RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC85B (Homo sapiens)

Ensembl gene IDs: ENSG00000175602

Ensembl transcript IDs: ENST00000312579.4

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTaGGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCC +
Preference number: 1 (lower is better)
Translates to: PSWCQDFLVHASGPS*AARTASRSRGPQRS
Trigger: GGACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR GCA 90 bp AGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATaGCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCG +
Preference number: 1 (lower is better)
Translates to: SKSEGPFLVSGFLSP*QRPLLRSQDGVQVP
Trigger: CGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR GCA 72 bp CCCAGCAAGTCCCTCCGCTCCAGCCTTCAGTCCCCCTaGTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTTG +
Preference number: 3 (lower is better)
Translates to: PSKSLRSSLQSP*CPASKSEGPFL
Trigger: CAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAGGCTGGAGCGGAGGGACTTGCTGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR GCA 72 bp AGCAAGTCCCTCCGCTCCAGCCTTCAGTCCCCCTGCTaGCCTGCCAGCAAGAGCGAGGGGCCCTTCTTGGTG +
Preference number: 3 (lower is better)
Translates to: SKSLRSSLQSPC*PASKSEGPFLV
Trigger: CACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAGGCTGGAGCGGAGGGACTTGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR GCA 72 bp TGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTaGGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCA +
Preference number: 3 (lower is better)
Translates to: CQDFLVHASGPS*AARTASRSRGP
Trigger: TGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR CCA 72 bp CCTGCTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTTaGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCC +
Preference number: 3 (lower is better)
Translates to: PAALPARARGPS*CQDFLVHASGP
Trigger: GGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR TCA 90 bp TCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCAGGCCAGGGGCAACTaGTCCGGACTGCCCACGCTG +
Preference number: 4 (lower is better)
Translates to: SMPAAPPAQPGRRPGPEVQARGN*SGLPTL
Trigger: CAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTG...GACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp CCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCTGCCGATTCACCTCCTaGATGAGGCGGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: PAAPPAQPGRRPGPEVHSCRFTS*MRRPRC
Trigger: GCAGCGCGGCCGCCTCATGCAGGAGGTGAATCGGCA...GCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp CGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCCGGATCTCGCCCAGGTaGCCCTGCAGCTGCCGATTC +
Preference number: 4 (lower is better)
Translates to: RPLLRSQDGVQVPRSTAVRISPR*PCSCRF
Trigger: GAATCGGCAGCTGCAGGGCCACCTGGGCGAGATCCG...GACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp CGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCACGGCCCGGGATGCTTaGGTCCCGAAGAGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: RPLLRSQDGVQVPRSTAVTARDA*VPKSCH
Trigger: GTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGT...GACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp ACAGCGGTCCCGGGGCTCGGGGAGCAATCCGGGCGGGCGTCGGCGTGGAGGAAGCTTCAGTCCCCCTGCTaGCCTGCCAGCAAGAGCGAG +
Preference number: 4 (lower is better)
Translates to: TAVPGLGEQSGRASAWRKLQSPC*PASKSE
Trigger: CTCGCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAG...CTTCCTCCACGCCGACGCCCGCCCGGATTGCTCCCCGAGCCCCGGGACCGCTGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp GCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTAGACGCCGGTTGAGCTaGTTGAGCTCGCGGATCTCG +
Preference number: 4 (lower is better)
Translates to: AAPPAQPGRRPGPEVHSGRRRLS*LSSRIS
Trigger: CGAGATCCGCGAGCTCAAGCAGCTCAACCGGCGTCT...ACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCAGCCTTCAGTCCCCCTaGTGCCCTGCCAGCAAGAGC +
Preference number: 4 (lower is better)
Translates to: SMPAAPPAQPGRRPGPEVSLQSP*CPASKS
Trigger: GCTCTTGCTGGCAGGGCAGCAGGGGGACTGAAGGCT...GACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp CGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCCCACGCTGCCAGTGCTaGAGCTTCCATCGCCTAGGT +
Preference number: 4 (lower is better)
Translates to: RPLLRSQDGVQVPRSTAVPRCQC*SFHRLG
Trigger: ACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGTGG...GACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCTCACGGTTCTCTGCCTaGAGACGCCGGTTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: SMPAAPPAQPGRRPGPEVSRFSA*RRRLSC
Trigger: GCAGCTCAACCGGCGTCTGCAGGCAGAGAACCGTGA...GACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCTGGGTCCCGAAGAGCTaGCACTGGCGTGCGGCGCGC +
Preference number: 4 (lower is better)
Translates to: FLSPCQRPLLRSQDGVQVWVPKS*HWRAAR
Trigger: GCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCA...GACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp CCCCCTGCTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCGTCCCCCTGCTGCCCTaGCAGCAAGAGCGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: PPAALPARARGPSWCQDFVPLLP*QQERGA
Trigger: GGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGGAC...GAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACATGAGGCGGCCGCGCTaGACCAGTGCCGCCAGGCGC +
Preference number: 4 (lower is better)
Translates to: LVSGFLSPCQRPLLRSQDMRRPR*TSAARR
Trigger: GCGCCTGGCGGCACTGGTGCAGCGCGGCCGCCTCAT...GTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp CCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCTGGTCAGGCCTCTaGAGCATCGCCCGCCCGCCG +
Preference number: 4 (lower is better)
Translates to: PARARGPSWCQDFLVHASGWSGL*SIARPP
Trigger: CGGCGGGCGGGCGATGCTCCAGAGGCCTGACCAGCC...GCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp GGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCGGGCGGGCGTCGGCGTaGAGGAAGCAGTGCCTTCAA +
Preference number: 4 (lower is better)
Translates to: GPFLVSGFLSPCQRPLLRGRASA*RKQCLQ
Trigger: TTGAAGGCACTGCTTCCTCCACGCCGACGCCCGCCC...GCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
3UTR CAA 72 bp CCCTGCTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTaGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCC +
Preference number: 4 (lower is better)
Translates to: PCCPASKSEGPF*VSGFLSPCQRP
Trigger: GGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR TCA 90 bp TTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGATTCACCTCCTGCATaGGGCGGCCGCGCTGCACCA +
Preference number: 4 (lower is better)
Translates to: LVSGFLSPCQRPLLRSQDDSPPA*GGRAAP
Trigger: TGGTGCAGCGCGGCCGCCTCATGCAGGAGGTGAATC...GTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TGCTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCTCCTCCAGGCCGCCTaGCTCGGCCTCCATGGCTGG +
Preference number: 4 (lower is better)
Translates to: CCPASKSEGPFLVSGFLSLLQAA*LGLHGW
Trigger: CCAGCCATGGAGGCCGAGGCAGGCGGCCTGGAGGAG...ACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp GCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCTCGCCCAGGTGGCCCTaGAGCTGCCGATTCACCTCC +
Preference number: 4 (lower is better)
Translates to: ARARGPSWCQDFLVHASGSPRWP*SCRFTS
Trigger: GGAGGTGAATCGGCAGCTGCAGGGCCACCTGGGCGA...GCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp CCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGCGCACGGCCCGGGATaGTTGGGTCCCGAAGAGCTG +
Preference number: 4 (lower is better)
Translates to: PARARGPSWCQDFLVHASAHGPG*LGPEEL
Trigger: CAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGC...GCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp GCCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGAGCTCGGCCAGCTTCTaGCAACAGCCGCCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: ASKSEGPFLVSGFLSPCQSSASF*QQPPRS
Trigger: GGACCTGGGCGGCTGTTGGCAGAAGCTGGCCGAGCT...CTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp GGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCAGCACTAGCTCTTCCTTaGCTAGCGCCGCCATCTCCT +
Preference number: 4 (lower is better)
Translates to: GPSWCQDFLVHASGPSCAALALP*LAPPSP
Trigger: AGGAGATGGCGGCGCTAGGCAAGGAAGAGCTAGTGC...TGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp CCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCCCGGACTGCCCACGCTaGCAGTGCTGGAGCTTCCAT +
Preference number: 4 (lower is better)
Translates to: PARARGPSWCQDFLVHASPDCPR*QCWSFH
Trigger: ATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGG...GCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp TGCTGCCCTGCCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTGCAACTGATCCGGACTaGCCACGCTGCCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: CCPASKSEGPFLVSGFLSATDPD*PRCQCW
Trigger: CCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGC...ACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGGGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR GCA 90 bp CCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCCAGCTGCCCACGCTGCCAGTaGTGGAGCTTCCATCGCCTA +
Preference number: 4 (lower is better)
Translates to: PARARGPSWCQDFLVHASCPRCQ*WSFHRL
Trigger: TAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCA...GCTGGCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CCA 90 bp CCTGCCAGCAAGAGCGAGGGGCCCTTCTTGGTGTCAGGATTTCTTAGTCCATGCGCGAGGGGCCCTTCTTaGTGTCAGGATTTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: PASKSEGPFLVSGFLSPCARGPS*CQDFLV
Trigger: GACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGC...GCATGGACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCTCTTGCTGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 90 bp CCCAGGTCCTCGCGCACGGCCCGGGATGCTTGGGTCCCGAAGAGCTaGCACTGGCGTGCGGCGCGCCGCCCGCGCTGGCGCTCCGAGTCC +
Preference number: 5 (lower is better)
Translates to: PRSSRTARDAWVPKS*HWRAARRPRWRSES
Trigger: GGACTCGGAGCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGAGGACCTGGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 90 bp GCGCACGGCCCGGGATGCTTGGGTCCCGAAGAGCTGCCACTGGCGTaGGGCGCGCCGCCCGCGCTGGCGCTCCGAGTCCAGGAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: AHGPGCLGPEELPLA*GAPPALALRVQEAA
Trigger: TGCTGCTTCCTGGACTCGGAGCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CCA 90 bp TCTCCTCGTCCGTCAGCTCCTCCAGGCCGCCTGCCTCGGCCTCCATaGCTGGTCAGGCCTCTGGAGCATCGCCCGCCCGCCGCCGCGGCC +
Preference number: 5 (lower is better)
Translates to: SPRPSAPPGRLPRPP*LVRPLEHRPPAAAA
Trigger: GGCCGCGGCGGCGGGCGGGCGATGCTCCAGAGGCCTGACCAGCCATGGAGGCCGAGGCAGGCGGCCTGGAGGAGCTGACGGACGAGGAGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CCA 90 bp TCCTCGCGCACGGCCCGGGATGCTTGGGTCCCGAAGAGCTGCCACTaGCGTGCGGCGCGCCGCCCGCGCTGGCGCTCCGAGTCCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SSRTARDAWVPKSCH*RAARRPRWRSESRK
Trigger: CTTCCTGGACTCGGAGCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGAGGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 90 bp TCCCGCAGCAGCTCCTCCTGGCGGCCCTCCAGCTCGGCCAGCTTCTaGCAACAGCCGCCCAGGTCCTCGCGCACGGCCCGGGATGCTTGG +
Preference number: 5 (lower is better)
Translates to: SRSSSSWRPSSSASF*QQPPRSSRTARDAW
Trigger: CCAAGCATCCCGGGCCGTGCGCGAGGACCTGGGCGGCTGTTGGCAGAAGCTGGCCGAGCTGGAGGGCCGCCAGGAGGAGCTGCTGCGGGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CAA 90 bp TCCCGGGGCTCGGGGAGCAATCCGGGCGGGCGTCGGCGTGGAGGAAGCAGTGCCCGCCGGTTGAGCTGCTaGAGCTCGCGGATCTCGCCC +
Preference number: 5 (lower is better)
Translates to: SRGSGSNPGGRRRGGSSARRLSC*SSRISP
Trigger: GGGCGAGATCCGCGAGCTCAAGCAGCTCAACCGGCG...GGCACTGCTTCCTCCACGCCGACGCCCGCCCGGATTGCTCCCCGAGCCCCGGGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CAA 90 bp CCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCCCGGCGCACTAGCTCTTCCTaGCCTAGCGCCGCCATCTCC +
Preference number: 5 (lower is better)
Translates to: PSCAARTASRSRGPQRSRRTSSS*PSAAIS
Trigger: GGAGATGGCGGCGCTAGGCAAGGAAGAGCTAGTGCG...CCGGGACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CAA 90 bp TTTCTTAGTCCATGCCAGCGGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCACGGCCCGGGATGCTaGGGTCCCGAAGAGCTGCCA +
Preference number: 5 (lower is better)
Translates to: FLSPCQRPLLRSQDGVQVHGPGC*GPEELP
Trigger: TGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTG...GACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCCGCTGGCATGGACTAAGAAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS-3UTR CAA 90 bp GGCCCCTCCTGCGCAGCCAGGACGGCGTCCAGGTCCCGAGGTCCACAGCGGTCCAGCGAGGGGCCCTTCTaGGTGTCAGGATTTCTTAGT +
Preference number: 5 (lower is better)
Translates to: GPSCAARTASRSRGPQRSSEGPF*VSGFLS
Trigger: ACTAAGAAATCCTGACACCAAGAAGGGCCCCTCGCT...GGACCGCTGTGGACCTCGGGACCTGGACGCCGTCCTGGCTGCGCAGGAGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 90 bp GCCTTCAATCATCGGGGGAACAGGCCAGGGGCAACTGATCCGGACTaGCCACGCTGCCAGTGCTGGAGCTTCCATCGCCTAGGTCGCGGG +
Preference number: 5 (lower is better)
Translates to: AFNHRGNRPGATDPD*PRCQCWSFHRLGRG
Trigger: CCCGCGACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTGTTCCCCCGATGATTGAAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS TCA 90 bp AGGAAGCAGTGCCTTCAATCATCGGGGGAACAGGCCAGGGGCAACTaGTCCGGACTGCCCACGCTGCCAGTGCTGGAGCTTCCATCGCCT +
Preference number: 5 (lower is better)
Translates to: RKQCLQSSGEQARGN*SGLPTLPVLELPSP
Trigger: AGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTGTTCCCCCGATGATTGAAGGCACTGCTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp TCGCGCACGGCCCGGGATGCTTGGGTCCCGAAGAGCTaGCACTGGCGTGCGGCGCGCCGCCCGCGCTGGCGC +
Preference number: 6 (lower is better)
Translates to: SRTARDAWVPKS*HWRAARRPRWR
Trigger: GCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CCA 72 bp ACGGCCCGGGATGCTTGGGTCCCGAAGAGCTGCCACTaGCGTGCGGCGCGCCGCCCGCGCTGGCGCTCCGAG +
Preference number: 6 (lower is better)
Translates to: TARDAWVPKSCH*RAARRPRWRSE
Trigger: CTCGGAGCGCCAGCGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CAA 90 bp CTTCTGCCAACAGCCGCCCAGGTCCTCGCGCACGGCCCGGGATGCTaGGGTCCCGAAGAGCTGCCACTGGCGTGCGGCGCGCCGCCCGCG +
Preference number: 6 (lower is better)
Translates to: LLPTAAQVLAHGPGC*GPEELPLACGAPPA
Trigger: CGCGGGCGGCGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGAGGACCTGGGCGGCTGTTGGCAGAAG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp AGCTGCCGATTCACCTCCTGCATGAGGCGGCCGCGCTaGACCAGTGCCGCCAGGCGCGCCGCCTCCTCCCGC +
Preference number: 6 (lower is better)
Translates to: SCRFTSCMRRPR*TSAARRAASSR
Trigger: GCGGGAGGAGGCGGCGCGCCTGGCGGCACTGGTGCAGCGCGGCCGCCTCATGCAGGAGGTGAATCGGCAGCT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CCA 72 bp CCGTCAGCTCCTCCAGGCCGCCTGCCTCGGCCTCCATaGCTGGTCAGGCCTCTGGAGCATCGCCCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: PSAPPGRLPRPP*LVRPLEHRPPA
Trigger: GGCGGGCGGGCGATGCTCCAGAGGCCTGACCAGCCATGGAGGCCGAGGCAGGCGGCCTGGAGGAGCTGACGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CAA 72 bp ACAGCCGCCCAGGTCCTCGCGCACGGCCCGGGATGCTaGGGTCCCGAAGAGCTGCCACTGGCGTGCGGCGCG +
Preference number: 6 (lower is better)
Translates to: TAAQVLAHGPGC*GPEELPLACGA
Trigger: CGCGCCGCACGCCAGTGGCAGCTCTTCGGGACCCAAGCATCCCGGGCCGTGCGCGAGGACCTGGGCGGCTGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS TCA 72 bp CCAGGTGGCCCTGCAGCTGCCGATTCACCTCCTGCATaGGGCGGCCGCGCTGCACCAGTGCCGCCAGGCGCG +
Preference number: 6 (lower is better)
Translates to: PGGPAAADSPPA*GGRAAPVPPGA
Trigger: CGCGCCTGGCGGCACTGGTGCAGCGCGGCCGCCTCATGCAGGAGGTGAATCGGCAGCTGCAGGGCCACCTGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp TCGCCCAGGTGGCCCTGCAGCTGCCGATTCACCTCCTaGATGAGGCGGCCGCGCTGCACCAGTGCCGCCAGG +
Preference number: 6 (lower is better)
Translates to: SPRWPCSCRFTS*MRRPRCTSAAR
Trigger: CCTGGCGGCACTGGTGCAGCGCGGCCGCCTCATGCAGGAGGTGAATCGGCAGCTGCAGGGCCACCTGGGCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp CCAGGGGCAACTGATCCGGACTGCCCACGCTGCCAGTaGTGGAGCTTCCATCGCCTAGGTCGCGGGGCCCGC +
Preference number: 6 (lower is better)
Translates to: PGATDPDCPRCQ*WSFHRLGRGAR
Trigger: GCGGGCCCCGCGACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CCA 72 bp GGGGCAACTGATCCGGACTGCCCACGCTGCCAGTGCTaGAGCTTCCATCGCCTAGGTCGCGGGGCCCGCACG +
Preference number: 6 (lower is better)
Translates to: GATDPDCPRCQC*SFHRLGRGART
Trigger: CGTGCGGGCCCCGCGACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CAA 72 bp GCCTCCTCCCGCCGCAGGCGCCGCACTAGCTCTTCCTaGCCTAGCGCCGCCATCTCCTCGTCCGTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: ASSRRRRRTSSS*PSAAISSSVSS
Trigger: GGAGCTGACGGACGAGGAGATGGCGGCGCTAGGCAAGGAAGAGCTAGTGCGGCGCCTGCGGCGGGAGGAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp CCTCCTCCCGCCGCAGGCGCCGCACTAGCTCTTCCTTaGCTAGCGCCGCCATCTCCTCGTCCGTCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: PPPAAGAALALP*LAPPSPRPSAP
Trigger: AGGAGCTGACGGACGAGGAGATGGCGGCGCTAGGCAAGGAAGAGCTAGTGCGGCGCCTGCGGCGGGAGGAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp AGCTCACGGTTCTCTGCCTGCAGACGCCGGTTGAGCTaGTTGAGCTCGCGGATCTCGCCCAGGTGGCCCTGC +
Preference number: 6 (lower is better)
Translates to: SSRFSACRRRLS*LSSRISPRWPC
Trigger: GCAGGGCCACCTGGGCGAGATCCGCGAGCTCAAGCAGCTCAACCGGCGTCTGCAGGCAGAGAACCGTGAGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp AACAGGCCAGGGGCAACTGATCCGGACTGCCCACGCTaGCAGTGCTGGAGCTTCCATCGCCTAGGTCGCGGG +
Preference number: 6 (lower is better)
Translates to: NRPGATDPDCPR*QCWSFHRLGRG
Trigger: CCCGCGACCTAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp GAGCAATCCGGGCGGGCGTCGGCGTGGAGGAAGCAGTaGCTTCAATCATCGGGGGAACAGGCCAGGGGCAAC +
Preference number: 6 (lower is better)
Translates to: EQSGRASAWRKQ*LQSSGEQARGN
Trigger: GTTGCCCCTGGCCTGTTCCCCCGATGATTGAAGGCACTGCTTCCTCCACGCCGACGCCCGCCCGGATTGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS CAA 72 bp TCACGGTTCTCTGCCTGCAGACGCCGGTTGAGCTGCTaGAGCTCGCGGATCTCGCCCAGGTGGCCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SRFSACRRRLSC*SSRISPRWPCS
Trigger: GCTGCAGGGCCACCTGGGCGAGATCCGCGAGCTCAAGCAGCTCAACCGGCGTCTGCAGGCAGAGAACCGTGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS GCA 72 bp CATCGGGGGAACAGGCCAGGGGCAACTGATCCGGACTaGCCACGCTGCCAGTGCTGGAGCTTCCATCGCCTA +
Preference number: 6 (lower is better)
Translates to: HRGNRPGATDPD*PRCQCWSFHRL
Trigger: TAGGCGATGGAAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTGTTCCCCCGATG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4
CDS TCA 72 bp TGCCTTCAATCATCGGGGGAACAGGCCAGGGGCAACTaGTCCGGACTGCCCACGCTGCCAGTGCTGGAGCTT +
Preference number: 6 (lower is better)
Translates to: CLQSSGEQARGN*SGLPTLPVLEL
Trigger: AAGCTCCAGCACTGGCAGCGTGGGCAGTCCGGATCAGTTGCCCCTGGCCTGTTCCCCCGATGATTGAAGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000312579.4