Pregenerated sensors for CCL20 (Homo sapiens)
Ensembl gene IDs: ENSG00000115009Ensembl transcript IDs: ENST00000358813.5, ENST00000409189.7, ENST00000473642.1, ENST00000489160.1, ENST00000646475.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTGTTGCTTGCTGCTTCTaGTTCGCCGCAGAGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVVACCF*FAAEVE Trigger: CTCCACCTCTGCGGCGAATCAGAAGCAGCAAGCAAC...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358813.5 |
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| CDS-3UTR CCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTGATTCGCCGCAGAGGTaGAGTAGCAGCACTGACATC | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVDSPQR*SSSTDI Trigger: GATGTCAGTGCTGCTACTCCACCTCTGCGGCGAATC...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR TCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAAAGTTGCTTGCTTCTaGTTCGCCGCAGAGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVKVACF*FAAEVE Trigger: CTCCACCTCTGCGGCGAATCAGAAGCAAGCAACTTT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409189.7 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTCCTTCATTGGCCAGCTaGCGTGTGAAGCCCACAATA | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVPSLAS*RVKPTI Trigger: TATTGTGGGCTTCACACGGCAGCTGGCCAATGAAGG...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTGACAGCAGTCAAAGTTaGTTGCTTCTGATTCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVDSSQS*LLLIRR Trigger: GCGGCGAATCAGAAGCAAGCAACTTTGACTGCTGTC...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409189.7 |
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| CDS-3UTR TCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAGATCTGCTCAGTGTTaGGTACCCAGTTCTTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVRSAQC*VPSSLG Trigger: TCCCAAAGAACTGGGTACTCAACACTGAGCAGATCT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTGACAGCAGTCAAAGTTaGTTGCTGCTTCTGATTCGC | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVDSSQS*LLLLIR Trigger: GCGAATCAGAAGCAGCAAGCAACTTTGACTGCTGTC...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358813.5 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTCTCAAAGAACAGATCTaGTCAGTGTTGAGTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVLKEQI*SVLSTQ Trigger: CTGGGTACTCAACACTGAGCAGATCTGTTCTTTGAG...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTCACCCAAGTCTGTTTTaGATTTGCGCACACAGACAA | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVHPSLF*ICAHRQ Trigger: TTGTCTGTGTGCGCAAATCCAAAACAGACTTGGGTG...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTCCAGGAGCAAACTCTTaGTACAGCACATGGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVPGANS*YSTWFL Trigger: TAAAAACCATGTGCTGTACCAAGAGTTTGCTCCTGG...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTATCAACTTCATTAATTaGACAAGTCCAGTGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVINFIN*TSPVRH Trigger: GTGCCTCACTGGACTTGTCCAATTAATGAAGTTGAT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAGTCTGTTTTGGATTTaGGCACACAGACAACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: RFFLFLGYVQFHSRKATVSLFWI*AHRQLF Trigger: AAAAAGTTGTCTGTGTGCGCAAATCCAAAACAGACT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS GCA 90 bp | CAAAGAACAGATCTGCTCAGTGTTGAGTACCCAGTTCTTTGGGAGTaGTGTTATATTCTGACAGCAGCCTGGGATGGCCCTGTAAATTCC | + |
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Preference number: 5 (lower is better) Translates to: QRTDLLSVEYPVLWE*CYILTAAWDGPVNS Trigger: GGAATTTACAGGGCCATCCCAGGCTGCTGTCAGAATATAACAGCACTCCCAAAGAACTGGGTACTCAACACTGAGCAGATCTGTTCTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646475.1 |
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| CDS CCA 90 bp | GGTGGAGTAGCAGCACTGACATCAAAGCAGCCAGGAGCAAACTCTTaGTACAGCACATGGTTTTTAGCTCAAAGAACAGATCTGCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: GGVAALTSKQPGANS*YSTWFLAQRTDLLS Trigger: ACTGAGCAGATCTGTTCTTTGAGCTAAAAACCATGTGCTGTACCAAGAGTTTGCTCCTGGCTGCTTTGATGTCAGTGCTGCTACTCCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000358813.5 ENST00000409189.7 ENST00000489160.1 ENST00000646475.1 |
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| CDS CCA 90 bp | TTAGCTCAAAGAACAGATCTGCTCAGTGTTGAGTACCCAGTTCTTTaGGAGTGCTGTTATATTCTGACAGCAGCCTGGGATGGCCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: LAQRTDLLSVEYPVL*ECCYILTAAWDGPV Trigger: TACAGGGCCATCCCAGGCTGCTGTCAGAATATAACAGCACTCCCAAAGAACTGGGTACTCAACACTGAGCAGATCTGTTCTTTGAGCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646475.1 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTATGTCACAGCCTTCATaGGCCAGCTGCCGTGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVMSQPS*ASCRVK Trigger: CTTCACACGGCAGCTGGCCAATGAAGGCTGTGACAT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAGCAGTCAAAGTTGCTaGCTGCTTCTGATTCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVSSQSC*LLLIRR Trigger: GCGGCGAATCAGAAGCAGCAAGCAACTTTGACTGCT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358813.5 |
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| CDS TCA 90 bp | CCTTCATTGGCCAGCTGCCGTGTGAAGCCCACAATAAATTTAGGATaGAGAATACGGTCTGTGTATCCAAGACAGCAGTCAAAGTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: PSLASCRVKPTINLG*RIRSVYPRQQSKLL Trigger: AAGCAACTTTGACTGCTGTCTTGGATACACAGACCGTATTCTTCATCCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAATGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000358813.5 ENST00000409189.7 ENST00000473642.1 ENST00000489160.1 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTCAGATCTGCTCAGTGTaGAGTACCCAGTTCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVQICSV*STQFFG Trigger: CCCAAAGAACTGGGTACTCAACACTGAGCAGATCTG...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS TCA 90 bp | GTACAGCACATGGTTTTTAGCTCAAAGAACAGATCTGCTCAGTGTTaGGTACCCAGTTCTTTGGGAGTGCTGTTATATTCTGACAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: VQHMVFSSKNRSAQC*VPSSLGVLLYSDSS Trigger: GCTGCTGTCAGAATATAACAGCACTCCCAAAGAACTGGGTACTCAACACTGAGCAGATCTGTTCTTTGAGCTAAAAACCATGTGCTGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000646475.1 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTGCCAGGAGCAAACTCTaGGTACAGCACATGGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVARSKL*VQHMVF Trigger: AAAAACCATGTGCTGTACCAAGAGTTTGCTCCTGGC...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAGACAGCAGTCAAAGTaGCTTGCTGCTTCTGATTCG | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVRQQSK*LAASDS Trigger: CGAATCAGAAGCAGCAAGCAACTTTGACTGCTGTCT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358813.5 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTTCACCCAAGTCTGTTTaGGATTTGCGCACACAGACA | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVSPKSV*DLRTQT Trigger: TGTCTGTGTGCGCAAATCCAAAACAGACTTGGGTGA...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAGGTTCTTTCTGTTCTaGGGCTATGTCCAATTCCAT | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVRFFLF*GYVQFH Trigger: ATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS-3UTR CAA 90 bp | AGGTTCTTTCTGTTCTTGGGCTATGTCCAATTCCATTCCAGAAAAGCCACAGTTAAGTCTGTTTTGGATTaGCGCACACAGACAACTTTT | + |
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Preference number: 5 (lower is better) Translates to: RFFLFLGYVQFHSRKATVKSVLD*RTQTTF Trigger: AAAAGTTGTCTGTGTGCGCAAATCCAAAACAGACTT...AACTGTGGCTTTTCTGGAATGGAATTGGACATAGCCCAAGAACAGAAAGAACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000358813.5 ENST00000409189.7 |
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| CDS GCA 90 bp | ACTGAGGAGACGCACAATATATTTCACCCAAGTCTGTTTTGGATTTaGGCACACAGACAACTTTTTCTTTGTGTGAAAGATGATAGCATT | + |
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Preference number: 5 (lower is better) Translates to: TEETHNIFHPSLFWI*AHRQLFLCVKDDSI Trigger: AATGCTATCATCTTTCACACAAAGAAAAAGTTGTCTGTGTGCGCAAATCCAAAACAGACTTGGGTGAAATATATTGTGCGTCTCCTCAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000358813.5 ENST00000409189.7 ENST00000473642.1 |
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| CDS CCA 72 bp | TCAAAGTTGCTTGCTGCTTCTGATTCGCCGCAGAGGTaGAGTAGCAGCACTGACATCAAAGCAGCCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SKLLAASDSPQR*SSSTDIKAARS Trigger: GCTCCTGGCTGCTTTGATGTCAGTGCTGCTACTCCACCTCTGCGGCGAATCAGAAGCAGCAAGCAACTTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358813.5 |
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| CDS CCA 72 bp | CAGTCAAAGTTGCTTGCTTCTGATTCGCCGCAGAGGTaGAGTAGCAGCACTGACATCAAAGCAGCCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: QSKLLASDSPQR*SSSTDIKAARS Trigger: GCTCCTGGCTGCTTTGATGTCAGTGCTGCTACTCCACCTCTGCGGCGAATCAGAAGCAAGCAACTTTGACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000409189.7 ENST00000489160.1 |
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| CDS GCA 72 bp | GATCTGCTCAGTGTTGAGTACCCAGTTCTTTGGGAGTaGTGTTATATTCTGACAGCAGCCTGGGATGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: DLLSVEYPVLWE*CYILTAAWDGP Trigger: AGGGCCATCCCAGGCTGCTGTCAGAATATAACAGCACTCCCAAAGAACTGGGTACTCAACACTGAGCAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646475.1 |
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| CDS CCA 72 bp | TTGGGAGTGCTGTTATATTCTGACAGCAGCCTGGGATaGCCCTGTAAATTCCAGGCACTGTATGAAAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: LGVLLYSDSSLG*PCKFQALYEKA Trigger: TGCTTTTTCATACAGTGCCTGGAATTTACAGGGCCATCCCAGGCTGCTGTCAGAATATAACAGCACTCCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000646475.1 |
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| CDS CCA 72 bp | GCAGCACTGACATCAAAGCAGCCAGGAGCAAACTCTTaGTACAGCACATGGTTTTTAGCTCAAAGAACAGAT | + |
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Preference number: 6 (lower is better) Translates to: AALTSKQPGANS*YSTWFLAQRTD Trigger: ATCTGTTCTTTGAGCTAAAAACCATGTGCTGTACCAAGAGTTTGCTCCTGGCTGCTTTGATGTCAGTGCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000358813.5 ENST00000409189.7 ENST00000489160.1 ENST00000646475.1 |
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| CDS TCA 72 bp | ATGGTTTTTAGCTCAAAGAACAGATCTGCTCAGTGTTaGGTACCCAGTTCTTTGGGAGTGCTGTTATATTCT | + |
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Preference number: 6 (lower is better) Translates to: MVFSSKNRSAQC*VPSSLGVLLYS Trigger: AGAATATAACAGCACTCCCAAAGAACTGGGTACTCAACACTGAGCAGATCTGTTCTTTGAGCTAAAAACCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000358813.5 ENST00000409189.7 ENST00000646475.1 |
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