Pregenerated sensors for CCDC34 (Homo sapiens)
Ensembl gene IDs: ENSG00000109881Ensembl transcript IDs: ENST00000317945.6, ENST00000328697.11, ENST00000529615.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGATCCAAAAGGTCAGGCCTAGAAATACAGACTTGGTGACTGCCTaGAGGCAAATATTAGTGCAAGCCACAGGAGGGAAAAAGGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: RIQKVRPRNTDLVTA*RQILVQATGGKKEK Trigger: TTTCTCCTTTTTCCCTCCTGTGGCTTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGGCCTGACCTTTTGGATCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CCA 90 bp | AAATGCAGCCATTCAATGAACATCTTCACTCAATTAAACTATTTTTaGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACT | + |
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Preference number: 1 (lower is better) Translates to: KCSHSMNIFTQLNYF*TYIMRRYSSSSWKT Trigger: AGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCAAAAATAGTTTAATTGAGTGAAGATGTTCATTGAATGGCTGCATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CCA 90 bp | CCAGAAGTATCTTACATTCCTAGACAAACAACAACTAGGTTTGATTaGCATGGTAAAATTAGCTTAATGGAGTTAGAAGATAAGAAGGAC | + |
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Preference number: 1 (lower is better) Translates to: PEVSYIPRQTTTRFD*HGKISLMELEDKKD Trigger: GTCCTTCTTATCTTCTAACTCCATTAAGCTAATTTTACCATGCCAATCAAACCTAGTTGTTGTTTGTCTAGGAATGTAAGATACTTCTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CAA 90 bp | GCACTTGCCATAAGGATCCAAAAGGTCAGGCCTAGAAATACAGACTaGGTGACTGCCTGCAGGCAAATATTAGTGCAAGCCACAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: ALAIRIQKVRPRNTD*VTACRQILVQATGG Trigger: CCCTCCTGTGGCTTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGGCCTGACCTTTTGGATCCTTATGGCAAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR TCA 90 bp | GAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGGCACTTGCCATAGAAATACAGACTTGGTaGCTGCCTGCAGGCAAATAT | + |
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Preference number: 2 (lower is better) Translates to: EMGKMGCFRFADLEALAIEIQTW*LPAGKY Trigger: ATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTC...TATGGCAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR GCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGGACTTGGTGACTGCCTaGAGGCAAATATTAGTGCAA | + |
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Preference number: 2 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKDLVTA*RQILVQ Trigger: TTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTC...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR GCA 90 bp | AATTCTCAACATTACGGAATTTTGCCTTCAATAACTAGTGATTTATGTCAGGGCAGACTTGGAGGCACTTaGCATAAGGATCCAAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: NSQHYGILPSITSDLCQGRLGGT*HKDPKG Trigger: ACCTTTTGGATCCTTATGGCAAGTGCCTCCAAGTCT...GCCCTGACATAAATCACTAGTTATTGAAGGCAAAATTCCGTAATGTTGAGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGGAGAAATGGGCAAAATaGGTTGTTTTAGATTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKEKWAK*VVLDLQ Trigger: CTGCAAATCTAAAACAACCCATTTTGCCCATTTCTC...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CCA 90 bp | AATTCTCAACATTACGGAATTTTGCCTTCAATAACTAGTGATTTATGTCAGGGCAGAGAAATGGGAGGATaGATTTACGAAGGAGAAATG | + |
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Preference number: 2 (lower is better) Translates to: NSQHYGILPSITSDLCQGREMGG*IYEGEM Trigger: CATTTCTCCTTCGTAAATCCATCCTCCCATTTCTCT...GCCCTGACATAAATCACTAGTTATTGAAGGCAAAATTCCGTAATGTTGAGAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATTTTACGAAGGAGAAATaGGCAAAATGGGTTGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: SITSDLCQGKPLPSKRNNFTKEK*AKWVVL Trigger: TAAAACAACCCATTTTGCCCATTTCTCCTTCGTAAA...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR GCA 72 bp | AAGGTCAGGCCTAGAAATACAGACTTGGTGACTGCCTaGAGGCAAATATTAGTGCAAGCCACAGGAGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: KVRPRNTDLVTA*RQILVQATGGK Trigger: TTTCCCTCCTGTGGCTTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGGCCTGACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CAA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGCCTAGAAATACAGACTaGGTGACTGCCTGCAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKPRNTD*VTACRQ Trigger: TTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGG...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CCA 72 bp | TGGGAGGATGGATTTACGAAGGAGAAATGGGCAAAATaGGTTGTTTTAGATTTGCAGACTTGGAGGCACTTG | + |
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Preference number: 3 (lower is better) Translates to: WEDGFTKEKWAK*VVLDLQTWRHL Trigger: CAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTCTCCTTCGTAAATCCATCCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CAA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCGCAGAAGATAGAGACTaGATAAATGTCCACCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: HISCAGIHLAPGKLNKRGAEDRD*INVHQD Trigger: ATCCTGGTGGACATTTATCAAGTCTCTATCTTCTGC...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR-3UTR CAA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGTGGGTTGTTTTAGATTaGCAGACTTGGAGGCACTTG | + |
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Preference number: 3 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKWVVLD*QTWRHL Trigger: CAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCA...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CCA 72 bp | CATTCAATGAACATCTTCACTCAATTAAACTATTTTTaGACATATATCATGCGCAGGTATTCATCTAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: HSMNIFTQLNYF*TYIMRRYSSSS Trigger: GGAGCTAGATGAATACCTGCGCATGATATATGTCCAAAAATAGTTTAATTGAGTGAAGATGTTCATTGAATG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR GCA 90 bp | AATTCTCAACATTACGGAATTTTGCCTTCAATAACTAGTGATTTATGTCAGGGCACCACCTCCAGCCCCTaGCCACGTGCGCCCGTCATA | + |
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Preference number: 4 (lower is better) Translates to: NSQHYGILPSITSDLCQGTTSSP*PRAPVI Trigger: TATGACGGGCGCACGTGGGCAGGGGCTGGAGGTGGT...GCCCTGACATAAATCACTAGTTATTGAAGGCAAAATTCCGTAATGTTGAGAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | GAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGGCACTTGCCATAAAACCACACCTCCCATaGTGTCAGGCGGCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: EMGKMGCFRFADLEALAIKPHLP*CQAAFW Trigger: CCAGAAAGCCGCCTGACACCATGGGAGGTGTGGTTT...TATGGCAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATCCCGCCGCCCACATCTaGCCCGCCAAGTTCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: SITSDLCQGKPLPSKRNNPAAHI*PAKFKL Trigger: CAGTTTGAACTTGGCGGGCCAGATGTGGGCGGCGGG...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGACAACAGCGACCTGGTaGAATTGCTGCAGCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKTTATW*NCCSSA Trigger: CGCTGAGCTGCAGCAATTCCACCAGGTCGCTGTTGT...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAACTGGAAGCTCTGGTaGCCAAGGGGAGACAACAGC | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKNWKLW*PRGDNS Trigger: GCTGTTGTCTCCCCTTGGCCACCAGAGCTTCCAGTT...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCATTCAACCTGAGTGCTaGCGCACCCCTGTAACTCCA | + |
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Preference number: 4 (lower is better) Translates to: HISCAGIHLAPGKLNKRGIQPEC*RTPVTP Trigger: TGGAGTTACAGGGGTGCGCCAGCACTCAGGTTGAAT...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR TCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGTTTTCTGATTCAACCTaGGTGCTGGCGCACCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKFSDST*VLAHPC Trigger: ACAGGGGTGCGCCAGCACTCAGGTTGAATCAGAAAA...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGGAGACAACAGCGACCTaGTGGAATTGCTGCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKETTAT*WNCCSS Trigger: TGAGCTGCAGCAATTCCACCAGGTCGCTGTTGTCTC...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGTCAAACTGGAAGCTCTaGTGGCCAAGGGGAGACAAC | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKSNWKL*WPRGDN Trigger: GTTGTCTCCCCTTGGCCACCAGAGCTTCCAGTTTGA...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | ATTTACGAAGGAGAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGTCGTCCTCGTCAAACTaGAAGCTCTGGTGGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: IYEGEMGKMGCFRFADLESSSSN*KLWWPR Trigger: CCTTGGCCACCAGAGCTTCCAGTTTGACGAGGACGA...CTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTCTCCTTCGTAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| 3UTR CAA 72 bp | ATAAGGATCCAAAAGGTCAGGCCTAGAAATACAGACTaGGTGACTGCCTGCAGGCAAATATTAGTGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: IRIQKVRPRNTD*VTACRQILVQA Trigger: GGCTTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGGCCTGACCTTTTGGATCCTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR GCA 90 bp | GAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGGCACTTGCCATATCTAGAGCTTTCAGTTaGAGCCGGTCACGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: EMGKMGCFRFADLEALAISRAFS*SRSRSS Trigger: AGAAGAACGTGACCGGCTGCAACTGAAAGCTCTAGA...TATGGCAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR GCA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCGACTTGGTGACTGCCTaGAGGCAAATATTAGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: HISCAGIHLAPGKLNKRGDLVTA*RQILVQ Trigger: TTGCACTAATATTTGCCTGCAGGCAGTCACCAAGTC...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR GCA 90 bp | TGGACATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGACTTGGAGGCACTTaGCATAAGGATCCAAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: WTYIMRRYSSSSWKTEQKRLGGT*HKDPKG Trigger: ACCTTTTGGATCCTTATGGCAAGTGCCTCCAAGTCT...CTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR TCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATGAAATACAGACTTGGTaGCTGCCTGCAGGCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: SITSDLCQGKPLPSKRNNEIQTW*LPAGKY Trigger: ATATTTGCCTGCAGGCAGTCACCAAGTCTGTATTTC...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCTATTCATCTAGCTCCTaGAAAACTGAACAAAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: HISCAGIHLAPGKLNKRGYSSSS*KTEQKR Trigger: CCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATA...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR TCA 90 bp | AATTCTCAACATTACGGAATTTTGCCTTCAATAACTAGTGATTTATGTCAGGGCTTCTTGGTTATTTTCTaGTTCAACCTGAGTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: NSQHYGILPSITSDLCQGFLVIF*FNLSAG Trigger: GCCAGCACTCAGGTTGAATCAGAAAATAACCAAGAA...GCCCTGACATAAATCACTAGTTATTGAAGGCAAAATTCCGTAATGTTGAGAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR TCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATTGCTCATTCTTTTTCTaGACCCATTCCTTGTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: SITSDLCQGKPLPSKRNNCSFFF*THSLCF Trigger: AAAGCACAAGGAATGGGTTCAGAAAAAGAATGAGCA...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATAGAGAAATGGGAGGATaGATTTACGAAGGAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: SITSDLCQGKPLPSKRNNREMGG*IYEGEM Trigger: CATTTCTCCTTCGTAAATCCATCCTCCCATTTCTCT...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR GCA 90 bp | AATTCTCAACATTACGGAATTTTGCCTTCAATAACTAGTGATTTATGTCAGGGCAGAGGCAAAAATCCCTaGCCTTATGTAGCTTACAAT | + |
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Preference number: 4 (lower is better) Translates to: NSQHYGILPSITSDLCQGRGKNP*PYVAYN Trigger: ATTGTAAGCTACATAAGGGCAGGGATTTTTGCCTCT...GCCCTGACATAAATCACTAGTTATTGAAGGCAAAATTCCGTAATGTTGAGAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CCA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATGAGAAATGGGCAAAATaGGTTGTTTTAGATTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SITSDLCQGKPLPSKRNNEKWAK*VVLDLQ Trigger: CTGCAAATCTAAAACAACCCATTTTGCCCATTTCTC...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS CCA 90 bp | TGCTGGCGCACCCCTGTAACTCCATTCCTCTCAGGCTCGCCACTTTaGCCTCTGAATCATGGGCATCTTCATCCACGTCTTCCTCATCAT | + |
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Preference number: 5 (lower is better) Translates to: CWRTPVTPFLSGSPL*PLNHGHLHPRLPHH Trigger: ATGATGAGGAAGACGTGGATGAAGATGCCCATGATTCAGAGGCCAAAGTGGCGAGCCTGAGAGGAATGGAGTTACAGGGGTGCGCCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000317945.6 ENST00000328697.11 |
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| CDS-3UTR CAA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCCTCAGGCTCGCCACTTaGGCCTCTGAATCATGGGCA | + |
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Preference number: 5 (lower is better) Translates to: HISCAGIHLAPGKLNKRGLRLAT*ASESWA Trigger: TGCCCATGATTCAGAGGCCAAAGTGGCGAGCCTGAG...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS TCA 90 bp | GGCAACAGAGCCAGAGGGAGACCCAGAGATGATGACTTGTGTGGCTaGCTTATCACAGGTCTTTTACTCTTCCTTCCTGATAGATCCTTA | + |
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Preference number: 5 (lower is better) Translates to: GNRARGRPRDDDLCG*LITGLLLFLPDRSL Trigger: TAAGGATCTATCAGGAAGGAAGAGTAAAAGACCTGTGATAAGTCAGCCACACAAGTCATCATCTCTGGGTCTCCCTCTGGCTCTGTTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529615.1 |
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| CDS-3UTR CAA 90 bp | TCAATAACTAGTGATTTATGTCAGGGCAAGCCACTTCCCTCCAAAAGAAATAATAGCGACCTGGTGGAATaGCTGCAGCTCAGCGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SITSDLCQGKPLPSKRNNSDLVE*LQLSGS Trigger: GCTGCCGCTGAGCTGCAGCAATTCCACCAGGTCGCT...ATTATTTCTTTTGGAGGGAAGTGGCTTGCCCTGACATAAATCACTAGTTATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CAA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCCCTAGAAATACAGACTaGGTGACTGCCTGCAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: HISCAGIHLAPGKLNKRGPRNTD*VTACRQ Trigger: TTGCCTGCAGGCAGTCACCAAGTCTGTATTTCTAGG...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CAA 90 bp | CATATATCATGCGCAGGTATTCATCTAGCTCCTGGAAAACTGAACAAAAGAGGCTTTAGATTTGCAGACTaGGAGGCACTTGCCATAAGG | + |
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Preference number: 5 (lower is better) Translates to: HISCAGIHLAPGKLNKRGFRFAD*EALAIR Trigger: CCTTATGGCAAGTGCCTCCAAGTCTGCAAATCTAAA...GCCTCTTTTGTTCAGTTTTCCAGGAGCTAGATGAATACCTGCGCATGATATATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CAA 90 bp | GAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGGCACTTGCCATATGGGTTGTTTTAGATTaGCAGACTTGGAGGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: EMGKMGCFRFADLEALAIWVVLD*QTWRHL Trigger: CAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCA...TATGGCAAGTGCCTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS-3UTR CAA 90 bp | ATTTACGAAGGAGAAATGGGCAAAATGGGTTGTTTTAGATTTGCAGACTTGGAGGCAGAAGATAGAGACTaGATAAATGTCCACCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: IYEGEMGKMGCFRFADLEAEDRD*INVHQD Trigger: ATCCTGGTGGACATTTATCAAGTCTCTATCTTCTGC...CTCCAAGTCTGCAAATCTAAAACAACCCATTTTGCCCATTTCTCCTTCGTAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000317945.6 |
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| CDS CCA 72 bp | AGCTCTGGTGGCCAAGGGGAGACAACAGCGACCTGGTaGAATTGCTGCAGCTCAGCGGCAGCGGCGGCGACG | + |
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Preference number: 6 (lower is better) Translates to: SSGGQGETTATW*NCCSSAAAAAT Trigger: CGTCGCCGCCGCTGCCGCTGAGCTGCAGCAATTCCACCAGGTCGCTGTTGTCTCCCCTTGGCCACCAGAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000317945.6 ENST00000328697.11 |
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| CDS CAA 90 bp | GTGCTGGCGCACCCCTGTAACTCCATTCCTCTCAGGCTCGCCACTTaGGCCTCTGAATCATGGGCATCTTCATCCACGTCTTCCTCATCA | + |
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Preference number: 6 (lower is better) Translates to: VLAHPCNSIPLRLAT*ASESWASSSTSSSS Trigger: TGATGAGGAAGACGTGGATGAAGATGCCCATGATTCAGAGGCCAAAGTGGCGAGCCTGAGAGGAATGGAGTTACAGGGGTGCGCCAGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000317945.6 ENST00000328697.11 |
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| CDS CAA 72 bp | CACCCCTGTAACTCCATTCCTCTCAGGCTCGCCACTTaGGCCTCTGAATCATGGGCATCTTCATCCACGTCT | + |
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Preference number: 6 (lower is better) Translates to: HPCNSIPLRLAT*ASESWASSSTS Trigger: AGACGTGGATGAAGATGCCCATGATTCAGAGGCCAAAGTGGCGAGCCTGAGAGGAATGGAGTTACAGGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000317945.6 ENST00000328697.11 |
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| CDS TCA 72 bp | GCCAGAGGGAGACCCAGAGATGATGACTTGTGTGGCTaGCTTATCACAGGTCTTTTACTCTTCCTTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: ARGRPRDDDLCG*LITGLLLFLPD Trigger: ATCAGGAAGGAAGAGTAAAAGACCTGTGATAAGTCAGCCACACAAGTCATCATCTCTGGGTCTCCCTCTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529615.1 |
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