RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCDC66 (Homo sapiens)

Ensembl gene IDs: ENSG00000180376

Ensembl transcript IDs: ENST00000326595.11, ENST00000341455.10, ENST00000394672.8, ENST00000422222.5, ENST00000422788.5, ENST00000434467.5, ENST00000439445.5, ENST00000442522.6, ENST00000459746.5, ENST00000460838.5, ENST00000469966.1, ENST00000471681.5, ENST00000472582.5, ENST00000476142.1, ENST00000480884.5, ENST00000482673.5, ENST00000484623.5, ENST00000487739.1, ENST00000494672.1

Found 319 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCTTAATAGGTTTTGCTATATGCTCCTCCTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTACAAACACTGCTGACATCAGCCAGC +
Preference number: 1 (lower is better)
Translates to: SLIGFAICSSSEGST*LPVVGVQTLLTSAS
Trigger: GCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR TCA 90 bp TGCCATAACCACATCCTTAATAGGTTTTGCTATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCT +
Preference number: 1 (lower is better)
Translates to: CHNHILNRFCYMLLL*RFNLASGCRCTNTA
Trigger: AGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR TCA 90 bp CTTTCTTTGCTCTTCCTCCAGTTGTTTCTTCCTGCGCTTCTCTTCTaGTGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATC +
Preference number: 1 (lower is better)
Translates to: LSLLFLQLFLPALLF*CSNCFCRRLSRSSI
Trigger: GATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATCAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000471681.5
3UTR CCA 90 bp TCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTaGAATAGCTCATTTGTCTTGAGAGTCATGATTTCTTCCTTTTGT +
Preference number: 1 (lower is better)
Translates to: SCFSLCASSCARCIV*NSSFVLRVMISSFC
Trigger: ACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR GCA 90 bp TCTTCCTTTTGTTTTTGCTTAAGTATGTCTTCTTCATACTGTTTCTaGATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTTGT +
Preference number: 1 (lower is better)
Translates to: SSFCFCLSMSSSYCF*ISSRSCAKRSSSSC
Trigger: ACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAAAAGGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR CCA 90 bp TTTGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTaGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGA +
Preference number: 1 (lower is better)
Translates to: FASFPFSVRERDLFP*FTVIKICCSWSCVR
Trigger: TCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR CCA 90 bp AGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTaGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGCT +
Preference number: 1 (lower is better)
Translates to: RDLFPWFTVIKICCS*SCVRHTKLLFMFSA
Trigger: AGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR TCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCACATCAGCCAGCTCCTaGGTGTCAGGAGAGACACAG +
Preference number: 2 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPTSASS*VSGETQ
Trigger: CTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGT...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATGTGTACAAACACTGCTaGCATCAGCCAGCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDVYKHC*HQPAPE
Trigger: CTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACAC...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATCTGTGCCAGTTCCTGTaGTCGCTGCATTGTCTGGAA +
Preference number: 2 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDLCQFL*SLHCLE
Trigger: TTCCAGACAATGCAGCGAGCACAGGAACTGGCACAG...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATTATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCC +
Preference number: 2 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDYMLLL*RFNLAS
Trigger: GGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATA...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCTTGTTTCACAGCACTaGAAGGGTGCTCCAGCAGTA +
Preference number: 2 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHLVSQH*KGAPAV
Trigger: TACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAG...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp GGAGATGTGGTTTCACCATGTTGGCTAGGATGGTCTCTATTTCCTGACCTTGTGGGCAGGAGAATCACTTaGACCCAGCAAGCAGAGGTT +
Preference number: 2 (lower is better)
Translates to: GDVVSPCWLGWSLFPDLVGRRIT*TQQAEV
Trigger: AACCTCTGCTTGCTGGGTTCAAGTGATTCTCCTGCC...CACAAGGTCAGGAAATAGAGACCATCCTAGCCAACATGGTGAAACCACATCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR-3UTR GCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATAGTTCCTGTGCTCGCTaGATTGTCTGGAATAGCTCA +
Preference number: 2 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDSSCAR*IVWNSS
Trigger: TGAGCTATTCCAGACAATGCAGCGAGCACAGGAACT...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATAGTTCCTGTGCTCGCTaGATTGTCTGGAATAGCTCA +
Preference number: 2 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHSSCAR*IVWNSS
Trigger: TGAGCTATTCCAGACAATGCAGCGAGCACAGGAACT...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR CAA 90 bp GTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTCCTGGGTaGAAGGCCCAGACAATGGTGCATCGGGATCAAGGTAATAGATCT +
Preference number: 2 (lower is better)
Translates to: VFGHSLVNFGTEGPG*KAQTMVHRDQGNRS
Trigger: AGATCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTCAGTTCTGAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCTCTCGTTCCTCAATCTaGGCTGGGTCCAAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: LSSESPLRIACCRSLFFTSRSSI*AGSKRA
Trigger: TGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGA...GGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AGAGGCTCTTCTTCCTTTTTGACTAGATGCCACCTCAACTTTGACTCCGTTTCTTATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCC +
Preference number: 2 (lower is better)
Translates to: RGSSSFLTRCHLNFDSVSYMLLL*RFNLAS
Trigger: GGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATA...AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCTGGCTCCTTTATCCTaGGTTAGTTCTTGCTTGTTT +
Preference number: 2 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHLAPLS*VSSCLF
Trigger: AAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAG...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTGTCAGTTCACATGAGAGCTGGTTGTGTAAAAGAGCCTGGCATCTCTCTTGCCATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 2 (lower is better)
Translates to: LSVHMRAGCVKEPGISLAIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...GGCAAGAGAGATGCCAGGCTCTTTTACACAACCAGCTCTCATGTGAACTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR-3UTR CCA 90 bp TCTTCTTCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTA +
Preference number: 2 (lower is better)
Translates to: SSSYCFCISSRSCAKRSSSEGST*LPVVGV
Trigger: TACACCTACAACCGGAAGCCAGGTTGAACCTTCAGA...GGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTA +
Preference number: 2 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSSEGST*LPVVGV
Trigger: TACACCTACAACCGGAAGCCAGGTTGAACCTTCAGA...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTTTTCCCCCAGAGTACTaGATATATCAGCTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSFPPEY*IYQLVS
Trigger: GGAAACCAGCTGATATATTCAGTACTCTGGGGGAAA...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341455.10
3UTR-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATGAGATGAACAATTTGTaGTGTCCCTCTCCATTAATG +
Preference number: 2 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHEMNNL*CPSPLM
Trigger: CATTAATGGAGAGGGACATCACAAATTGTTCATCTC...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATGTTTCTCTATTCTTGTaGACTGATTACACTGGTCAT +
Preference number: 2 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDVSLFL*TDYTGH
Trigger: ATGACCAGTGTAATCAGTTCACAAGAATAGAGAAAC...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGAACAGCACTGAAAGGGTaGTCCAGCAGTACTGTTTCC +
Preference number: 2 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGTALKG*SSSTVS
Trigger: GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGT...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp ATCAGTCTAGAAGTGTCATGTCCCTTTTGCGCCAATTCTCGGATTCTTTGTTCTACAGCACTGAAAGGGTaGTCCAGCAGTACTGTTTCC +
Preference number: 2 (lower is better)
Translates to: ISLEVSCPFCANSRILCSTALKG*SSSTVS
Trigger: GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGT...AGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTCTGTGCCAGTTCCTGTaGTCGCTGCATTGTCTGGAA +
Preference number: 2 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGLCQFL*SLHCLE
Trigger: TTCCAGACAATGCAGCGAGCACAGGAACTGGCACAG...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CCA 90 bp AGAGGCTCTTCTTCCTTTTTGACTAGATGCCACCTCAACTTTGACTCCGTTTCTTTCCTCAATCTGAGCTaGGTCCAAGAGAGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: RGSSSFLTRCHLNFDSVSFLNLS*VQESSH
Trigger: ATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAA...AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AGAGGCTCTTCTTCCTTTTTGACTAGATGCCACCTCAACTTTGACTCCGTTTCTAGGTTGTTTGTGTGTTaGCTGAGAGAACAGCTGAGA +
Preference number: 2 (lower is better)
Translates to: RGSSSFLTRCHLNFDSVSRLFVC*LREQLR
Trigger: TCTCAGCTGTTCTCTCAGTCAACACACAAACAACCT...AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGATACAGTTGAGCCAGTaGGCACATTTTATAATTTGG +
Preference number: 2 (lower is better)
Translates to: LCSCFSLCASSCARCIVWIQLSQ*AHFIIW
Trigger: CCAAATTATAAAATGTGCTCACTGGCTCAACTGTAT...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGTCCTCTATTTTTCTTTaGCGGTCATCTTCTATTTGC +
Preference number: 2 (lower is better)
Translates to: LCSCFSLCASSCARCIVWSSIFL*RSSSIC
Trigger: GCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGA...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp CTCAGTTCTGAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCCGAAATCTCAGGAGATaGACAATTTGTGATGTCCCT +
Preference number: 2 (lower is better)
Translates to: LSSESPLRIACCRSLFFTRNLRR*TICDVP
Trigger: AGGGACATCACAAATTGTTCATCTCCTGAGATTTCG...GGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCATGCCACCTCAACTTTaGCTCCGTTTCTTGATGAGA +
Preference number: 2 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVMPPQL*LRFLMR
Trigger: TCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCAT...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTGTTTCCTCTAAAGTCTaGCTAGCTCTAAGTTGTGAA +
Preference number: 2 (lower is better)
Translates to: DALIVFVVVCLVPQSELGVSSKV*LALSCE
Trigger: TTCACAACTTAGAGCTAGTCAGACTTTAGAGGAAAC...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000471681.5
3UTR-3UTR GCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCGTGTCATGTCCCTTTTaGGCCAATTCTCGGATTCTT +
Preference number: 2 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVVSCPF*ANSRIL
Trigger: AAGAATCCGAGAATTGGCGCAAAAGGGACATGACAC...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTGCTCTAAGTTGTGAATaGCCCATCAGCTTGGACCAC +
Preference number: 2 (lower is better)
Translates to: ENQDNSLMNQSALPICHVALSCE*PISLDH
Trigger: GTGGTCCAAGCTGATGGGGCATTCACAACTTAGAGC...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471681.5
3UTR-3UTR TCA 90 bp CCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCAATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 2 (lower is better)
Translates to: PPFHSQSGKEIYFLGLQSIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...TGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422788.5
ENST00000434467.5
3UTR-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCCCTGCGCTTCTCTTCTaGTGCTCTAATTGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVPALLF*CSNCFC
Trigger: ACAAAAACAATTAGAGCATCAGAAGAGAAGCGCAGG...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000471681.5
3UTR-3UTR GCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTGTGTCATGTCCCTTTTaGGCCAATTCTCGGATTCTT +
Preference number: 2 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGVSCPF*ANSRIL
Trigger: AAGAATCCGAGAATTGGCGCAAAAGGGACATGACAC...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAATTCCTCAATCTGAGCTaGGTCCAAGAGAGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: VSSCLFFLVLNCPISSAEFLNLS*VQESSH
Trigger: ATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAA...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CCA 90 bp GGAGATGTGGTTTCACCATGTTGGCTAGGATGGTCTCTATTTCCTGACCTTGTGCTTGATGATACAGTTTaGATATTTGTCCCCTTCAAA +
Preference number: 2 (lower is better)
Translates to: GDVVSPCWLGWSLFPDLVLDDTV*IFVPFK
Trigger: TTTGAAGGGGACAAATATCCAAACTGTATCATCAAG...CACAAGGTCAGGAAATAGAGACCATCCTAGCCAACATGGTGAAACCACATCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR-3UTR TCA 90 bp TGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCTATTTATTGAGTaGTATTTCGGGTACTCCAGC +
Preference number: 2 (lower is better)
Translates to: CLLSILSQGKRSISLVYSHLFIE*YFGYSS
Trigger: GCTGGAGTACCCGAAATATCACTCAATAAATAGATG...ACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR GCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTTCCTTTTTGACTAGATaGCACCTCAACTTTGACTCC +
Preference number: 2 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGSFLTR*HLNFDS
Trigger: GGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGA...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp CCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 2 (lower is better)
Translates to: PPFHSQSGKEIYFLGLQSLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...TGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR GCA 90 bp TTGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 2 (lower is better)
Translates to: LPPFHSQSGKEIYFLGLQLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...CTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR CAA 90 bp TTCTATTTGCTTATTCAACTCTTCAATCCATTTTCTTTGCAGTTCTaGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTCCCT +
Preference number: 2 (lower is better)
Translates to: FYLLIQLFNPFSLQF*FHSTERVLQQYCFP
Trigger: AGGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341455.10
3UTR CAA 90 bp TTCTATTTGCTTATTCAACTCTTCAATCCATTTTCTTTGCAGTTCTaGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTCCTC +
Preference number: 2 (lower is better)
Translates to: FYLLIQLFNPFSLQF*FHSTERVLQQYCFL
Trigger: GAGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000471681.5
3UTR-3UTR TCA 90 bp ATCAGTCTAGAAGTGTCATGTCCCTTTTGCGCCAATTCTCGGATTCTTTGTTCTTCCTCTATTTTTCTTTaGCGGTCATCTTCTATTTGC +
Preference number: 2 (lower is better)
Translates to: ISLEVSCPFCANSRILCSSSIFL*RSSSIC
Trigger: GCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGA...AGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCTCTATTCTTGTGAACTaGTTACACTGGTCATTACAC +
Preference number: 2 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVSILVN*LHWSLH
Trigger: GTGTAATGACCAGTGTAATCAGTTCACAAGAATAGA...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCGTTTCTCTATTCTTGTaGACTGATTACACTGGTCAT +
Preference number: 2 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVVSLFL*TDYTGH
Trigger: ATGACCAGTGTAATCAGTTCACAAGAATAGAGAAAC...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGAAATAGCTGTCGTTTTTaGCCACAGTCTTGTGAATTT +
Preference number: 2 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGNSCRF*PQSCEF
Trigger: AAATTCACAAGACTGTGGCCAAAAACGACAGCTATT...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATATACAGTTGAGCCAGTaGGCACATTTTATAATTTGG +
Preference number: 2 (lower is better)
Translates to: SSAEISGDEQFVMSLSINIQLSQ*AHFIIW
Trigger: CCAAATTATAAAATGTGCTCACTGGCTCAACTGTAT...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp GAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTTTCCCCCAGAGTACTaGATATATCAGCTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: ERDLFPWFTVIKICCSWSFPPEY*IYQLVS
Trigger: GGAAACCAGCTGATATATTCAGTACTCTGGGGGAAA...AGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR-3UTR TCA 90 bp AGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAATTCCCATCTATTTATTaGGTGATATTTCGGGTACTC +
Preference number: 2 (lower is better)
Translates to: RDVFTVFLVFCILGVAGEFPSIY*VIFRVL
Trigger: GAGTACCCGAAATATCACTCAATAAATAGATGGGAA...TTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR GCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGATTTAATGAATCAAAGTaGATTGCCCATCTGTCATGT +
Preference number: 2 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGFNESK*IAHLSC
Trigger: ACATGACAGATGGGCAATGCACTTTGATTCATTAAA...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR GCA 90 bp CAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 2 (lower is better)
Translates to: QSGKEIYFLGLQSSKSVVVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...TACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGATTTCTTTTTCTAAGCTaGCTCCTTTATCCTGAGTTA +
Preference number: 2 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGFLFLS*LLYPEL
Trigger: TAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAA...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACATTAGGGGTTGCAGGTaGAATCTCTTTCTTTTGCCT +
Preference number: 2 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDIRGCR*NLFLLP
Trigger: AGGCAAAAGAAAGAGATTTCACCTGCAACCCCTAAT...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000439445.5
3UTR-3UTR GCA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTATAGGTTTTGCTATATaGTCCTCCTCTGAAGGTTCA +
Preference number: 2 (lower is better)
Translates to: VICLHTSILLRSRRIHICIGFAI*SSSEGS
Trigger: TGAACCTTCAGAGGAGGAGCATATAGCAAAACCTAT...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR TCA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACCATCTATTTATTGAGTaGTATTTCGGGTACTCCAGC +
Preference number: 2 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDHLFIE*YFGYSS
Trigger: GCTGGAGTACCCGAAATATCACTCAATAAATAGATG...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR TCA 90 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACTTCCCATCTATTTATTaGGTGATATTTCGGGTACTC +
Preference number: 2 (lower is better)
Translates to: FPWFTVIKICCSWSCVRHFPSIY*VIFRVL
Trigger: GAGTACCCGAAATATCACTCAATAAATAGATGGGAA...GTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR GCA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTTTTAATGAATCAAAGTaGATTGCCCATCTGTCATGT +
Preference number: 2 (lower is better)
Translates to: VICLHTSILLRSRRIHICFNESK*IAHLSC
Trigger: ACATGACAGATGGGCAATGCACTTTGATTCATTAAA...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR TCA 72 bp GGGGAGGTGTTTGGGTCACAGGAGATGAATCCCTCATaGATGGCTTGGTGCCATCCCCTTGGGATGATGCTT +
Preference number: 3 (lower is better)
Translates to: GEVFGSQEMNPS*MAWCHPLGMML
Trigger: AAGCATCATCCCAAGGGGATGGCACCAAGCCATTCATGAGGGATTCATCTCCTGTGACCCAAACACCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR TCA 72 bp ATGAATGGCTTGGTGCCATCCCCTTGGGATGATGCTTaGGTTCTCCCTCTGTCAGTTCACATGAGAGCTGGT +
Preference number: 3 (lower is better)
Translates to: MNGLVPSPWDDA*VLPLSVHMRAG
Trigger: ACCAGCTCTCATGTGAACTGACAGAGGGAGAACTCAAGCATCATCCCAAGGGGATGGCACCAAGCCATTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR TCA 72 bp ATCCCTCATGAATGGCTTGGTGCCATCCCCTTGGGATaGTGCTTGAGTTCTCCCTCTGTCAGTTCACATGAG +
Preference number: 3 (lower is better)
Translates to: IPHEWLGAIPLG*CLSSPSVSSHE
Trigger: CTCATGTGAACTGACAGAGGGAGAACTCAAGCATCATCCCAAGGGGATGGCACCAAGCCATTCATGAGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR CCA 72 bp GTCAGTTCACATGAGAGCTGGTTGTGTAAAAGAGCCTaGCATCTCTCTTGCCATGTAAAATGCCTGCTCCCC +
Preference number: 3 (lower is better)
Translates to: VSSHESWLCKRA*HLSCHVKCLLP
Trigger: GGGGAGCAGGCATTTTACATGGCAAGAGAGATGCCAGGCTCTTTTACACAACCAGCTCTCATGTGAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR CCA 72 bp GGTTTTGCTATATGCTCCTCCTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTACAAACACTGCTGACA +
Preference number: 3 (lower is better)
Translates to: GFAICSSSEGST*LPVVGVQTLLT
Trigger: TGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGAATGAATCAAAGTGCATaGCCCATCTGTCATGTTCCT +
Preference number: 3 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRMNQSA*PICHVP
Trigger: AGGAACATGACAGATGGGCAATGCACTTTGATTCAT...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp CTCAGTTCTGAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCCCTGTGCTCGCTGCATaGTCTGGAATAGCTCATTTG +
Preference number: 3 (lower is better)
Translates to: LSSESPLRIACCRSLFFTPVLAA*SGIAHL
Trigger: CAAATGAGCTATTCCAGACAATGCAGCGAGCACAGG...GGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR GCA 72 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTaGTTCTGGAGAAGGCCCTGTCTCAGTTCTGAAAGT +
Preference number: 3 (lower is better)
Translates to: SAKGRRLLSNSF*FWRRPCLSSES
Trigger: ACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR CCA 72 bp TTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTaGGTCCAAGAGAGCAGTCATAGAACGGAGAAAGTT +
Preference number: 3 (lower is better)
Translates to: FLSSSVSFLNLS*VQESSHRTEKV
Trigger: AACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR CCA 72 bp TTTAGTGGAGATGTGGTTTCACCATGTTGGCTAGGATaGTCTCTATTTCCTGACCTTGTGATCCACCTGCCT +
Preference number: 3 (lower is better)
Translates to: FSGDVVSPCWLG*SLFPDLVIHLP
Trigger: AGGCAGGTGGATCACAAGGTCAGGAAATAGAGACCATCCTAGCCAACATGGTGAAACCACATCTCCACTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR-3UTR CAA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGTTCAATCCATTTTCTTaGCAGTTCTTGTTTCACAGC +
Preference number: 3 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLFNPFS*QFLFHS
Trigger: GCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAA...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR TCA 72 bp CACATCCTTAATAGGTTTTGCTATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACA +
Preference number: 3 (lower is better)
Translates to: HILNRFCYMLLL*RFNLASGCRCT
Trigger: TGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGAAGTGTCATGTCCCTTTaGCGCCAATTCTCGGATTCT +
Preference number: 3 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGSVMSL*RQFSDS
Trigger: AGAATCCGAGAATTGGCGCAAAAGGGACATGACACT...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR GCA 72 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTaGTCCAGCAGTACTGTTTCCCTAGATTGGTCAAGA +
Preference number: 3 (lower is better)
Translates to: FLCSSCFTALKG*SSSTVSLDWSR
Trigger: TCTTGACCAATCTAGGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341455.10
3UTR-3UTR CAA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTGATGCCACCTCAACTTaGACTCCGTTTCTTGATGAG +
Preference number: 3 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGDATST*TPFLDE
Trigger: CTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATC...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR GCA 72 bp TGTTTTTGCTTAAGTATGTCTTCTTCATACTGTTTCTaGATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCC +
Preference number: 3 (lower is better)
Translates to: CFCLSMSSSYCF*ISSRSCAKRSS
Trigger: GGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATATGAATCAAAGTGCATaGCCCATCTGTCATGTTCCT +
Preference number: 3 (lower is better)
Translates to: SSAEISGDEQFVMSLSINMNQSA*PICHVP
Trigger: AGGAACATGACAGATGGGCAATGCACTTTGATTCAT...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCTTCTTCCTTCTTTCTTaGCTCTTCCTCCAGTTGTTT +
Preference number: 3 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVFFLLS*LFLQLF
Trigger: AAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAA...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTAGTGTCATGTCCCTTTaGCGCCAATTCTCGGATTCT +
Preference number: 3 (lower is better)
Translates to: VICLHTSILLRSRRIHICSVMSL*RQFSDS
Trigger: AGAATCCGAGAATTGGCGCAAAAGGGACATGACACT...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp CCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 3 (lower is better)
Translates to: PPFHSQSGKEIYFLGLQSYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...TGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR TCA 72 bp GGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATGAAGACAGTCTTTATC +
Preference number: 3 (lower is better)
Translates to: GVSSLLHIRGCR*NLFLDMKTVFI
Trigger: GATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422788.5
ENST00000434467.5
3UTR-3UTR CAA 90 bp TCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 3 (lower is better)
Translates to: SVVVGLVLDTPNCSSCFQECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...CTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp CTTTTTGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 3 (lower is better)
Translates to: LFASFPFSVRERDLFPWFYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...AAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp TCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 3 (lower is better)
Translates to: SVRERDLFPWFTVIKICCTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...ACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp CATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 3 (lower is better)
Translates to: HSQSGKEIYFLGLQSSKSTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...AGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR CCA 72 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTaGTCTTGTGTTAGACACACCAAACTGCTCTTCATG +
Preference number: 3 (lower is better)
Translates to: FPWFTVIKICCS*SCVRHTKLLFM
Trigger: CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp AGAACAGCTGAGATTGAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGTTTTCTTTGCAGTTCTaGTTTCACAGCACTGAAAGG +
Preference number: 3 (lower is better)
Translates to: RTAEIENQDNSLMNQSALFSLQF*FHSTER
Trigger: CCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAA...CAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
3UTR-3UTR CAA 90 bp ATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 3 (lower is better)
Translates to: IKICCSWSCVRHTKLLFMECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp TCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 3 (lower is better)
Translates to: SGKEIYFLGLQSSKSVVVTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...AACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR CCA 72 bp TTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTaGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCT +
Preference number: 3 (lower is better)
Translates to: FPFSVRERDLFP*FTVIKICCSWS
Trigger: AGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp CATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 3 (lower is better)
Translates to: HSQSGKEIYFLGLQSSKSYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...AGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
3UTR-3UTR CAA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 3 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CCA 90 bp AGTAAAAGCTTCCTGAGGCCTCACCAGAAGCCGAGGAGATGCTGGTACCATGCTCCCCAGTGTTGGAGGTaGGGCCTAAGGGGAGGTGTT +
Preference number: 4 (lower is better)
Translates to: SKSFLRPHQKPRRCWYHAPQCWR*GLRGGV
Trigger: AACACCTCCCCTTAGGCCCCACCTCCAACACTGGGG...AGCATGGTACCAGCATCTCCTCGGCTTCTGGTGAGGCCTCAGGAAGCTTTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp AGTAAAAGCTTCCTGAGGCCTCACCAGAAGCCGAGGAGATGCTGGTACCATGCTCCCAAGTTCATGGCCTaGCCTCGCACTCTCTCCACA +
Preference number: 4 (lower is better)
Translates to: SKSFLRPHQKPRRCWYHAPKFMA*PRTLST
Trigger: TGTGGAGAGAGTGCGAGGTCAGGCCATGAACTTGGG...AGCATGGTACCAGCATCTCCTCGGCTTCTGGTGAGGCCTCAGGAAGCTTTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGTGCCAGTTCCTGTaGTCGCTGCATTGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLLCQFL*SLHCLE
Trigger: TTCCAGACAATGCAGCGAGCACAGGAACTGGCACAG...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGATATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRYMLLL*RFNLAS
Trigger: GGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATA...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGACAGCACTGAAAGGGTaGTCCAGCAGTACTGTTTCC +
Preference number: 4 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLTALKG*SSSTVS
Trigger: GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGT...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCTGTGCCAGTTCCTGTaGTCGCTGCATTGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHLCQFL*SLHCLE
Trigger: TTCCAGACAATGCAGCGAGCACAGGAACTGGCACAG...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp CTGTCAGTTCACATGAGAGCTGGTTGTGTAAAAGAGCCTGGCATCTCTCTTGCCCTGAGATGGTGCCATTaGACTCCAGCTTGGGCAACA +
Preference number: 4 (lower is better)
Translates to: LSVHMRAGCVKEPGISLALRWCH*TPAWAT
Trigger: TGTTGCCCAAGCTGGAGTGCAATGGCACCATCTCAG...GGCAAGAGAGATGCCAGGCTCTTTTACACAACCAGCTCTCATGTGAACTGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
3UTR CAA 72 bp CACAGTCTTGTGAATTTTGGTACTGAGGGTCCTGGGTaGAAGGCCCAGACAATGGTGCATCGGGATCAAGGT +
Preference number: 4 (lower is better)
Translates to: HSLVNFGTEGPG*KAQTMVHRDQG
Trigger: ACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGTCTCGTTCCTCAATCTaGGCTGGGTCCAAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: LCSCFSLCASSCARCIVWSRSSI*AGSKRA
Trigger: TGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGA...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGGAAATGCCTCTGTTTTaGGAGAGGTGCCCAGGATTA +
Preference number: 4 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLEMPLF*ERCPGL
Trigger: TAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTC...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGATTGGCCACAGTCTTGTaGATTTTGGTACTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRLATVL*ILVLRV
Trigger: GACCCTCAGTACCAAAATTCACAAGACTGTGGCCAA...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATTTGGCCACAGTCTTGTaGATTTTGGTACTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDLATVL*ILVLRV
Trigger: GACCCTCAGTACCAAAATTCACAAGACTGTGGCCAA...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGATTCCTCAATCTGAGCTaGGTCCAAGAGAGCAGTCAT +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRFLNLS*VQESSH
Trigger: ATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAA...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAAGGTTGTTTGTGTGTTaGCTGAGAGAACAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSRLFVC*LREQLR
Trigger: TCTCAGCTGTTCTCTCAGTCAACACACAAACAACCT...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGTGTGAATTTTGGTACTaGGGGTCCTGGGTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: LCSCFSLCASSCARCIVWCEFWY*GSWVEG
Trigger: GCCTTCAACCCAGGACCCTCAGTACCAAAATTCACA...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTGTAGGATTACAGGCATaGGCCCACCGCAGTTGGCCA +
Preference number: 4 (lower is better)
Translates to: CLLSILSQGKRSISLVYSVGLQA*AHRSWP
Trigger: TGGCCAACTGCGGTGGGCTCATGCCTGTAATCCTAC...ACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAGTGTCATGTCCCTTTTaGGCCAATTCTCGGATTCTT +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSVSCPF*ANSRIL
Trigger: AAGAATCCGAGAATTGGCGCAAAAGGGACATGACAC...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCCTTTCCAACTCCTTTTaGTTCTGGAGAAGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPLSNSF*FWRRPC
Trigger: ACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAG...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCTTTCCCCCAGAGTACTaGATATATCAGCTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPFPPEY*IYQLVS
Trigger: GGAAACCAGCTGATATATTCAGTACTCTGGGGGAAA...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCACATCAGCCAGCTCCTaGGTGTCAGGAGAGACACAG +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVTSASS*VSGETQ
Trigger: CTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGT...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTGTGTACAAACACTGCTaGCATCAGCCAGCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVVYKHC*HQPAPE
Trigger: CTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACAC...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATGCTCTTCTTCCTTTTTaGCTAGATGCCACCTCAACT +
Preference number: 4 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHALLPF*LDATST
Trigger: AGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGC...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCGCTCTTCTTCCTTTTTaGCTAGATGCCACCTCAACT +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPALLPF*LDATST
Trigger: AGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGC...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCACCTTTCCTTGCTGAATaGATGAATATTCAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSPFLAE*MNIQRL
Trigger: GAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGG...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AGTAAAAGCTTCCTGAGGCCTCACCAGAAGCCGAGGAGATGCTGGTACCATGCTCTTCAAATCTCATGTTaGAATGTGATTCCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: SKSFLRPHQKPRRCWYHALQISC*NVIPQC
Trigger: ACACTGGGGAATCACATTTCAACATGAGATTTGAAG...AGCATGGTACCAGCATCTCCTCGGCTTCTGGTGAGGCCTCAGGAAGCTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGAGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTCCAGTTGTTTCTTCCTaGGCTTCTCTTCTACCTGGG +
Preference number: 4 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSPVVSS*ASLLPG
Trigger: CCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGG...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341455.10
CDS-3UTR GCA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGAAGTCCCTTAAGGATTaGTTGCTGTCGATCCCTATT +
Preference number: 4 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLKSLKD*LLSIPI
Trigger: AATAGGGATCGACAGCAAGCAATCCTTAAGGGACTT...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACCTTGTGTACGTCGGTTaGCGCCGCCGCTCAGCAAGC +
Preference number: 4 (lower is better)
Translates to: FPWFTVIKICCSWSCVRHLVYVG*RRRSAS
Trigger: GCTTGCTGAGCGGCGGCGGCAACCGACGTACACAAG...GTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439445.5
CDS-3UTR GCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGAGAGACTGTGATAGAATaGTTGAAGAGCCTAGATTGG +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRETVIE*LKSLDW
Trigger: CCAATCTAGGCTCTTCAAGCATTCTATCACAGTCTC...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR CCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAGTTAGGATTAAGAAGTaGATCCCTGACACAGTCAGA +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSVRIKK*IPDTVR
Trigger: TCTGACTGTGTCAGGGATCCACTTCTTAATCCTAAC...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTAATGCCCCATCAGCTTaGACCACCATAACCTGGCTA +
Preference number: 4 (lower is better)
Translates to: DALIVFVVVCLVPQSELGNAPSA*TTITWL
Trigger: TAGCCAGGTTATGGTGGTCCAAGCTGATGGGGCATT...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTATATGCTCCTCCTCTaGAGGTTCAACCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVYMLLL*RFNLAS
Trigger: GGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATA...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAGAGATGAACAATTTGTaGTGTCCCTCTCCATTAATG +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSEMNNL*CPSPLM
Trigger: CATTAATGGAGAGGGACATCACAAATTGTTCATCTC...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCCGAAATCTCAGGAGATaGACAATTTGTGATGTCCCT +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPRNLRR*TICDVP
Trigger: AGGGACATCACAAATTGTTCATCTCCTGAGATTTCG...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCCTGGCTCCTTTATCCTaGGTTAGTTCTTGCTTGTTT +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPLAPLS*VSSCLF
Trigger: AAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAG...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCATAGAGTTTCCTCTAAAGTCTaGCTAGCTCTAAGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: SSSVSFLNLSWVQESSHRVSSKV*LALSCE
Trigger: TTCACAACTTAGAGCTAGTCAGACTTTAGAGGAAAC...TCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR GCA 90 bp CTGTCAGTTCACATGAGAGCTGGTTGTGTAAAAGAGCCTGGCATCTCTCTTGCCGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: LSVHMRAGCVKEPGISLAVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...GGCAAGAGAGATGCCAGGCTCTTTTACACAACCAGCTCTCATGTGAACTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGTCTTCATACTGTTTCTaGATCTCTTCACGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLSSYCF*ISSRSC
Trigger: ACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGA...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTAGGCCCAGACAATGGTaGATCGGGATCAAGGTAATA +
Preference number: 4 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSRPRQW*IGIKVI
Trigger: TATTACCTTGATCCCGATGCACCATTGTCTGGGCCT...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATTCCTCTATTTTTCTTTaGCGGTCATCTTCTATTTGC +
Preference number: 4 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDSSIFL*RSSSIC
Trigger: GCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGA...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATGTGTACAAACACTGCTaGCATCAGCCAGCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: SSAEISGDEQFVMSLSINVYKHC*HQPAPE
Trigger: CTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACAC...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGAGCCCTGTCTCAGTTCTaGAAGTCCCTTAAGGATTGC +
Preference number: 4 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGALSQF*KSLKDC
Trigger: GCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGC...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGATACAGTTGAGCCAGTaGGCACATTTTATAATTTGG +
Preference number: 4 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLIQLSQ*AHFIIW
Trigger: CCAAATTATAAAATGTGCTCACTGGCTCAACTGTAT...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCGGCAGGAGAATCACTTaGACCCAGCAAGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: DVFTVFLVFCILGVAGEIGRRIT*TQQAEV
Trigger: AACCTCTGCTTGCTGGGTTCAAGTGATTCTCCTGCC...GATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCACAGCACTGAAAGGGTaGTCCAGCAGTACTGTTTCC +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVTALKG*SSSTVS
Trigger: GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGT...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCAGCTAAAGGCAGGAGACTACTTTCCAACTCCTTTTGCTTCTGGAGAAGGCCCTCTTCATACTGTTTCTaGATCTCTTCACGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: SAKGRRLLSNSFCFWRRPSSYCF*ISSRSC
Trigger: ACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGA...GGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAAAATTTCTGGTGAAATaGCTCTGTTTTGAGAGAGGT +
Preference number: 4 (lower is better)
Translates to: FVVVCLVPQSELGPREQSKFLVK*LCFERG
Trigger: ACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTT...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp GTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCTCTCATCTCCCAAGTTCATaGCCTGACCTCGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: VFTVFLVFCILGVAGEISHLPSS*PDLALS
Trigger: AGAGAGTGCGAGGTCAGGCCATGAACTTGGGAGATG...AGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CCA 90 bp GTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCTCTTTCTTTTGCCATCTCCCAAGTTCATaGCCTGACCTCGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: VFLVFCILGVAGEISFFCHLPSS*PDLALS
Trigger: AGAGAGTGCGAGGTCAGGCCATGAACTTGGGAGATG...GCAAAAGAAAGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000439445.5
CDS-3UTR CCA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATAATAGCTGTCGTTTTTaGCCACAGTCTTGTGAATTT +
Preference number: 4 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDNSCRF*PQSCEF
Trigger: AAATTCACAAGACTGTGGCCAAAAACGACAGCTATT...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGAATAGCTGTCGTTTTTaGCCACAGTCTTGTGAATTT +
Preference number: 4 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLNSCRF*PQSCEF
Trigger: AAATTCACAAGACTGTGGCCAAAAACGACAGCTATT...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCCTTGTTTCACAGCACTaGAAGGGTGCTCCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCLVSQH*KGAPAV
Trigger: TACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAG...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTCTTGTTTCACAGCACTaGAAGGGTGCTCCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGLVSQH*KGAPAV
Trigger: TACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAG...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATTCCTCTATTTTTCTTTaGCGGTCATCTTCTATTTGC +
Preference number: 4 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHSSIFL*RSSSIC
Trigger: GCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGA...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATGTTTCTCTATTCTTGTaGACTGATTACACTGGTCAT +
Preference number: 4 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHVSLFL*TDYTGH
Trigger: ATGACCAGTGTAATCAGTTCACAAGAATAGAGAAAC...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCGAAATGCCTCTGTTTTaGGAGAGGTGCCCAGGATTA +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVEMPLF*ERCPGL
Trigger: TAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTC...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTCACCCTTTGGCCCTGTCTCAGTTCTaGAAGTCCCTTAAGGATTGC +
Preference number: 4 (lower is better)
Translates to: NSLMNQSALPICHVPHPLALSQF*KSLKDC
Trigger: GCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGC...CAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACCCCAAGTTCATGGCCTaGCCTCGCACTCTCTCCACA +
Preference number: 4 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDPKFMA*PRTLST
Trigger: TGTGGAGAGAGTGCGAGGTCAGGCCATGAACTTGGG...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTTCCTTTTTGACTAGATaGCACCTCAACTTTGACTCC +
Preference number: 4 (lower is better)
Translates to: DALIVFVVVCLVPQSELGSFLTR*HLNFDS
Trigger: GGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGA...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTGCTCTAAGTTGTGAATaGCCCATCAGCTTGGACCAC +
Preference number: 4 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGALSCE*PISLDH
Trigger: GTGGTCCAAGCTGATGGGGCATTCACAACTTAGAGC...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR CCA 90 bp CTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGCATCTCCCAAGTTCATaGCCTGACCTCGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: LSQGKRSISLVYSHQNLLHLPSS*PDLALS
Trigger: AGAGAGTGCGAGGTCAGGCCATGAACTTGGGAGATG...CAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTA +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVSEGST*LPVVGV
Trigger: TACACCTACAACCGGAAGCCAGGTTGAACCTTCAGA...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp GATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCCTAAGGGGAGGTGTTTaGGTCACAGGAGATGAATCC +
Preference number: 4 (lower is better)
Translates to: DVFTVFLVFCILGVAGEILRGGV*VTGDES
Trigger: GGATTCATCTCCTGTGACCCAAACACCTCCCCTTAG...GATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp AGAGGCTCTTCTTCCTTTTTGACTAGATGCCACCTCAACTTTGACTCCGTTTCTATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 4 (lower is better)
Translates to: RGSSSFLTRCHLNFDSVSIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTTCTTCTCTCTGCTTTTaGAGCTGTTTAGGGTACTTT +
Preference number: 4 (lower is better)
Translates to: DALIVFVVVCLVPQSELGSSLCF*SCLGYF
Trigger: AAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGA...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp ATCAGTCTAGAAGTGTCATGTCCCTTTTGCGCCAATTCTCGGATTCTTTGTTCTATGCCACCTCAACTTTaGCTCCGTTTCTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: ISLEVSCPFCANSRILCSMPPQL*LRFLMR
Trigger: TCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCAT...AGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGTTAGGAATGCCACCTCAACTTTaGCTCCGTTTCTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: ESPLRIACCRSLFFTMLGMPPQL*LRFLMR
Trigger: TCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCAT...TCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAATGTGAATTTTGGTACTaGGGGTCCTGGGTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: VSSCLFFLVLNCPISSAECEFWY*GSWVEG
Trigger: GCCTTCAACCCAGGACCCTCAGTACCAAAATTCACA...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGGAGATGAATCCCTCATaGATGGCTTGGTGCCATCCC +
Preference number: 4 (lower is better)
Translates to: FTVIKICCSWSCVRHTKLEMNPS*MAWCHP
Trigger: GGGATGGCACCAAGCCATTCATGAGGGATTCATCTC...CAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR GCA 90 bp TCTTCTTCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: SSSYCFCISSRSCAKRSSLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...GGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATTTTAAGTCATCTGTTTaGACACCAGTATCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHFKSSV*TPVSFL
Trigger: TAAGAAGGATACTGGTGTGCAAACAGATGACTTAAA...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTAAGTCCCTTAAGGATTaGTTGCTGTCGATCCCTATT +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVKSLKD*LLSIPI
Trigger: AATAGGGATCGACAGCAAGCAATCCTTAAGGGACTT...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACGCTATCTCAGCTCACTaGAATCTCCGCCTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDAISAH*NLRLPG
Trigger: ACCTGGGAGGCGGAGATTGCAGTGAGCTGAGATAGC...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp AGAACAGCTGAGATTGAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCATCTCCCAAGTTCATaGCCTGACCTCGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: RTAEIENQDNSLMNQSALHLPSS*PDLALS
Trigger: AGAGAGTGCGAGGTCAGGCCATGAACTTGGGAGATG...CAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341455.10
CDS-3UTR CCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCTGAAGGTTCAACCTaGCTTCCGGTTGTAGGTGTA +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCSEGST*LPVVGV
Trigger: TACACCTACAACCGGAAGCCAGGTTGAACCTTCAGA...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATTTCCTCAATCTGAGCTaGGTCCAAGAGAGCAGTCAT +
Preference number: 4 (lower is better)
Translates to: SSAEISGDEQFVMSLSINFLNLS*VQESSH
Trigger: ATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAA...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTAACTCCTTTTGCTTCTaGAGAAGGCCCTGTCTCAGT +
Preference number: 4 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGNSFCF*RRPCLS
Trigger: ACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTT...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp CCTACTAGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAAAAGTAAGTTGGGCATaGTGGCAGGTGCCTGTAATC +
Preference number: 4 (lower is better)
Translates to: PTRDVFTVFLVFCILGVAKVSWA*WQVPVI
Trigger: GATTACAGGCACCTGCCACCATGCCCAACTTACTTT...TGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCTAGTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTGGACCACCATAACCTaGCTACGAGACTGTGATAGA +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCWTTIT*LRDCDR
Trigger: TCTATCACAGTCTCGTAGCCAGGTTATGGTGGTCCA...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR TCA 90 bp TGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 4 (lower is better)
Translates to: CLLSILSQGKRSISLVYSIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...ACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422788.5
ENST00000434467.5
CDS-3UTR TCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCAGGTTGTTTGTGTGTTaGCTGAGAGAACAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCRLFVC*LREQLR
Trigger: TCTCAGCTGTTCTCTCAGTCAACACACAAACAACCT...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCCGAAATCTCAGGAGATaGACAATTTGTGATGTCCCT +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVRNLRR*TICDVP
Trigger: AGGGACATCACAAATTGTTCATCTCCTGAGATTTCG...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCCTGGCTCCTTTATCCTaGGTTAGTTCTTGCTTGTTT +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVLAPLS*VSSCLF
Trigger: AAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAG...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCTTCTTCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTATTCTTGTGAACTaGTTACACTGGTCATTACAC +
Preference number: 4 (lower is better)
Translates to: SSSYCFCISSRSCAKRSSSILVN*LHWSLH
Trigger: GTGTAATGACCAGTGTAATCAGTTCACAAGAATAGA...GGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTAGTTCCTGTGCTCGCTaGATTGTCTGGAATAGCTCA +
Preference number: 4 (lower is better)
Translates to: ENQDNSLMNQSALPICHVSSCAR*IVWNSS
Trigger: TGAGCTATTCCAGACAATGCAGCGAGCACAGGAACT...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp AACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTCACCCTTTGGTGTCATGTCCCTTTTaGGCCAATTCTCGGATTCTT +
Preference number: 4 (lower is better)
Translates to: NSLMNQSALPICHVPHPLVSCPF*ANSRIL
Trigger: AAGAATCCGAGAATTGGCGCAAAAGGGACATGACAC...CAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAAAGGCCCAGACAATGGTaGATCGGGATCAAGGTAATA +
Preference number: 4 (lower is better)
Translates to: VSSCLFFLVLNCPISSAERPRQW*IGIKVI
Trigger: TATTACCTTGATCCCGATGCACCATTGTCTGGGCCT...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAACTTTCCAACTCCTTTTaGTTCTGGAGAAGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: VSSCLFFLVLNCPISSAELSNSF*FWRRPC
Trigger: ACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAG...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACGCCTGGCATCTCTCTTaGCATGTAAAATGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: FPWFTVIKICCSWSCVRHAWHLS*HVKCLL
Trigger: GAGCAGGCATTTTACATGGCAAGAGAGATGCCAGGC...GTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp TCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGAGTTCACATGAGAGCTaGTTGTGTAAAAGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: SVVVGLVLDTPNCSSCFQSSHES*LCKRAW
Trigger: CCAGGCTCTTTTACACAACCAGCTCTCATGTGAACT...CTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp GGAGATGTGGTTTCACCATGTTGGCTAGGATGGTCTCTATTTCCTGACCTTGTGAAGCACAAAATATTCTaGTCATTTCCAAGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: GDVVSPCWLGWSLFPDLVKHKIF*SFPSSS
Trigger: GGAACTACTTGGAAATGACCAGAATATTTTGTGCTT...CACAAGGTCAGGAAATAGAGACCATCCTAGCCAACATGGTGAAACCACATCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp GATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCCCATGTTGGCTAGGATaGTCTCTATTTCCTGACCTT +
Preference number: 4 (lower is better)
Translates to: DVFTVFLVFCILGVAGEIPCWLG*SLFPDL
Trigger: AAGGTCAGGAAATAGAGACCATCCTAGCCAACATGG...GATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTCTATTCTTGTGAACTaGTTACACTGGTCATTACAC +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVSILVN*LHWSLH
Trigger: GTGTAATGACCAGTGTAATCAGTTCACAAGAATAGA...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATCCTTTCCTTGCTGAATaGATGAATATTCAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: SSAEISGDEQFVMSLSINPFLAE*MNIQRL
Trigger: GAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGG...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCGAGACCTTTCCTTGCTaGATGAATGAATATTCAGAG +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVETFPC*MNEYSE
Trigger: CTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTC...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTATACAGTTGAGCCAGTaGGCACATTTTATAATTTGG +
Preference number: 4 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVIQLSQ*AHFIIW
Trigger: CCAAATTATAAAATGTGCTCACTGGCTCAACTGTAT...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACTTGGGTCACAGGAGATaGATCCCTCATGAATGGCTT +
Preference number: 4 (lower is better)
Translates to: FPWFTVIKICCSWSCVRHLGHRR*IPHEWL
Trigger: AAGCCATTCATGAGGGATTCATCTCCTGTGACCCAA...GTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTATGGTCTCTATTTCCTaGCCTTGTGATCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVMVSIS*PCDPPA
Trigger: GGCAGGTGGATCACAAGGTCAGGAAATAGAGACCAT...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp AGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATTAGGGGTTGCAGGTaGAATCTCTTTCTTTTGCCT +
Preference number: 4 (lower is better)
Translates to: RDVFTVFLVFCILGVAGEIRGCR*NLFLLP
Trigger: AGGCAAAAGAAAGAGATTTCACCTGCAACCCCTAAT...TTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000439445.5
CDS-3UTR GCA 90 bp TGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTTTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: CLLSILSQGKRSISLVYSLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...ACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp ATCAGTCTAGAAGTGTCATGTCCCTTTTGCGCCAATTCTCGGATTCTTTGTTCTATAGGTTTTGCTATATaGTCCTCCTCTGAAGGTTCA +
Preference number: 4 (lower is better)
Translates to: ISLEVSCPFCANSRILCSIGFAI*SSSEGS
Trigger: TGAACCTTCAGAGGAGGAGCATATAGCAAAACCTAT...AGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCTTTTTGACTAGATaGCACCTCAACTTTGACTCC +
Preference number: 4 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCSFLTR*HLNFDS
Trigger: GGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGA...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTACTGAATATATCAGCTaGTTTCCATTCATTCTCTAC +
Preference number: 4 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSTEYIS*FPFILY
Trigger: GTAGAGAATGAATGGAAACCAGCTGATATATTCAGT...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341455.10
CDS-3UTR CCA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTAACTCCTTTTGCTTCTaGAGAAGGCCCTGTCTCAGT +
Preference number: 4 (lower is better)
Translates to: VICLHTSILLRSRRIHICNSFCF*RRPCLS
Trigger: ACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTT...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp AATCAAATAGCTGTCGTTTTTGGCCACAGTCTTGTGAATTTTGGTACTGAGGGTGCAGTGATGGCTTTCTaGTGCTCTAATTGTTTTTGT +
Preference number: 4 (lower is better)
Translates to: NQIAVVFGHSLVNFGTEGAVMAF*CSNCFC
Trigger: ACAAAAACAATTAGAGCATCAGAAAGCCATCACTGC...ACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000341455.10
CDS-3UTR TCA 90 bp GTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCTCTCATCTATTTATTGAGTaGTATTTCGGGTACTCCAGC +
Preference number: 4 (lower is better)
Translates to: VFTVFLVFCILGVAGEISHLFIE*YFGYSS
Trigger: GCTGGAGTACCCGAAATATCACTCAATAAATAGATG...AGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR TCA 90 bp TTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACTCTCATGTTGAAATGTaGTTCCCCAGTGTTGGAGGT +
Preference number: 4 (lower is better)
Translates to: FPWFTVIKICCSWSCVRHSHVEM*FPSVGG
Trigger: ACCTCCAACACTGGGGAATCACATTTCAACATGAGA...GTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTGCGCTTCTCTTCTaGTGCTCTAATTGTTTTTGT +
Preference number: 4 (lower is better)
Translates to: ENQDNSLMNQSALPICHVPALLF*CSNCFC
Trigger: ACAAAAACAATTAGAGCATCAGAAGAGAAGCGCAGG...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR GCA 90 bp ATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: ICCSWSCVRHTKLLFMFSVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...TGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp TCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTGTGTTTCTAGTCTTCTaGATATTAGGGGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: SKSVVVGLVLDTPNCSSCVFLVF*ILGVAG
Trigger: ACCTGCAACCCCTAATATGCAGAAGACTAGAAACAC...ACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp CCTACTAGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCATTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: PTRDVFTVFLVFCILGVALDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...TGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCTAGTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp AACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTCACCCTTTGATAGGTTTTGCTATATaGTCCTCCTCTGAAGGTTCA +
Preference number: 4 (lower is better)
Translates to: NSLMNQSALPICHVPHPLIGFAI*SSSEGS
Trigger: TGAACCTTCAGAGGAGGAGCATATAGCAAAACCTAT...CAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCAAAATCTGTTGTAGTTaGTCTTGTGTTAGACACACC +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVKICCS*SCVRHT
Trigger: GGTGTGTCTAACACAAGACCAACTACAACAGATTTT...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp CTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGGTACATCATCCAAACTaGGTTCTATCCACAGACAAG +
Preference number: 4 (lower is better)
Translates to: LSQGKRSISLVYSHQNLLVHHPN*VLSTDK
Trigger: CTTGTCTGTGGATAGAACCCAGTTTGGATGATGTAC...CAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CCA 90 bp CATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTATACAAAAAGTAAGTTaGGCATGGTGGCAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: HSQSGKEIYFLGLQSSKSIQKVS*AWWQVP
Trigger: AGGCACCTGCCACCATGCCCAACTTACTTTTTGTAT...AGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp TTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGATTAGGGGTTGCAGGTaGAATCTCTTTCTGGATATG +
Preference number: 4 (lower is better)
Translates to: FTVIKICCSWSCVRHTKLIRGCR*NLFLDM
Trigger: CATATCCAGAAAGAGATTTCACCTGCAACCCCTAAT...CAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422788.5
ENST00000434467.5
CDS-3UTR TCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAATCTTCTCTCTGCTTTTaGAGCTGTTTAGGGTACTTT +
Preference number: 4 (lower is better)
Translates to: VSSCLFFLVLNCPISSAESSLCF*SCLGYF
Trigger: AAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGA...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TCGATCCCTATTTTTCACCATGTTAGGATTAAGAAGTGGATCCCTGACACAGTCTTTAATGAATCAAAGTaGATTGCCCATCTGTCATGT +
Preference number: 4 (lower is better)
Translates to: SIPIFHHVRIKKWIPDTVFNESK*IAHLSC
Trigger: ACATGACAGATGGGCAATGCACTTTGATTCATTAAA...GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGTCTATGCCCAGTTTTTaGCTCCTTTCCATTCTCAGT +
Preference number: 4 (lower is better)
Translates to: FTVIKICCSWSCVRHTKLSMPSF*LLSILS
Trigger: ACTGAGAATGGAAAGGAGGCAAAAACTGGGCATAGA...CAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422788.5
CDS-3UTR CCA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTGTTAGGATTAAGAAGTaGATCCCTGACACAGTCAGA +
Preference number: 4 (lower is better)
Translates to: VICLHTSILLRSRRIHICVRIKK*IPDTVR
Trigger: TCTGACTGTGTCAGGGATCCACTTCTTAATCCTAAC...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAATTGTGTAAAAGAGCCTaGCATCTCTCTTGCCATGTA +
Preference number: 4 (lower is better)
Translates to: FPFSVRERDLFPWFTVIKLCKRA*HLSCHV
Trigger: TACATGGCAAGAGAGATGCCAGGCTCTTTTACACAA...TTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp CATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTGGTTTCACCATGTTaGCTAGGATGGTCTCTATTT +
Preference number: 4 (lower is better)
Translates to: HSQSGKEIYFLGLQSSKSVVSPC*LGWSLF
Trigger: AAATAGAGACCATCCTAGCCAACATGGTGAAACCAC...AGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAAGTTTCTCTATTCTTGTaGACTGATTACACTGGTCAT +
Preference number: 4 (lower is better)
Translates to: VSSCLFFLVLNCPISSAEVSLFL*TDYTGH
Trigger: ATGACCAGTGTAATCAGTTCACAAGAATAGAGAAAC...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTGAGACCTTTCCTTGCTaGATGAATGAATATTCAGAG +
Preference number: 4 (lower is better)
Translates to: VICLHTSILLRSRRIHICETFPC*MNEYSE
Trigger: CTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTC...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATTTTAATGAATCAAAGTaGATTGCCCATCTGTCATGT +
Preference number: 4 (lower is better)
Translates to: SSAEISGDEQFVMSLSINFNESK*IAHLSC
Trigger: ACATGACAGATGGGCAATGCACTTTGATTCATTAAA...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACCATGCTTGTACAGTCTaGAAAACTAGCTCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDHACTV*KTSSFL
Trigger: GAGGAAAGAGCTAGTTTTGCAGACTGTACAAGCATG...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATTTTCTTTTTCTAAGCTaGCTCCTTTATCCTGAGTTA +
Preference number: 4 (lower is better)
Translates to: SSAEISGDEQFVMSLSINFLFLS*LLYPEL
Trigger: TAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAA...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CCA 90 bp TCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGCTTGATGATACAGTTTaGATATTTGTCCCCTTCAAA +
Preference number: 4 (lower is better)
Translates to: SVVVGLVLDTPNCSSCFQLDDTV*IFVPFK
Trigger: TTTGAAGGGGACAAATATCCAAACTGTATCATCAAG...CTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR TCA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTCATCTATTTATTGAGTaGTATTTCGGGTACTCCAGC +
Preference number: 4 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVHLFIE*YFGYSS
Trigger: GCTGGAGTACCCGAAATATCACTCAATAAATAGATG...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp TCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTTTAGACACACCAAACTaGTCTTCATGTTTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: SGKEIYFLGLQSSKSVVVLDTPN*SSCFQL
Trigger: CAGCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAA...AACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR GCA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTTTTAAGTCATCTGTTTaGACACCAGTATCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: ENQDNSLMNQSALPICHVFKSSV*TPVSFL
Trigger: TAAGAAGGATACTGGTGTGCAAACAGATGACTTAAA...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR GCA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTCATGAATTGTCTCTATaGCCAGTTTTTGCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVHELSL*PVFASF
Trigger: AAAGGAGGCAAAAACTGGGCATAGAGACAATTCATG...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422788.5
CDS-3UTR CCA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTTTTCTTTTTCTAAGCTaGCTCCTTTATCCTGAGTTA +
Preference number: 4 (lower is better)
Translates to: ENQDNSLMNQSALPICHVFLFLS*LLYPEL
Trigger: TAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAA...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR TCA 90 bp GAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTTCCCATCTATTTATTaGGTGATATTTCGGGTACTC +
Preference number: 4 (lower is better)
Translates to: ERDLFPWFTVIKICCSWSFPSIY*VIFRVL
Trigger: GAGTACCCGAAATATCACTCAATAAATAGATGGGAA...AGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
3UTR CAA 72 bp TTAGAATGTGCCCAGTTTTTGTTCTTAAAGGACATTTaGCAATCTTGGCCTTATTTCCCATCAAAAATCCAA +
Preference number: 4 (lower is better)
Translates to: LECAQFLFLKDI*QSWPYFPSKIQ
Trigger: TTGGATTTTTGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAACTGGGCACATTCTAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000422788.5
CDS-3UTR GCA 90 bp GAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTCAGACATTTGGTATTaGATTTTGATGTGGAATGTG +
Preference number: 4 (lower is better)
Translates to: ERDLFPWFTVIKICCSWSSDIWY*ILMWNV
Trigger: CACATTCCACATCAAAATGCAATACCAAATGTCTGA...AGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CCA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTACTGAATATATCAGCTaGTTTCCATTCATTCTCTAC +
Preference number: 4 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVTEYIS*FPFILY
Trigger: GTAGAGAATGAATGGAAACCAGCTGATATATTCAGT...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGAGTGTCATGTCCCTTTaGCGCCAATTCTCGGATTCT +
Preference number: 5 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLSVMSL*RQFSDS
Trigger: AGAATCCGAGAATTGGCGCAAAAGGGACATGACACT...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATCGGGATAGTGTCATGTCCCTTTaGCGCCAATTCTCGGATTCT +
Preference number: 5 (lower is better)
Translates to: NFGTEGPGLKAQTMVHRDSVMSL*RQFSDS
Trigger: AGAATCCGAGAATTGGCGCAAAAGGGACATGACACT...ATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGGATGCCACCTCAACTTaGACTCCGTTTCTTGATGAG +
Preference number: 5 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLDATST*TPFLDE
Trigger: CTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATC...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGGGCTCTTCTTCCTTTTaGACTAGATGCCACCTCAAC +
Preference number: 5 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLGSSSF*TRCHLN
Trigger: GTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCC...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGCCTGTGCTCGCTGCATaGTCTGGAATAGCTCATTTG +
Preference number: 5 (lower is better)
Translates to: LCSCFSLCASSCARCIVWPVLAA*SGIAHL
Trigger: CAAATGAGCTATTCCAGACAATGCAGCGAGCACAGG...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp ATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGAACGCTCAAGCCCCTaGTGTACGTCGGTTGCCGCC +
Preference number: 5 (lower is better)
Translates to: ICCSWSCVRHTKLLFMFSERSSP*CTSVAA
Trigger: GGCGGCAACCGACGTACACAAGGGGCTTGAGCGTTC...TGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000439445.5
CDS-3UTR CAA 90 bp TTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAACCTTGTGTACGTCGGTaGCCGCCGCCGCTCAGCAAG +
Preference number: 5 (lower is better)
Translates to: FHSQSGKEIYFLGLQSSKPCVRR*PPPLSK
Trigger: CTTGCTGAGCGGCGGCGGCAACCGACGTACACAAGG...TTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439445.5
CDS-3UTR CAA 90 bp TCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTCAGTGTGATTCCCCAGTGTaGGAGGTGGGGCCTAAGGGG +
Preference number: 5 (lower is better)
Translates to: SVVVGLVLDTPNCSSCFQCDSPV*EVGPKG
Trigger: CCCCTTAGGCCCCACCTCCAACACTGGGGAATCACA...CTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp TGCCTCCTTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTGCTGAGATGGTGCCATaGCACTCCAGCTTGGGCAAC +
Preference number: 5 (lower is better)
Translates to: CLLSILSQGKRSISLVYSAEMVP*HSSLGN
Trigger: GTTGCCCAAGCTGGAGTGCAATGGCACCATCTCAGC...ACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTGAATGCCCCATCAGCTaGGACCACCATAACCTGGCT +
Preference number: 5 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVECPIS*DHHNLA
Trigger: AGCCAGGTTATGGTGGTCCAAGCTGATGGGGCATTC...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR CAA 90 bp TGCTCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGATGAATCAAAGTGCATaGCCCATCTGTCATGTTCCT +
Preference number: 5 (lower is better)
Translates to: CSSSEGSTWLPVVGVQTLMNQSA*PICHVP
Trigger: AGGAACATGACAGATGGGCAATGCACTTTGATTCAT...CAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TCCTCCTCTGAAGGTTCAACCTGGCTTCCGGTTGTAGGTGTACAAACACTGCTGTCCCTTAAGGATTGCTaGCTGTCGATCCCTATTTTT +
Preference number: 5 (lower is better)
Translates to: SSSEGSTWLPVVGVQTLLSLKDC*LSIPIF
Trigger: AAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGA...CAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TCTTCTTCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCACTTTCCAACTCCTTTaGCTTCTGGAGAAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: SSSYCFCISSRSCAKRSSTFQLL*LLEKAL
Trigger: CAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGT...GGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 5 (lower is better)
Translates to: LCSCFSLCASSCARCIVWTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CTTGTGAATTTTGGTACTGAGGGTCCTGGGTTGAAGGCCCAGACAATGGTGCATTTCTTCCTTCTTTCTTaGCTCTTCCTCCAGTTGTTT +
Preference number: 5 (lower is better)
Translates to: LVNFGTEGPGLKAQTMVHFFLLS*LFLQLF
Trigger: AAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAA...ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTCCAAGAGAGCAGTCAAATAGCTCATTTGTCTaGAGAGTCATGATTTCTTCC +
Preference number: 5 (lower is better)
Translates to: FVVVCLVPQSELGPREQSNSSFV*RVMISS
Trigger: GGAAGAAATCATGACTCTCAAGACAAATGAGCTATT...TGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGACTGTGATAGAATGCTaGAAGAGCCTAGATTGGTCA +
Preference number: 5 (lower is better)
Translates to: LCSCFSLCASSCARCIVWTVIEC*KSLDWS
Trigger: TGACCAATCTAGGCTCTTCAAGCATTCTATCACAGT...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS TCA 90 bp TCAACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTaGAAGGGTGCTCCAGCAGTACTGTTTCCTAGCTCTTTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: STLQSIFFAVLVSQH*KGAPAVLFPSSFLH
Trigger: GTGGAGGAAAGAGCTAGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000484623.5
CDS-3UTR CAA 90 bp AACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTCACCCTTTGTTGCTCTTCCTCCAGTaGTTTCTTCCTGCGCTTCTC +
Preference number: 5 (lower is better)
Translates to: NSLMNQSALPICHVPHPLLLFLQ*FLPALL
Trigger: GAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAA...CAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CTTTGTTCTTGTTTTAGTCTCTGTGCCAGTTCCTGTGCTCGCTGCATTGTCTGGTTCTTCCTTCTTTCTTaGCTCTTCCTCCAGTTGTTT +
Preference number: 5 (lower is better)
Translates to: LCSCFSLCASSCARCIVWFFLLS*LFLQLF
Trigger: AAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAA...CCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AGTTCTGCCGAAATCTCAGGAGATGAACAATTTGTGATGTCCCTCTCCATTAATACTTTCCAACTCCTTTaGCTTCTGGAGAAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: SSAEISGDEQFVMSLSINTFQLL*LLEKAL
Trigger: CAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGT...ATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS CCA 90 bp TATAGAGAATCAGAACCCACATGCACTGATGGTGGGAATGTAAAATaGTACCACTGCTTTGGAGAAGAGTTTGGTGGTTCCTCAAAATGC +
Preference number: 5 (lower is better)
Translates to: YRESEPTCTDGGNVK*YHCFGEEFGGSSKC
Trigger: GCATTTTGAGGAACCACCAAACTCTTCTCCAAAGCAGTGGTACCATTTTACATTCCCACCATCAGTGCATGTGGGTTCTGATTCTCTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS CCA 90 bp AAGTGTAAAGGACTCGATAAGCATAAGGAAACCTTTTCAGCTTTGTaGGCCATATTGTTTCTGTTGCTAGTCTGGTGTGTGAAGTCAGCC +
Preference number: 5 (lower is better)
Translates to: KCKGLDKHKETFSAL*AILFLLLVWCVKSA
Trigger: GGCTGACTTCACACACCAGACTAGCAACAGAAACAATATGGCCCACAAAGCTGAAAAGGTTTCCTTATGCTTATCGAGTCCTTTACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS-3UTR CAA 90 bp CTCAGTTCTGAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCATGAATCAAAGTGCATaGCCCATCTGTCATGTTCCT +
Preference number: 5 (lower is better)
Translates to: LSSESPLRIACCRSLFFTMNQSA*PICHVP
Trigger: AGGAACATGACAGATGGGCAATGCACTTTGATTCAT...GGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAACCTGTGCTCGCTGCATaGTCTGGAATAGCTCATTTG +
Preference number: 5 (lower is better)
Translates to: VSSCLFFLVLNCPISSAEPVLAA*SGIAHL
Trigger: CAAATGAGCTATTCCAGACAATGCAGCGAGCACAGG...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCGATGCCACCTCAACTTaGACTCCGTTTCTTGATGAG +
Preference number: 5 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCDATST*TPFLDE
Trigger: CTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATC...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AACTCTTCAATCCATTTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCGGCTCTTCTTCCTTTTaGACTAGATGCCACCTCAAC +
Preference number: 5 (lower is better)
Translates to: NSSIHFLCSSCFTALKGCGSSSF*TRCHLN
Trigger: GTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCC...GCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACATGCCTGCTCCCCCTTaGCCTTCCACCGTGAGTAAA +
Preference number: 5 (lower is better)
Translates to: YFLGLQSSKSVVVGLVLDMPAPP*PSTVSK
Trigger: TTTACTCACGGTGGAAGGCAAAGGGGGAGCAGGCAT...GTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp CAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAAGGCAGGAGAATCACTaGAACCCAGCAAGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: QSGKEIYFLGLQSSKSVVRQENH*NPASRG
Trigger: ACCTCTGCTTGCTGGGTTCAAGTGATTCTCCTGCCT...TACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: DALIVFVVVCLVPQSELGYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp TTTCTTTGCAGTTCTTGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTTTTCTTTGCAGTTCTaGTTTCACAGCACTGAAAGG +
Preference number: 5 (lower is better)
Translates to: FLCSSCFTALKGCSSSTVFSLQF*FHSTER
Trigger: CCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAA...AACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GATGCTCTAATTGTTTTTGTCGTCGTCTGTCTCGTTCCTCAATCTGAGCTGGGTTTCAATCCATTTTCTTaGCAGTTCTTGTTTCACAGC +
Preference number: 5 (lower is better)
Translates to: DALIVFVVVCLVPQSELGFNPFS*QFLFHS
Trigger: GCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAA...ACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GTCATCTGTTTGCACACCAGTATCCTTCTTAGAAGTCGTAGAATTCATATATGTTTGCTCTTCCTCCAGTaGTTTCTTCCTGCGCTTCTC +
Preference number: 5 (lower is better)
Translates to: VICLHTSILLRSRRIHICLLFLQ*FLPALL
Trigger: GAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAA...ACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGAGCCTGGCATCTCTCTaGCCATGTAAAATGCCTGCT +
Preference number: 5 (lower is better)
Translates to: EIYFLGLQSSKSVVVGLVSLASL*PCKMPA
Trigger: AGCAGGCATTTTACATGGCAAGAGAGATGCCAGGCT...CACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp TCATACTGTTTCTGCATCTCTTCACGTTCCTGTGCTAAGCGAAGCTCCTCTTCTCTTGAAGAGCCTAGATaGGTCAAGAATTTGATGTTT +
Preference number: 5 (lower is better)
Translates to: SYCFCISSRSCAKRSSSSLEEPR*VKNLMF
Trigger: AAACATCAAATTCTTGACCAATCTAGGCTCTTCAAG...AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS TCA 90 bp CTGGATTTGCCCATGGGATATAGTTTGCTGATCCCTAATGTAAACTaGAACAGATCAGAACAGCCTTACCAAAGCATACGTATGAGAAAC +
Preference number: 5 (lower is better)
Translates to: LDLPMGYSLLIPNVN*NRSEQPYQSIRMRN
Trigger: GTTTCTCATACGTATGCTTTGGTAAGGCTGTTCTGATCTGTTTCAGTTTACATTAGGGATCAGCAAACTATATCCCATGGGCAAATCCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS-3UTR CAA 90 bp CTCAGTTCTGAAAGTCCCTTAAGGATTGCTTGCTGTCGATCCCTATTTTTCACCGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 5 (lower is better)
Translates to: LSSESPLRIACCRSLFFTECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...GGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp CCTACTAGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 5 (lower is better)
Translates to: PTRDVFTVFLVFCILGVATNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...TGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCTAGTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp GTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCTCTACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 5 (lower is better)
Translates to: VFTVFLVFCILGVAGEISTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...AGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp CTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 5 (lower is better)
Translates to: LSQGKRSISLVYSHQNLLTNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...CAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAAACCAACTGGCTTCTTTaGCAAAAGTTTTTCACTCCC +
Preference number: 5 (lower is better)
Translates to: VSSCLFFLVLNCPISSAETNWLL*QKFFTP
Trigger: GGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp ATCAGTCTAGAAGTGTCATGTCCCTTTTGCGCCAATTCTCGGATTCTTTGTTCTAATAGCTCATTTGTCTaGAGAGTCATGATTTCTTCC +
Preference number: 5 (lower is better)
Translates to: ISLEVSCPFCANSRILCSNSSFV*RVMISS
Trigger: GGAAGAAATCATGACTCTCAAGACAAATGAGCTATT...AGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS CCA 90 bp AGAAACTGTGTTTTGAATCCAGAAACGTCAACACATCATCTAAGATaGAAGAGCTTTACCTTTTTGACTAGATGCCACCTCAACTTTGAC +
Preference number: 5 (lower is better)
Translates to: RNCVLNPETSTHHLR*KSFTFLTRCHLNFD
Trigger: GTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGTAAAGCTCTTCCATCTTAGATGATGTGTTGACGTTTCTGGATTCAAAACACAGTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS-3UTR CAA 90 bp AGAGATGTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 5 (lower is better)
Translates to: RDVFTVFLVFCILGVAGEECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...TTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACATCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp GTATTTACGGTGTTTCTAGTCTTCTGCATATTAGGGGTTGCAGGTGAAATCTCTTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: VFTVFLVFCILGVAGEISYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...AGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp AACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCCTCACCCTTTGTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: NSLMNQSALPICHVPHPLYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...CAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AGAACAGCTGAGATTGAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGTCCCTTAAGGATTGCTaGCTGTCGATCCCTATTTTT +
Preference number: 5 (lower is better)
Translates to: RTAEIENQDNSLMNQSALSLKDC*LSIPIF
Trigger: AAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGA...CAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACATCAAGGGCTTAGAGTaGAAGGATAAAGTGGTACAT +
Preference number: 5 (lower is better)
Translates to: GLQSSKSVVVGLVLDTPNIKGLE*KDKVVH
Trigger: ATGTACCACTTTATCCTTCAACTCTAAGCCCTTGAT...GTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp TCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTCCTTCAAATCTCATGTaGAAATGTGATTCCCCAGTG +
Preference number: 5 (lower is better)
Translates to: SVRERDLFPWFTVIKICCPSNLM*KCDSPV
Trigger: CACTGGGGAATCACATTTCAACATGAGATTTGAAGG...ACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS-3UTR CAA 90 bp CTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 5 (lower is better)
Translates to: LSQGKRSISLVYSHQNLLECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...CAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp GTTAGTTCTTGCTTGTTTTTCTTGGTGCTAAACTGTCCAATAAGTTCTGCCGAATTCAATCCATTTTCTTaGCAGTTCTTGTTTCACAGC +
Preference number: 5 (lower is better)
Translates to: VSSCLFFLVLNCPISSAEFNPFS*QFLFHS
Trigger: GCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAA...TTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp GAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGCCCATCTGTCATGTTCTCTATGGCAATTTTTaGCTCACACTGTTTAGATGT +
Preference number: 5 (lower is better)
Translates to: ENQDNSLMNQSALPICHVLYGNF*LTLFRC
Trigger: ACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAG...AACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000471681.5
CDS-3UTR CAA 90 bp AAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTATCAAGGGCTTAGAGTaGAAGGATAAAGTGGTACAT +
Preference number: 5 (lower is better)
Translates to: KSVVVGLVLDTPNCSSCFIKGLE*KDKVVH
Trigger: ATGTACCACTTTATCCTTCAACTCTAAGCCCTTGAT...AAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp TTTCCATTCTCAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 5 (lower is better)
Translates to: FPFSVRERDLFPWFTVIKECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...TTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp AGAACAGCTGAGATTGAGAACCAGGATAACTCTTTAATGAATCAAAGTGCATTGGAATGTGCCCAGTTTTaGTTCTTAAAGGACATTTTG +
Preference number: 5 (lower is better)
Translates to: RTAEIENQDNSLMNQSALECAQF*FLKDIL
Trigger: CAAAATGTCCTTTAAGAACAAAAACTGGGCACATTC...CAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000341455.10
ENST00000471681.5
CDS-3UTR CAA 90 bp AAATCTGTTGTAGTTGGTCTTGTGTTAGACACACCAAACTGCTCTTCATGTTTTTACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: KSVVVGLVLDTPNCSSCFYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...AAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS-3UTR CAA 90 bp CAGTCAGGGAAAGAGATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTATACAAGTATCTTGTGTaGATTTTAGAATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: QSGKEIYFLGLQSSKSVVYKYLV*ILECAQ
Trigger: CTGGGCACATTCTAAAATCAACACAAGATACTTGTA...TACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422788.5
ENST00000434467.5
ENST00000439445.5
CDS TCA 90 bp AAGAGAAATAGAAAGTGGCAAGTAATGGGTACAGTGTTTCTAGAGTaGTCAAAATGTTTTAGAATTGATTGTGGTAATGGTTGCACCACT +
Preference number: 5 (lower is better)
Translates to: KRNRKWQVMGTVFLE*SKCFRIDCGNGCTT
Trigger: AGTGGTGCAACCATTACCACAATCAATTCTAAAACATTTTGATCACTCTAGAAACACTGTACCCATTACTTGCCACTTTCTATTTCTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS TCA 90 bp TGTAGTTTGTGGAATTGTTCTGATCATCTTCACCTATTTATTGAGTaGTATTTCGGGTACTCCAGCAACTTCTTCACCTTAATTAAACCT +
Preference number: 5 (lower is better)
Translates to: CSLWNCSDHLHLFIE*YFGYSSNFFTLIKP
Trigger: AGGTTTAATTAAGGTGAAGAAGTTGCTGGAGTACCCGAAATATCACTCAATAAATAGGTGAAGATGATCAGAACAATTCCACAAACTACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487739.1
CDS-3UTR CAA 90 bp GATCTATTTCCTTGGTTTACAGTCATCAAAATCTGTTGTAGTTGGTCTTGTGTTATACAGTTTGGATATTaGTCCCCTTCAAATCTCATG +
Preference number: 5 (lower is better)
Translates to: DLFPWFTVIKICCSWSCVIQFGY*SPSNLM
Trigger: CATGAGATTTGAAGGGGACAAATATCCAAACTGTAT...AACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000434467.5
CDS TCA 72 bp GTTTCAAGCTTTAAACCATCTCCCAAGTTCATGGCCTaGCCTCGCACTCTCTCCACAGAACGCTCAAGCCCC +
Preference number: 6 (lower is better)
Translates to: VSSFKPSPKFMA*PRTLSTERSSP
Trigger: GGGGCTTGAGCGTTCTGTGGAGAGAGTGCGAGGTCAGGCCATGAACTTGGGAGATGGTTTAAAGCTTGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000394672.8
ENST00000422222.5
ENST00000439445.5
ENST00000459746.5
ENST00000460838.5
ENST00000472582.5
CDS CCA 72 bp GTTGTGAATGCCCCATCAGCTTGGACCACCATAACCTaGCTACGAGACTGTGATAGAATGCTTGAAGAGCCT +
Preference number: 6 (lower is better)
Translates to: VVNAPSAWTTIT*LRDCDRMLEEP
Trigger: AGGCTCTTCAAGCATTCTATCACAGTCTCGTAGCCAGGTTATGGTGGTCCAAGCTGATGGGGCATTCACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000471681.5
ENST00000482673.5
ENST00000494672.1
CDS CCA 72 bp ATGTTATCTACATTCCTGCCTAGGCCCAGTCCAACTTaGGCCTTCAAGCTCCTGCTAAAGTGCCACACTATC +
Preference number: 6 (lower is better)
Translates to: MLSTFLPRPSPT*AFKLLLKCHTI
Trigger: GATAGTGTGGCACTTTAGCAGGAGCTTGAAGGCCCAAGTTGGACTGGGCCTAGGCAGGAATGTAGATAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS GCA 72 bp AAGGGCTGGCAAGGATATAGAGAATCAGAACCCACATaGACTGATGGTGGGAATGTAAAATGGTACCACTGC +
Preference number: 6 (lower is better)
Translates to: KGWQGYRESEPT*TDGGNVKWYHC
Trigger: GCAGTGGTACCATTTTACATTCCCACCATCAGTGCATGTGGGTTCTGATTCTCTATATCCTTGCCAGCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS CCA 72 bp TCAGAACCCACATGCACTGATGGTGGGAATGTAAAATaGTACCACTGCTTTGGAGAAGAGTTTGGTGGTTCC +
Preference number: 6 (lower is better)
Translates to: SEPTCTDGGNVK*YHCFGEEFGGS
Trigger: GGAACCACCAAACTCTTCTCCAAAGCAGTGGTACCATTTTACATTCCCACCATCAGTGCATGTGGGTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS CAA 72 bp GAAACCTTTTCAGCTTTGTGGGCCATATTGTTTCTGTaGCTAGTCTGGTGTGTGAAGTCAGCCACAGACAAT +
Preference number: 6 (lower is better)
Translates to: ETFSALWAILFL*LVWCVKSATDN
Trigger: ATTGTCTGTGGCTGACTTCACACACCAGACTAGCAACAGAAACAATATGGCCCACAAAGCTGAAAAGGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 72 bp AAGCATAAGGAAACCTTTTCAGCTTTGTGGGCCATATaGTTTCTGTTGCTAGTCTGGTGTGTGAAGTCAGCC +
Preference number: 6 (lower is better)
Translates to: KHKETFSALWAI*FLLLVWCVKSA
Trigger: GGCTGACTTCACACACCAGACTAGCAACAGAAACAATATGGCCCACAAAGCTGAAAAGGTTTCCTTATGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS TCA 72 bp ACGAACTTCTATCACATTCCCTTTCCCCCAGAGTACTaGATATATCAGCTGGTTTCCATTCATTCTCTATGG +
Preference number: 6 (lower is better)
Translates to: TNFYHIPFPPEY*IYQLVSIHSLW
Trigger: CCATAGAGAATGAATGGAAACCAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000326595.11
ENST00000394672.8
ENST00000422222.5
ENST00000442522.6
ENST00000471681.5
ENST00000482673.5
CDS TCA 72 bp CCCATGGGATATAGTTTGCTGATCCCTAATGTAAACTaGAACAGATCAGAACAGCCTTACCAAAGCATACGT +
Preference number: 6 (lower is better)
Translates to: PMGYSLLIPNVN*NRSEQPYQSIR
Trigger: ACGTATGCTTTGGTAAGGCTGTTCTGATCTGTTTCAGTTTACATTAGGGATCAGCAAACTATATCCCATGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 90 bp TTCACCTTAATTAAACCTGCAAGTAAAGCCATCAAGGGCTTAGAGTaGAAGGATAAAGTGGTACATCATCCAAACTGGGTTCTATCCACA +
Preference number: 6 (lower is better)
Translates to: FTLIKPASKAIKGLE*KDKVVHHPNWVLST
Trigger: TGTGGATAGAACCCAGTTTGGATGATGTACCACTTTATCCTTCAACTCTAAGCCCTTGATGGCTTTACTTGCAGGTTTAATTAAGGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000434467.5
ENST00000439445.5
ENST00000487739.1
CDS CAA 90 bp TTAGGTCTGAGTTTGGTGGCTTCTCATCTTCTCAAAATATCAAACTaGCGAGTGATGAAGACCATGCACCAGCCCTTTTTATTTATTCAC +
Preference number: 6 (lower is better)
Translates to: LGLSLVASHLLKISN*RVMKTMHQPFLFIH
Trigger: GTGAATAAATAAAAAGGGCTGGTGCATGGTCTTCATCACTCGCAAGTTTGATATTTTGAGAAGATGAGAAGCCACCAAACTCAGACCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000469966.1
CDS CCA 72 bp GAATGTAAAATGGTACCACTGCTTTGGAGAAGAGTTTaGTGGTTCCTCAAAATGCTAAACATACAGTACCTG +
Preference number: 6 (lower is better)
Translates to: ECKMVPLLWRRV*WFLKMLNIQYL
Trigger: CAGGTACTGTATGTTTAGCATTTTGAGGAACCACCAAACTCTTCTCCAAAGCAGTGGTACCATTTTACATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS CCA 72 bp GTTTTGAATCCAGAAACGTCAACACATCATCTAAGATaGAAGAGCTTTACCTTTTTGACTAGATGCCACCTC +
Preference number: 6 (lower is better)
Translates to: VLNPETSTHHLR*KSFTFLTRCHL
Trigger: GAGGTGGCATCTAGTCAAAAAGGTAAAGCTCTTCCATCTTAGATGATGTGTTGACGTTTCTGGATTCAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 72 bp ATTAAACCTGCAAGTAAAGCCATCAAGGGCTTAGAGTaGAAGGATAAAGTGGTACATCATCCAAACTGGGTT +
Preference number: 6 (lower is better)
Translates to: IKPASKAIKGLE*KDKVVHHPNWV
Trigger: AACCCAGTTTGGATGATGTACCACTTTATCCTTCAACTCTAAGCCCTTGATGGCTTTACTTGCAGGTTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000434467.5
ENST00000439445.5
ENST00000487739.1
CDS CAA 72 bp TCAACACATCATCTAAGATGGAAGAGCTTTACCTTTTaGACTAGATGCCACCTCAACTTTGACTCCGTTTCT +
Preference number: 6 (lower is better)
Translates to: STHHLRWKSFTF*TRCHLNFDSVS
Trigger: AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGTAAAGCTCTTCCATCTTAGATGATGTGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 90 bp AGATCAGAACAGCCTTACCAAAGCATACGTATGAGAAACTGTGTTTaGAATCCAGAAACGTCAACACATCATCTAAGATGGAAGAGCTTT +
Preference number: 6 (lower is better)
Translates to: RSEQPYQSIRMRNCV*NPETSTHHLRWKSF
Trigger: AAAGCTCTTCCATCTTAGATGATGTGTTGACGTTTCTGGATTCAAAACACAGTTTCTCATACGTATGCTTTGGTAAGGCTGTTCTGATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 90 bp TTCTATTTGCTTATTCAACTCTTCAATCCATTTTCTTTGCAGTTCTaGTTTCACAGCACTGAAAGGGTGCTCCAGCAGTACTGTTTCCTA +
Preference number: 6 (lower is better)
Translates to: FYLLIQLFNPFSLQF*FHSTERVLQQYCFL
Trigger: TAGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000484623.5
CDS CCA 72 bp TGTAAAATGGTACCACTGCTTTGGAGAAGAGTTTGGTaGTTCCTCAAAATGCTAAACATACAGTACCTGTTA +
Preference number: 6 (lower is better)
Translates to: CKMVPLLWRRVW*FLKMLNIQYLL
Trigger: TAACAGGTACTGTATGTTTAGCATTTTGAGGAACCACCAAACTCTTCTCCAAAGCAGTGGTACCATTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480884.5
CDS TCA 72 bp AACAAAAGTATTCAATGTAGGCAAGTCAGCTCTACATaGAGCAGAACAGACAGCCATGCACAAAATTTAACT +
Preference number: 6 (lower is better)
Translates to: NKSIQCRQVSST*SRTDSHAQNLT
Trigger: AGTTAAATTTTGTGCATGGCTGTCTGTTCTGCTTCATGTAGAGCTGACTTGCCTACATTGAATACTTTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000482673.5
CDS GCA 72 bp GAGCCCCATTCTGAGACAACTAAACCAGCTGGTTCATaGACAAAGAATAAAAATTCTAATGGTTCTAAATCT +
Preference number: 6 (lower is better)
Translates to: EPHSETTKPAGS*TKNKNSNGSKS
Trigger: AGATTTAGAACCATTAGAATTTTTATTCTTTGTGCATGAACCAGCTGGTTTAGTTGTCTCAGAATGGGGCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000476142.1
CDS CAA 72 bp TTAGAATGTGCCCAGTTTTTGTTCTTAAAGGACATTTaGCAATCTTGGCCTTATTTCCCATCATATGGAGAC +
Preference number: 6 (lower is better)
Translates to: LECAQFLFLKDI*QSWPYFPSYGD
Trigger: GTCTCCATATGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAACTGGGCACATTCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000460838.5
ENST00000469966.1
CDS CAA 72 bp TTAGAATGTGCCCAGTTTTTGTTCTTAAAGGACATTTaGCAATCTTGGCCTTATTTCCCATCTTCACAGAAA +
Preference number: 6 (lower is better)
Translates to: LECAQFLFLKDI*QSWPYFPSSQK
Trigger: TTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAACTGGGCACATTCTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000326595.11
ENST00000341455.10
ENST00000394672.8
ENST00000422222.5
ENST00000442522.6
ENST00000471681.5
ENST00000472582.5
CDS TCA 72 bp AGAAAGTGGCAAGTAATGGGTACAGTGTTTCTAGAGTaGTCAAAATGTTTTAGAATTGATTGTGGTAATGGT +
Preference number: 6 (lower is better)
Translates to: RKWQVMGTVFLE*SKCFRIDCGNG
Trigger: ACCATTACCACAATCAATTCTAAAACATTTTGATCACTCTAGAAACACTGTACCCATTACTTGCCACTTTCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480884.5