Pregenerated sensors for CCL19 (Homo sapiens)
Ensembl gene IDs: ENSG00000172724Ensembl transcript IDs: ENST00000311925.7, ENST00000378800.3, ENST00000485502.1
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACTCTaGCCACACTCACCCTCTCGCTCACACTCACACTCACACACACCC | + |
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Preference number: 1 (lower is better) Translates to: ALLVALQSGGGAALL*PHSPSRSHSHSHTP Trigger: GGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGAGTGTGGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| 3UTR-3UTR CAA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGAATAATTCACAATGCTaGACTCGGACTCCGGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: SPSRSHSHSHTPQALSWLNNSQC*TRTPGS Trigger: GGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATT...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| 3UTR GCA 72 bp | GGTCCTCGGTTCCCCAGGTTAGGTAATAATTCACAATaGTTGACTCGGACTCCGGGCTCCCTCTGCACGGTC | + |
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Preference number: 3 (lower is better) Translates to: GPRFPRLGNNSQ*LTRTPGSLCTV Trigger: GACCGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAACCGAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| 3UTR CCA 72 bp | CCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTaGAGCAGCTTTACTCTGACCACACTCACCCTCTCG | + |
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Preference number: 3 (lower is better) Translates to: PGGFIGSIAIWG*SSFTLTTLTLS Trigger: CGAGAGGGTGAGTGTGGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGCCAACGGTGAATGTGTaGGCGCCAGCTGTCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SPSRSHSHSHTPQALSWLPTVNV*APAVWV Trigger: CACCCAGACAGCTGGCGCTCACACATTCACCGTTGG...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGGGAGCAGCTTTACTCTaGCCACACTCACCCTCTCGC | + |
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Preference number: 4 (lower is better) Translates to: SPSRSHSHSHTPQALSWLGAALL*PHSPSR Trigger: GCGAGAGGGTGAGTGTGGTCAGAGTAAAGCTGCTCC...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGCTGGTGCAGAGGAGCTaGAAGCCTGGTCCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: SPSRSHSHSHTPQALSWLLVQRS*KPGPSF Trigger: GAAGGAAGGACCAGGCTTCCAGCTCCTCTGCACCAG...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | TTCCCCAGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCGGGCTGGTCTGGGGGTaGACAGAGCTGGCGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: FPRLGNNSQCLTRTPGSLGLVWG*TELAAP Trigger: AGGGGCCGCCAGCTCTGTGCACCCCCAGACCAGCCC...GAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGGGGGGTGCACAGAGCTaGCGGCCCCTCAGTGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTGGAQS*RPLSVV Trigger: CACCACACTGAGGGGCCGCCAGCTCTGTGCACCCCC...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGGTCCTCTGCAGTCTCTaGATGATGCGTTCTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPSRSHSHSHTPQALSWLVLCSL*MMRSTQ Trigger: CTGGGTAGAACGCATCATCCAGAGACTGCAGAGGAC...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | GGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACTCTGACCTGTGCAGGATCTGTGTaGGGCTGCAGGGCGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: GGFIGSIAIWGWSSFTLTCAGSV*GCRATG Trigger: CCCAGTCGCCCTGCAGCCTCACACAGATCCTGCACA...GGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | TGTAAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTCAGGGCCATGGAGGGTaGACAGAGGCAGGCCAACGG | + |
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Preference number: 4 (lower is better) Translates to: CKHQAALLVALQSGGGAAQGHGG*TEAGQR Trigger: CCGTTGGCCTGCCTCTGTTCACCCTCCATGGCCCTG...AGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTTACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | CCTCGGTTCCCCAGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCAGAGAACCAGCAGGCTaGGGGCCAGTAGCAGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: PRFPRLGNNSQCLTRTPGREPAG*GPVAGP Trigger: TGGCCCTGCTACTGGCCCTCAGCCTGCTGGTTCTCT...GCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAACCGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGTACCCAGGGCTGGTCTaGGGGTGCACAGAGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTYPGLV*GCTELA Trigger: CGCCAGCTCTGTGCACCCCCAGACCAGCCCTGGGTA...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGGAGGCAGGCCAACGGTaGATGTGTGAGCGCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTEAGQR*MCERQL Trigger: CAGCTGGCGCTCACACATTCACCGTTGGCCTGCCTC...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | TCACCCTCTCGCTCACACTCACACTCACACACACCCCAGGCCCTGTCCTGGCTGGGTAATAATTCACAATaGTTGACTCGGACTCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: SPSRSHSHSHTPQALSWLGNNSQ*LTRTPG Trigger: GCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACC...CAGCCAGGACAGGGCCTGGGGTGTGTGTGAGTGTGAGTGTGAGCGAGAGGGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | CCTCGGTTCCCCAGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCGCTGGTCAGGTCTGGTaGAGAGGAGCTGGAAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: PRFPRLGNNSQCLTRTPGAGQVW*RGAGSL Trigger: CAGGCTTCCAGCTCCTCTGCACCAGACCTGACCAGC...GCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAACCGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGCGTTCTACCCAGGGCTaGTCTGGGGGTGCACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTRSTQG*SGGAQS Trigger: GCTCTGTGCACCCCCAGACCAGCCCTGGGTAGAACG...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACCCCAGGCCCTGTCCTaGCTGGTCAGGTCTGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: KHQAALLVALQSGGGAALPQALS*LVRSGA Trigger: TGCACCAGACCTGACCAGCCAGGACAGGGCCTGGGG...TAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGGGTGCCACTCAGAGTTaGGGCTGGGGAAGTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTGATQS*GWGSPE Trigger: CTCTGGACTTCCCCAGCCCCAACTCTGAGTGGCACC...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | TGTAAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTGCAGGGCGACTGGGATaGAGGGGTGAAATGCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: CKHQAALLVALQSGGGAAAGRLG*RGEMQG Trigger: ACCTTGCATTTCACCCCTGCATCCCAGTCGCCCTGC...AGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTTACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTAAGGCTGCAGGGCGACTaGGATGCAGGGGTGAAATGC | + |
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Preference number: 4 (lower is better) Translates to: KHQAALLVALQSGGGAALRLQGD*DAGVKC Trigger: GCATTTCACCCCTGCATCCCAGTCGCCCTGCAGCCT...TAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | GGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACTCTGACCACTCAGAGTTGGGGCTaGGGAAGTCCAGAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: GGFIGSIAIWGWSSFTLTTQSWG*GSPENQ Trigger: CTGGTTCTCTGGACTTCCCCAGCCCCAACTCTGAGT...GGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGTGCGGCGCTTCATCTTaGCTGAGGTCCTCTGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTCGASS*LRSSAV Trigger: GACTGCAGAGGACCTCAGCCAAGATGAAGCGCCGCA...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| 3UTR CAA 72 bp | CCTCGGTTCCCCAGGTTAGGTAATAATTCACAATGCTaGACTCGGACTCCGGGCTCCCTCTGCACGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: PRFPRLGNNSQC*TRTPGSLCTVI Trigger: TATGACCGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAACCGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGTCTGCAGTCTCTGGATaGTGCGTTCTACCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTSAVSG*CVLPRA Trigger: AGCCCTGGGTAGAACGCATCATCCAGAGACTGCAGA...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | TGTAAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTAGCTGTCTGGGTGTGTaGAGGATCTGTGTGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CKHQAALLVALQSGGGAASCLGV*RICVRL Trigger: CAGCCTCACACAGATCCTGCACACACCCAGACAGCT...AGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR TCA 90 bp | TTCCCCAGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCATAATTCACAATGCTTaGCTCGGACTCCGGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FPRLGNNSQCLTRTPGSLIIHNA*LGLRAP Trigger: GGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTAT...GAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGCGATGTACCCAGGGATaGGTTTCTGGGTCACAGACA | + |
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Preference number: 4 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTRCTQG*VSGSQT Trigger: TGTCTGTGACCCAGAAACCCATCCCTGGGTACATCG...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | GGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACTCTGACCATTGCAATCTGGGGGTaGAGCAGCTTTACTCTGACC | + |
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Preference number: 4 (lower is better) Translates to: GGFIGSIAIWGWSSFTLTIAIWG*SSFTLT Trigger: GGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAAT...GGTCAGAGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | AAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTACTTCAGCATCATTGGTaGCACTCAGAGTTGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KHQAALLVALQSGGGAALLQHHW*HSELGL Trigger: CAGCCCCAACTCTGAGTGGCACCAATGATGCTGAAG...TAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR GCA 90 bp | AAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTTTATTGGCTGAGGTCCTCTaGAGTCTCTGGATGATGCGT | + |
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Preference number: 4 (lower is better) Translates to: KHQAALLVALQSGGGAALLAEVL*SLWMMR Trigger: ACGCATCATCCAGAGACTGCAGAGGACCTCAGCCAA...TAAAGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | TGTAAACACCAGGCGGCTTTATTGGTAGCATTGCAATCTGGGGGTGGAGCAGCTAGTCTTCAGCATCATTaGTGCCACTCAGAGTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: CKHQAALLVALQSGGGAASLQHH*CHSELG Trigger: CCCCAACTCTGAGTGGCACCAATGATGCTGAAGACT...AGCTGCTCCACCCCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTGTTTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CCA 90 bp | TTCCCCAGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCGGTAGCATTGCAATCTaGGGGTGGAGCAGCTTTACT | + |
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Preference number: 4 (lower is better) Translates to: FPRLGNNSQCLTRTPGSLGSIAI*GWSSFT Trigger: AGTAAAGCTGCTCCACCCCCAGATTGCAATGCTACC...GAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCTGGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS GCA 90 bp | CTGCAGTCTCTGGATGATGCGTTCTACCCAGGGCTGGTCTGGGGGTaGACAGAGCTGGCGGCCCCTCAGTGTGGTGAACACTACAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: LQSLDDAFYPGLVWG*TELAAPQCGEHYSR Trigger: CCTGCTGTAGTGTTCACCACACTGAGGGGCCGCCAGCTCTGTGCACCCCCAGACCAGCCCTGGGTAGAACGCATCATCCAGAGACTGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000311925.7 ENST00000378800.3 ENST00000485502.1 |
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| CDS-3UTR CAA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGCTGCGGCGCTTCATCTaGGCTGAGGTCCTCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTLRRFI*AEVLCS Trigger: ACTGCAGAGGACCTCAGCCAAGATGAAGCGCCGCAG...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS-3UTR CAA 90 bp | AGGTTAGGTAATAATTCACAATGCTTGACTCGGACTCCGGGCTCCCTCTGCACGCACCAGGCGGCTTTATaGGTAGCATTGCAATCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RLGNNSQCLTRTPGSLCTHQAAL*VALQSG Trigger: CCCAGATTGCAATGCTACCAATAAAGCCGCCTGGTG...CGTGCAGAGGGAGCCCGGAGTCCGAGTCAAGCATTGTGAATTATTACCTAACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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| CDS CCA 72 bp | CAGTCTCTGGATGATGCGTTCTACCCAGGGCTGGTCTaGGGGTGCACAGAGCTGGCGGCCCCTCAGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: QSLDDAFYPGLV*GCTELAAPQCG Trigger: ACCACACTGAGGGGCCGCCAGCTCTGTGCACCCCCAGACCAGCCCTGGGTAGAACGCATCATCCAGAGACTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000311925.7 ENST00000378800.3 ENST00000485502.1 |
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| CDS TCA 72 bp | TGGAGGGTGAACAGAGGCAGGCCAACGGTGAATGTGTaGGCGCCAGCTGTCTGGGTGTGTGCAGGATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: WRVNRGRPTVNV*APAVWVCAGSV Trigger: CACAGATCCTGCACACACCCAGACAGCTGGCGCTCACACATTCACCGTTGGCCTGCCTCTGTTCACCCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000311925.7 |
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