Pregenerated sensors for CCDC86 (Homo sapiens)
Ensembl gene IDs: ENSG00000110104Ensembl transcript IDs: ENST00000227520.10, ENST00000535217.1, ENST00000545580.1, ENST00000649393.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCTGTCCCACACAGACCTaGCTGGAAGCCTTCAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: RGQGLWSIVCICRCLGLCCPTQT*LEAFKG Trigger: GCCTTTGAAGGCTTCCAGGCAGGTCTGTGTGGGACA...GCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR-3UTR GCA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAACCTTTTCGCTTCTTTaGCCCGAAGCCGCCTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: KAPRGQGLWSIVCICRCLTFSLL*PEAACH Trigger: GTGACAGGCGGCTTCGGGGCAAAGAAGCGAAAAGGT...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000535217.1 |
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| 3UTR-3UTR TCA 90 bp | CGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCATGGACCTAGGATGCTaGGAAAGGGCATACACTGCT | + |
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Preference number: 2 (lower is better) Translates to: RGQGLWSIVCICRCLGLCMDLGC*ERAYTA Trigger: AGCAGTGTATGCCCTTTCTCAGCATCCTAGGTCCAT...GCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTATGGACCTAGGATGCTaGGAAAGGGCATACACTGCT | + |
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Preference number: 2 (lower is better) Translates to: RAGTLVYCLYLPVPRIVPMDLGC*ERAYTA Trigger: AGCAGTGTATGCCCTTTCTCAGCATCCTAGGTCCAT...AGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR CAA 90 bp | AATGAAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTaGCCGGTGCCTAGGATTGTGCCTGTATGCAACAGGCACTCAATA | + |
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Preference number: 2 (lower is better) Translates to: NESSSRAGTLVYCLY*PVPRIVPVCNRHSI Trigger: TATTGAGTGCCTGTTGCATACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTTCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR CAA 90 bp | ATGTTTTCTCTCCATCAGAATGAAAGCTCCTCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: MFSLHQNESSSRAGT*VYCLYLPVPRIVPV Trigger: TACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTTCATTCTGATGGAGAGAAAACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| 3UTR GCA 72 bp | CCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTaGCGGTGCCTAGGATTGTGCCTGTATGCAACAGGC | + |
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Preference number: 3 (lower is better) Translates to: PRGQGLWSIVCI*RCLGLCLYATG Trigger: GCCTGTTGCATACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR-3UTR CAA 90 bp | CGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCGTCTATTGTCTGTATTaGCCGGTGCCTAGGATTGTG | + |
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Preference number: 3 (lower is better) Translates to: RGQGLWSIVCICRCLGLCVYCLY*PVPRIV Trigger: CACAATCCTAGGCACCGGCAAATACAGACAATAGAC...GCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR-3UTR CAA 90 bp | CGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCTCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: RGQGLWSIVCICRCLGLCSRAGT*VYCLYL Trigger: CAAATACAGACAATAGACCAAAGTCCCTGCCCTCGA...GCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR GCA 72 bp | GGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTaGCTAGGATTGTGCCTGTATGCAACAGGCACTCAA | + |
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Preference number: 3 (lower is better) Translates to: GQGLWSIVCICR*LGLCLYATGTQ Trigger: TTGAGTGCCTGTTGCATACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| 3UTR-3UTR CAA 90 bp | AGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTTCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: RAGTLVYCLYLPVPRIVPSRAGT*VYCLYL Trigger: CAAATACAGACAATAGACCAAAGTCCCTGCCCTCGA...AGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR CCA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTATGCTCGGCTCATGGCTaGGGGGACGCTGCGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KAPRGQGLWSIVCICRCLCSAHG*GDAAPG Trigger: GCCAGGCGCAGCGTCCCCCCAGCCATGAGCCGAGCA...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000535217.1 |
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| CDS-3UTR GCA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGCGCCTGGCTCTGGCTaGCCTTGGGGTGACTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: KAPRGQGLWSIVCICRCLAPGSG*PWGDSK Trigger: CTTGGAGTCACCCCAAGGGCAGCCAGAGCCAGGCGC...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR GCA 90 bp | AGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTGCGCCTGGCTCTGGCTaGCCTTGGGGTGACTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: RAGTLVYCLYLPVPRIVPAPGSG*PWGDSK Trigger: CTTGGAGTCACCCCAAGGGCAGCCAGAGCCAGGCGC...AGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR GCA 90 bp | AGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTCAGCTGGAGGTGGCTTaGTCGGCTCATGGCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: RAGTLVYCLYLPVPRIVPQLEVA*SAHGWG Trigger: CCCCCAGCCATGAGCCGAGCAAGCCACCTCCAGCTG...AGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000535217.1 |
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| CDS-3UTR TCA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTATCTCGTCCGCGAAACTaGGGTGAGGCTCTCGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KAPRGQGLWSIVCICRCLSRPRN*GEALGG Trigger: TCCCCCGAGAGCCTCACCTCAGTTTCGCGGACGAGA...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR TCA 90 bp | CAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTGTATTCTCGTCCGCGAAACTaGGGTGAGGCTCTCGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QGLWSIVCICRCLGLCLYSRPRN*GEALGG Trigger: TCCCCCGAGAGCCTCACCTCAGTTTCGCGGACGAGA...ATACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR GCA 90 bp | AGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTACCTTTTCGCTTCTTTaGCCCGAAGCCGCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: RAGTLVYCLYLPVPRIVPTFSLL*PEAACH Trigger: GTGACAGGCGGCTTCGGGGCAAAGAAGCGAAAAGGT...AGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR GCA 90 bp | ATTATGTTTTCTCTCCATCAGAATGAAAGCTCCTCGAGGGCAGGGACTTTGGTCACCTTTTCGCTTCTTTaGCCCGAAGCCGCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: IMFSLHQNESSSRAGTLVTFSLL*PEAACH Trigger: GTGACAGGCGGCTTCGGGGCAAAGAAGCGAAAAGGT...GACCAAAGTCCCTGCCCTCGAGGAGCTTTCATTCTGATGGAGAGAAAACATAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| 3UTR CAA 72 bp | CTCCATCAGAATGAAAGCTCCTCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATT | + |
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Preference number: 4 (lower is better) Translates to: LHQNESSSRAGT*VYCLYLPVPRI Trigger: AATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTTCATTCTGATGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| CDS-3UTR TCA 90 bp | ATTATGTTTTCTCTCCATCAGAATGAAAGCTCCTCGAGGGCAGGGACTTTGGTCATGGACCTAGGATGCTaGGAAAGGGCATACACTGCT | + |
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Preference number: 4 (lower is better) Translates to: IMFSLHQNESSSRAGTLVMDLGC*ERAYTA Trigger: AGCAGTGTATGCCCTTTCTCAGCATCCTAGGTCCAT...GACCAAAGTCCCTGCCCTCGAGGAGCTTTCATTCTGATGGAGAGAAAACATAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| CDS GCA 90 bp | AGGCTCTGGACCTTCTTCCCCAGAGCCCAGGCAGAACCACCTCCTTaGTGGCCTGACAGGCGGCCTTCCAGGGCTGCAGAAACTTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: RLWTFFPRAQAEPPP*WPDRRPSRAAETWG Trigger: GCCCCAAGTTTCTGCAGCCCTGGAAGGCCGCCTGTCAGGCCAGCAAGGAGGTGGTTCTGCCTGGGCTCTGGGGAAGAAGGTCCAGAGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS TCA 90 bp | GCTGTAAAGTTCTGTTGCTTCCGCCAAGTGCATTTGGCCCGGGTGTaGATGCCTCTGGAGGCGGGGCGCTCACCCCCTAGGGAGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: AVKFCCFRQVHLARV*MPLEAGRSPPREVA Trigger: GGCCACCTCCCTAGGGGGTGAGCGCCCCGCCTCCAGAGGCATTCACACCCGGGCCAAATGCACTTGGCGGAAGCAACAGAACTTTACAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000545580.1 ENST00000649393.1 |
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| CDS TCA 90 bp | AGGCGGCCTTCCAGGGCTGCAGAAACTTGGGGCGGGAGGGAACCCTaGTCGTGCTGGCTGCCATTTCTCAAGCCTTGGCTACATGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RRPSRAAETWGGREP*SCWLPFLKPWLHAS Trigger: AGAGGCATGTAGCCAAGGCTTGAGAAATGGCAGCCAGCACGATCAGGGTTCCCTCCCGCCCCAAGTTTCTGCAGCCCTGGAAGGCCGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS GCA 90 bp | GGGCTGCAGAAACTTGGGGCGGGAGGGAACCCTGATCGTGCTGGCTaGCATTTCTCAAGCCTTGGCTACATGCCTCTGAGGTGGGTACTC | + |
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Preference number: 5 (lower is better) Translates to: GLQKLGAGGNPDRAG*HFSSLGYMPLRWVL Trigger: GAGTACCCACCTCAGAGGCATGTAGCCAAGGCTTGAGAAATGGCAGCCAGCACGATCAGGGTTCCCTCCCGCCCCAAGTTTCTGCAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS-3UTR CAA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTACTCCGGACCGGGAGCTaGCTGACCGGGGTAAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: KAPRGQGLWSIVCICRCLLRTGS*LTGVRL Trigger: GAGCCTTACCCCGGTCAGCAAGCTCCCGGTCCGGAG...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| CDS CCA 90 bp | CGTGCTGGCTGCCATTTCTCAAGCCTTGGCTACATGCCTCTGAGGTaGGTACTCCTATCCTCTCCACTTACAGAGGAGCAGGCCAAGGCG | + |
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Preference number: 5 (lower is better) Translates to: RAGCHFSSLGYMPLR*VLLSSPLTEEQAKA Trigger: CGCCTTGGCCTGCTCCTCTGTAAGTGGAGAGGATAGGAGTACCCACCTCAGAGGCATGTAGCCAAGGCTTGAGAAATGGCAGCCAGCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS-3UTR CAA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGTCTATTGTCTGTATTaGCCGGTGCCTAGGATTGTG | + |
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Preference number: 5 (lower is better) Translates to: KAPRGQGLWSIVCICRCLVYCLY*PVPRIV Trigger: CACAATCCTAGGCACCGGCAAATACAGACAATAGAC...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR CAA 90 bp | AAAGCTCCTCGAGGGCAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTATCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: KAPRGQGLWSIVCICRCLSRAGT*VYCLYL Trigger: CAAATACAGACAATAGACCAAAGTCCCTGCCCTCGA...TAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTGCCCTCGAGGAGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR CAA 90 bp | CAGGGACTTTGGTCTATTGTCTGTATTTGCCGGTGCCTAGGATTGTGCCTGTATGTCTATTGTCTGTATTaGCCGGTGCCTAGGATTGTG | + |
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Preference number: 5 (lower is better) Translates to: QGLWSIVCICRCLGLCLYVYCLY*PVPRIV Trigger: CACAATCCTAGGCACCGGCAAATACAGACAATAGAC...ATACAGGCACAATCCTAGGCACCGGCAAATACAGACAATAGACCAAAGTCCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000227520.10 ENST00000535217.1 |
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| CDS-3UTR CAA 90 bp | ATTATGTTTTCTCTCCATCAGAATGAAAGCTCCTCGAGGGCAGGGACTTTGGTCTCGAGGGCAGGGACTTaGGTCTATTGTCTGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: IMFSLHQNESSSRAGTLVSRAGT*VYCLYL Trigger: CAAATACAGACAATAGACCAAAGTCCCTGCCCTCGA...GACCAAAGTCCCTGCCCTCGAGGAGCTTTCATTCTGATGGAGAGAAAACATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000227520.10 |
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| CDS GCA 72 bp | GGGTGCATACAGGGTCTGTGGGGCAAGCGCCACCCATaGCCTGTCTCCTCTCGGCCGGAGGCTCTGGACCTT | + |
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Preference number: 6 (lower is better) Translates to: GCIQGLWGKRHP*PVSSRPEALDL Trigger: AAGGTCCAGAGCCTCCGGCCGAGAGGAGACAGGGCATGGGTGGCGCTTGCCCCACAGACCCTGTATGCACCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS GCA 72 bp | ACCTTCTTCCCCAGAGCCCAGGCAGAACCACCTCCTTaGTGGCCTGACAGGCGGCCTTCCAGGGCTGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: TFFPRAQAEPPP*WPDRRPSRAAE Trigger: TTCTGCAGCCCTGGAAGGCCGCCTGTCAGGCCAGCAAGGAGGTGGTTCTGCCTGGGCTCTGGGGAAGAAGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS TCA 72 bp | TCCAGGGCTGCAGAAACTTGGGGCGGGAGGGAACCCTaGTCGTGCTGGCTGCCATTTCTCAAGCCTTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: SRAAETWGGREP*SCWLPFLKPWL Trigger: TAGCCAAGGCTTGAGAAATGGCAGCCAGCACGATCAGGGTTCCCTCCCGCCCCAAGTTTCTGCAGCCCTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS CAA 72 bp | GAGTCCAGGCTACGCGGCCCCTGCTGTAAAGTTCTGTaGCTTCCGCCAAGTGCATTTGGCCCGGGTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: ESRLRGPCCKVL*LPPSAFGPGVN Trigger: ATTCACACCCGGGCCAAATGCACTTGGCGGAAGCAACAGAACTTTACAGCAGGGGCCGCGTAGCCTGGACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000545580.1 ENST00000649393.1 |
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| CDS GCA 72 bp | CTGTCAGCGACTGCAGAGTCCAGGCTACGCGGCCCCTaGTGTAAAGTTCTGTTGCTTCCGCCAAGTGCATTT | + |
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Preference number: 6 (lower is better) Translates to: LSATAESRLRGP*CKVLLLPPSAF Trigger: AAATGCACTTGGCGGAAGCAACAGAACTTTACAGCAGGGGCCGCGTAGCCTGGACTCTGCAGTCGCTGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000545580.1 ENST00000649393.1 |
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| CDS CAA 90 bp | GAGAGGTTAAATAGCTGCCTAAAGATACCTTGTGGCAGTCAGGACTaGAATCCTGTCAGCGACTGCAGAGTCCAGGCTACGCGGCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: ERLNSCLKIPCGSQD*NPVSDCRVQATRPL Trigger: CAGGGGCCGCGTAGCCTGGACTCTGCAGTCGCTGACAGGATTCAAGTCCTGACTGCCACAAGGTATCTTTAGGCAGCTATTTAACCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS TCA 72 bp | CTGGCTGCCATTTCTCAAGCCTTGGCTACATGCCTCTaGGGTGGGTACTCCTATCCTCTCCACTTACAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LAAISQALATCL*GGYSYPLHLQR Trigger: CCTCTGTAAGTGGAGAGGATAGGAGTACCCACCTCAGAGGCATGTAGCCAAGGCTTGAGAAATGGCAGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS CCA 72 bp | TGCCATTTCTCAAGCCTTGGCTACATGCCTCTGAGGTaGGTACTCCTATCCTCTCCACTTACAGAGGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: CHFSSLGYMPLR*VLLSSPLTEEQ Trigger: CTGCTCCTCTGTAAGTGGAGAGGATAGGAGTACCCACCTCAGAGGCATGTAGCCAAGGCTTGAGAAATGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS CCA 72 bp | CATTCCATTTCAGAACAGTGTGAGTGGTTAAAGTTCTaGGTAATGATTCAGGATCTTCCCCGCCAAGACCGG | + |
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Preference number: 6 (lower is better) Translates to: HSISEQCEWLKF*VMIQDLPRQDR Trigger: CCGGTCTTGGCGGGGAAGATCCTGAATCATTACCCAGAACTTTAACCACTCACACTGTTCTGAAATGGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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| CDS CCA 72 bp | AGGGAGGTGGCCCATTCCATTTCAGAACAGTGTGAGTaGTTAAAGTTCTGGGTAATGATTCAGGATCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: REVAHSISEQCE*LKFWVMIQDLP Trigger: GGGAAGATCCTGAATCATTACCCAGAACTTTAACCACTCACACTGTTCTGAAATGGAATGGGCCACCTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649393.1 |
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