATAATGGCTCCCAGGACACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS CCA 72 bp ATCTGTGTGGCAGCTCTCACTGCGGCTGCAGAGCCATaGCCGTTCAGGTGTGGATGTGTAGTGGTAGCCAGC +
Preference number: 6 (lower is better)
Translates to: ICVAALTAAAEP*PFRCGCVVVAS
Trigger: GCTGGCTACCACTACACATCCACACCTGAACGGCCATGGCTCTGCAGCCGCAGTGAGAGCTGCCACACAGAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3
CDS CAA 72 bp ATCTCGTGCGTAGGGATTCGCAGAATGAGCTCTTCATaGTCGCGCCAGGTGAGCAGCAGGCAGCGGGCAGAC +
Preference number: 6 (lower is better)
Translates to: ISCVGIRRMSSS*SRQVSSRQRAD
Trigger: GTCTGCCCGCTGCCTGCTGCTCACCTGGCGCGACAATGAAGAGCTCATTCTGCGAATCCCTACGCACGAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp GTCCCCGTAGATGATCTGGAAGACCTGACAGATGAGTaGGCAGGACTCCTCTGCAGCGTCCCTGTTGGCTAC +
Preference number: 6 (lower is better)
Translates to: VPVDDLEDLTDE*AGLLCSVPVGY
Trigger: GTAGCCAACAGGGACGCTGCAGAGGAGTCCTGCGCACTCATCTGTCAGGTCTTCCAGATCATCTACGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp CGCTGCAGTGGGAGCCATGGAAAGAAGGTGTGGACGTaGCGCTGTAACATGCTTCAAAGGTGTCCTGGGAGC +
Preference number: 6 (lower is better)
Translates to: RCSGSHGKKVWT*RCNMLQRCPGS
Trigger: GCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS CCA 72 bp CGCTGCCGCTGCAGTGGGAGCCATGGAAAGAAGGTGTaGACGTGCCGCTGTAACATGCTTCAAAGGTGTCCT +
Preference number: 6 (lower is better)
Translates to: RCRCSGSHGKKV*TCRCNMLQRCP
Trigger: AGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGCTCCCACTGCAGCGGCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000262659.12
ENST00000452892.3
CDS GCA 72 bp GCCATGGAAAGAAGGTGTGGACGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGAGCCATTATGCGGCTG +
Preference number: 6 (lower is better)
Translates to: AMERRCGRAAVT*FKGVLGAIMRL
Trigger: CAGCCGCATAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000262659.12
CDS GCA 72 bp GCCATGGAAAGAAGGTGTGGACGTGCCGCTGTAACATaGTTCAAAGGTGTCCTGGGAGCCATTAAAGGAGCT +
Preference number: 6 (lower is better)
Translates to: AMERRCGRAAVT*FKGVLGAIKGA
Trigger: AGCTCCTTTAATGGCTCCCAGGACACCTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCCATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000452892.3