Pregenerated sensors for CCL2 (Homo sapiens)
Ensembl gene IDs: ENSG00000108691Ensembl transcript IDs: ENST00000225831.4, ENST00000580907.5, ENST00000624362.1
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCATGGGAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGATGAGGCTTGTCCCTTaGTCCACAAGGAAGAACTTC | + |
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Preference number: 2 (lower is better) Translates to: PWELEEERRWKEGTQGKLMRLVP*STRKNF Trigger: GAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCAT...CAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTCCCATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGAGGAGGAACGCAGGTaGAAGGAGGGAACCCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: TELDEVPLQFWSRSAAHSEEERR*KEGTQG Trigger: GCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTC...AGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGAAATTGGGGTGTTCTaGATAGGCACCCAGGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: TELDEVPLQFWSRSAAHSEIGVF*IGTQVE Trigger: CTCCACCTGGGTGCCTATTCAGAACACCCCAATTTC...AGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| 3UTR CAA 90 bp | GGTTCACTTTTTCCCTTGGTGCCTCAGTTTTCCCATTGGGAACCTTaGTACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATG | + |
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Preference number: 2 (lower is better) Translates to: GSLFPLVPQFSHWEP*YIKLNSALSDSRFM Trigger: CATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTACAAAGGTTCCCAATGGGAAAACTGAGGCACCAAGGGAAAAAGTGAACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| 3UTR GCA 72 bp | GCACTCTCTGACTCTAGGTTTATGAGGCTTGTCCCTTaGTCCACAAGGAAGAACTTCAGGCCAGGGAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: ALSDSRFMRLVP*STRKNFRPGKV Trigger: AACCTTCCCTGGCCTGAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATAAACCTAGAGTCAGAGAGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | GAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGCTCCTAGAGGAGGAACGCAGGTaGAAGGAGGGAACCCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: ELEEERRWKEGTQGKLLLEEERR*KEGTQG Trigger: GCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTC...TAGGAGCAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | CCATGGGAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGCAGAGACTTTCATGCTaGAGGCGAGAGTGCGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PWELEEERRWKEGTQGKLQRLSC*RRECEL Trigger: AAGCTCGCACTCTCGCCTCCAGCATGAAAGTCTCTG...CAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTCCCATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | CCATGGGAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGGACACTTGCTGCTGGTaGTTCTTCTATAGCTCGCGA | + |
|
Preference number: 4 (lower is better) Translates to: PWELEEERRWKEGTQGKLDTCCW*FFYSSR Trigger: TCGCGAGCTATAGAAGAATCACCAGCAGCAAGTGTC...CAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTCCCATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR GCA 90 bp | CCATGGGAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGTGCTGGAGGCGAGAGTaGGAGCTTCAGTTTGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: PWELEEERRWKEGTQGKLCWRRE*ELQFEN Trigger: ATTCTCAAACTGAAGCTCGCACTCTCGCCTCCAGCA...CAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTCCCATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR GCA 90 bp | GAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGCTCCTAGAACCCAGGGCAAACTaGTCCTATAGGTGTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: ELEEERRWKEGTQGKLLLEPRAN*SYRCPG Trigger: ACCTGGACACCTATAGGAGCAGTTTGCCCTGGGTTC...TAGGAGCAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | GTTTATGAGGCTTGTCCCTTGCTCCACAAGGAAGAACTTCAGGCCAGGGAAGGTGGCATTGATTGCATCTaGCTGAGCGAGCCCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: VYEACPLLHKEELQAREGGIDCI*LSEPLG Trigger: CCCCAAGGGCTCGCTCAGCCAGATGCAATCAATGCC...ACCTTCCCTGGCCTGAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR GCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACGGCAGAGACTTTCATaGTGGAGGCGAGAGTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKRQRLS*WRRECE Trigger: CTCGCACTCTCGCCTCCAGCATGAAAGTCTCTGCCG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR GCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAGACTGGGGCATTGATTaGATCTGGCTGAGCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKDWGID*IWLSEP Trigger: GGGCTCGCTCAGCCAGATGCAATCAATGCCCCAGTC...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAGGCATTGATTGCATCTaGCTGAGCGAGCCCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKGIDCI*LSEPLG Trigger: CCCCAAGGGCTCGCTCAGCCAGATGCAATCAATGCC...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR TCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATTGATTGCATCTGGCTaGGCGAGCCCTTGGGGAATG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKLIASG*ASPWGM Trigger: CATTCCCCAAGGGCTCGCTCAGCCAGATGCAATCAA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR GCA 90 bp | GAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACGGCAGAGACTTTCATaGTGGAGGCGAGAGTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: ELDEVPLQFWSRSAAHSARQRLS*WRRECE Trigger: CTCGCACTCTCGCCTCCAGCATGAAAGTCTCTGCCG...TGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | TTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACCAACCAAAGGGCTGCCATaGGAGCTAGAGGAGGAACGC | + |
|
Preference number: 4 (lower is better) Translates to: LDEVPLQFWSRSAAHSAPTKGLP*ELEEER Trigger: GCGTTCCTCCTCTAGCTCCCATGGCAGCCCTTTGGT...TGGTGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | GCACCCAGGTGGAGAGTGATGTTGGGGTTCACTTTTTCCCTTGGTGCCTCAGTTGTTCCTTTGCAGTTTTaGTCTAGAAGTGCAGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: APRWRVMLGFTFSLGASVVPLQF*SRSAAH Trigger: ATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAAC...AACTGAGGCACCAAGGGAAAAAGTGAACCCCAACATCACTCTCCACCTGGGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| 3UTR CAA 72 bp | CTGTGGGGAGGGAGGACAGAGTTAGATGAAGTTCCTTaGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LWGGRTELDEVP*QFWSRSAAHSA Trigger: TGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGTCCTCCCTCCCCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | GACTCTAGGTTTATGAGGCTTGTCCCTTGCTCCACAAGGAAGAACTTCAGGCCAGTGCGAGCTTCAGTTTaGGAATTGGATGTTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: DSRFMRLVPCSTRKNFRPVRASV*ELDVSG Trigger: CCCAGAAACATCCAATTCTCAAACTGAAGCTCGCAC...TGGCCTGAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATAAACCTAGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACGCGAGCCTCTGCACTaGGATCTTCCTATTGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKREPLH*DLPIGE Trigger: TTCACCAATAGGAAGATCTCAGTGCAGAGGCTCGCG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR GCA 90 bp | TTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACCAAAGTGCAGCCCATTCTaGACCAAAGGGCTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: LDEVPLQFWSRSAAHSAPKCSPF*TKGLPW Trigger: CCATGGCAGCCCTTTGGTGCAGAATGGGCTGCACTT...TGGTGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACAGAGACTTTCATGCTaGAGGCGAGAGTGCGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKQRLSC*RRECEL Trigger: AAGCTCGCACTCTCGCCTCCAGCATGAAAGTCTCTG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR TCA 90 bp | ACAGAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTTTGATTGCATCTGGCTaGGCGAGCCCTTGGGGAATG | + |
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Preference number: 4 (lower is better) Translates to: TELDEVPLQFWSRSAAHSLIASG*ASPWGM Trigger: CATTCCCCAAGGGCTCGCTCAGCCAGATGCAATCAA...AGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAGACACTTGCTGCTGGTaGTTCTTCTATAGCTCGCGA | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKDTCCW*FFYSSR Trigger: TCGCGAGCTATAGAAGAATCACCAGCAGCAAGTGTC...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR TCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATCTTGGGTTGTGGAGTaGGTGTTCAAGTCTTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKSWVVE*VFKSSE Trigger: CTCCGAAGACTTGAACACTCACTCCACAACCCAAGA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR GCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATGCTGGAGGCGAGAGTaGGAGCTTCAGTTTGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKCWRRE*ELQFEN Trigger: ATTCTCAAACTGAAGCTCGCACTCTCGCCTCCAGCA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATGTCCAGGTGGTCCATaGAATCCTGAACCCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKCPGGP*NPEPTS Trigger: AGAAGTGGGTTCAGGATTCCATGGACCACCTGGACA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR TCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAGTGCGAGCTTCAGTTTaGGAATTGGATGTTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKVRASV*ELDVSG Trigger: CCCAGAAACATCCAATTCTCAAACTGAAGCTCGCAC...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR TCA 90 bp | GAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCAGGAAGGTTGGTGTGCTaGACTCACATCACAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: ELDEVPLQFWSRSAAHSAGRLVC*THITAS Trigger: AGAAGCTGTGATGTGAGTTCAGCACACCAACCTTCC...TGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAATAACAGCAGGTGACTaGGGCATTGATTGCATCTGG | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKITAGD*GIDCIW Trigger: CCAGATGCAATCAATGCCCCAGTCACCTGCTGTTAT...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CCA 90 bp | TTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACCATGTCCAGGTGGTCCATaGAATCCTGAACCCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: LDEVPLQFWSRSAAHSAPCPGGP*NPEPTS Trigger: AGAAGTGGGTTCAGGATTCCATGGACCACCTGGACA...TGGTGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | ACAGAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTCACCCAGGTGGAGAGTaGTGTTGGGGTTCACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: TELDEVPLQFWSRSAAHSHPGGE*CWGSLF Trigger: AAAAAGTGAACCCCAACATCACTCTCCACCTGGGTG...AGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR GCA 90 bp | TTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACCAATGAGGCTTGTCCCTTaGTCCACAAGGAAGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LDEVPLQFWSRSAAHSAPMRLVP*STRKNF Trigger: GAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCAT...TGGTGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR GCA 90 bp | TTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTGCACCACACTTTTTCCCTTGGTaGCTCAGTTTTCCCATTGGG | + |
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Preference number: 4 (lower is better) Translates to: LDEVPLQFWSRSAAHSAPHFFPW*LSFPIG Trigger: CCCAATGGGAAAACTGAGGCACCAAGGGAAAAAGTG...TGGTGCAGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACCAGGGGTAGAACTGTaGTTCAAGAGGAAAAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKPGVEL*FKRKSN Trigger: ATTGCTTTTCCTCTTGAACCACAGTTCTACCCCTGG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CCA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACAGATTCTTGGGTTGTaGAGTGAGTGTTCAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SCKDPQNIPGVELWFKRKQILGL*SECSSL Trigger: AAGACTTGAACACTCACTCCACAACCCAAGAATCTG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CCA 90 bp | TACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATGAGGCTTGTCCCTCAGGCCAGGGAAGGTTaGTGTGCTGAACTCACATCA | + |
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Preference number: 4 (lower is better) Translates to: YIKLNSALSDSRFMRLVPQAREG*CAELTS Trigger: TGATGTGAGTTCAGCACACCAACCTTCCCTGGCCTG...AGGGACAAGCCTCATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | CCTTTGTACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATGAGGCTTCTGACTCTAGGTTTATaGGGCTTGTCCCTTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PLYIKLNSALSDSRFMRLLTLGL*GLSLAP Trigger: TGGAGCAAGGGACAAGCCTCATAAACCTAGAGTCAG...AAGCCTCATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTACAAAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | CCTTTGTACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATGAGGCTTCAGGTGGAGCCATCCTaGCTTCAAGCTAAAGAAATT | + |
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Preference number: 4 (lower is better) Translates to: PLYIKLNSALSDSRFMRLQVEPS*LQAKEI Trigger: AATTTCTTTAGCTTGAAGTCAGGATGGCTCCACCTG...AAGCCTCATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTACAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR TCA 90 bp | CCTTTGTACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATGAGGCTTGAGGACAGAGTTAGATaGAGTTCCTTTGCAGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: PLYIKLNSALSDSRFMRLEDRVR*SSFAVL Trigger: CAAAACTGCAAAGGAACTTCATCTAACTCTGTCCTC...AAGCCTCATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTACAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS CCA 90 bp | CCCAGAGCTGGAATCCTGGAAGGAGCTGGATTTGGGGTTCACAGCTaGAATTCTAGTTCAGGCTCTGCCGAGCAGCAGCTGTGTGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: PRAGILEGAGFGVHS*NSSSGSAEQQLCGW Trigger: CCAACCACACAGCTGCTGCTCGGCAGAGCCTGAACTAGAATTCCAGCTGTGAACCCCAAATCCAGCTCCTTCCAGGATTCCAGCTCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS-3UTR CAA 90 bp | GAGCTAGAGGAGGAACGCAGGTGGAAGGAGGGAACCCAGGGCAAACTGCTCCTAAGGTGGAGAGTGATGTaGGGGTTCACTTTTTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: ELEEERRWKEGTQGKLLLRWRVM*GFTFSL Trigger: AAGGGAAAAAGTGAACCCCAACATCACTCTCCACCT...TAGGAGCAGTTTGCCCTGGGTTCCCTCCTTCCACCTGCGTTCCTCCTCTAGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CAA 90 bp | GTTTATGAGGCTTGTCCCTTGCTCCACAAGGAAGAACTTCAGGCCAGGGAAGGTTTGGCCACAATGGTCTaGAAGCTGTGGGGAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: VYEACPLLHKEELQAREGLATMV*KLWGGR Trigger: CCTCCCTCCCCACAGCTTCAAGACCATTGTGGCCAA...ACCTTCCCTGGCCTGAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CAA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATGGCTGAGCGAGCCCTaGGGGAATGAAGGTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SCKDPQNIPGVELWFKRKWLSEP*GNEGGC Trigger: GCAGCCACCTTCATTCCCCAAGGGCTCGCTCAGCCA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS CCA 90 bp | AGCTGGAATTCTAGTTCAGGCTCTGCCGAGCAGCAGCTGTGTGGTTaGGCTCACCCCTTGTCCTTTTCTGAGTCACCTTATCTTGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: SWNSSSGSAEQQLCG*AHPLSFSESPYLGK Trigger: TTTTCCAAGATAAGGTGACTCAGAAAAGGACAAGGGGTGAGCCCAACCACACAGCTGCTGCTCGGCAGAGCCTGAACTAGAATTCCAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS-3UTR CAA 90 bp | ACAGAGTTAGATGAAGTTCCTTTGCAGTTTTGGTCTAGAAGTGCAGCCCATTCTTGGCTGAGCGAGCCCTaGGGGAATGAAGGTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: TELDEVPLQFWSRSAAHSWLSEP*GNEGGC Trigger: GCAGCCACCTTCATTCCCCAAGGGCTCGCTCAGCCA...AGAATGGGCTGCACTTCTAGACCAAAACTGCAAAGGAACTTCATCTAACTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CAA 90 bp | GACTCTAGGTTTATGAGGCTTGTCCCTTGCTCCACAAGGAAGAACTTCAGGCCATATGAGGCTTGTCCCTaGCTCCACAAGGAAGAACTT | + |
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Preference number: 5 (lower is better) Translates to: DSRFMRLVPCSTRKNFRPYEACP*LHKEEL Trigger: AAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATA...TGGCCTGAAGTTCTTCCTTGTGGAGCAAGGGACAAGCCTCATAAACCTAGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS-3UTR CAA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAACTGCAGATTCTTGGGTaGTGGAGTGAGTGTTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: SCKDPQNIPGVELWFKRKLQILG*WSECSS Trigger: ACTTGAACACTCACTCCACAACCCAAGAATCTGCAG...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CAA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAGTTAGCTGCAGATTCTaGGGTTGTGGAGTGAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: SCKDPQNIPGVELWFKRKVSCRF*GCGVSV Trigger: AACACTCACTCCACAACCCAAGAATCTGCAGCTAAC...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CAA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAAAGTGCGAGCTTCAGTTaGAGAATTGGATGTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SCKDPQNIPGVELWFKRKSASFS*RIGCFW Trigger: CCAGAAACATCCAATTCTCAAACTGAAGCTCGCACT...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS-3UTR CAA 90 bp | TCTTGCAAAGACCCTCAAAACATCCCAGGGGTAGAACTGTGGTTCAAGAGGAAATTGGCCACAATGGTCTaGAAGATCACAGCTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SCKDPQNIPGVELWFKRKLATMV*KITASL Trigger: CAAAGAAGCTGTGATCTTCAAGACCATTGTGGCCAA...TTTCCTCTTGAACCACAGTTCTACCCCTGGGATGTTTTGAGGGTCTTTGCAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000225831.4 |
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| CDS TCA 90 bp | AATCCCAGTGCTTCTGCCTATACCTCAGAGCTAGAATGTGATCTTTaGCCCAATGACTCAGTTTCCTATGCTGTAAAATGGGTATATAAC | + |
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Preference number: 5 (lower is better) Translates to: NPSASAYTSELECDL*PNDSVSYAVKWVYN Trigger: GTTATATACCCATTTTACAGCATAGGAAACTGAGTCATTGGGTCAAAGATCACATTCTAGCTCTGAGGTATAGGCAGAAGCACTGGGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS-3UTR CAA 90 bp | CCTTTGTACATTAAGTTAAATAGTGCACTCTCTGACTCTAGGTTTATGAGGCTTAGTGCGAGCTTCAGTTaGAGAATTGGATGTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PLYIKLNSALSDSRFMRLSASFS*RIGCFW Trigger: CCAGAAACATCCAATTCTCAAACTGAAGCTCGCACT...AAGCCTCATAAACCTAGAGTCAGAGAGTGCACTATTTAACTTAATGTACAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580907.5 |
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| CDS CCA 72 bp | GGAATCCTGGAAGGAGCTGGATTTGGGGTTCACAGCTaGAATTCTAGTTCAGGCTCTGCCGAGCAGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GILEGAGFGVHS*NSSSGSAEQQL Trigger: CAGCTGCTGCTCGGCAGAGCCTGAACTAGAATTCCAGCTGTGAACCCCAAATCCAGCTCCTTCCAGGATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS CCA 72 bp | TCTAGTTCAGGCTCTGCCGAGCAGCAGCTGTGTGGTTaGGCTCACCCCTTGTCCTTTTCTGAGTCACCTTAT | + |
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Preference number: 6 (lower is better) Translates to: SSSGSAEQQLCG*AHPLSFSESPY Trigger: ATAAGGTGACTCAGAAAAGGACAAGGGGTGAGCCCAACCACACAGCTGCTGCTCGGCAGAGCCTGAACTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS CAA 72 bp | GTGTTCCCAGAGCTGGAATCCTGGAAGGAGCTGGATTaGGGGTTCACAGCTGGAATTCTAGTTCAGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VFPELESWKELD*GFTAGILVQAL Trigger: CAGAGCCTGAACTAGAATTCCAGCTGTGAACCCCAAATCCAGCTCCTTCCAGGATTCCAGCTCTGGGAACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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| CDS CCA 72 bp | ACCTTATCTTGGAAAAGTAGCGTTAAAGCAAGACTGTaGGTACCACGTCTGCTTGGATGGTCCATGATAACT | + |
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Preference number: 6 (lower is better) Translates to: TLSWKSSVKARL*VPRLLGWSMIT Trigger: AGTTATCATGGACCATCCAAGCAGACGTGGTACCCACAGTCTTGCTTTAACGCTACTTTTCCAAGATAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624362.1 |
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