Pregenerated sensors for CCDC181 (Homo sapiens)
Ensembl gene IDs: ENSG00000117477Ensembl transcript IDs: ENST00000367805.7, ENST00000367806.7, ENST00000437857.2, ENST00000445428.5, ENST00000545005.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGAGAAGGGGTAGGTACGGCGGGCTTGCAGCAGGCAAGGCAACCTaGTTCCAGTCTTCAGCCGCACACCCAGAAGGAGGGAGTCGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RRRGRYGGLAAGKAT*FQSSAAHPEGGSRW Trigger: CCAGCGACTCCCTCCTTCTGGGTGTGCGGCTGAAGACTGGAAGCAGGTTGCCTTGCCTGCTGCAAGCCCGCCGTACCTACCCCTTCTCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000545005.5 |
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| CDS CAA 90 bp | GGCACAGGGAGGGGCGCACGCGGAGAAGGGGTAGGTACGGCGGGCTaGCAGCAGGCAAGGCAACCTGCTTCCAGTCTTCAGCCGCACACC | + |
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Preference number: 6 (lower is better) Translates to: GTGRGARGEGVGTAG*QQARQPASSLQPHT Trigger: GGTGTGCGGCTGAAGACTGGAAGCAGGTTGCCTTGCCTGCTGCAAGCCCGCCGTACCTACCCCTTCTCCGCGTGCGCCCCTCCCTGTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000545005.5 |
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| CDS CAA 72 bp | AGGGGCGCACGCGGAGAAGGGGTAGGTACGGCGGGCTaGCAGCAGGCAAGGCAACCTGCTTCCAGTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: RGARGEGVGTAG*QQARQPASSLQ Trigger: CTGAAGACTGGAAGCAGGTTGCCTTGCCTGCTGCAAGCCCGCCGTACCTACCCCTTCTCCGCGTGCGCCCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000545005.5 |
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| CDS GCA 72 bp | GGTAGGTACGGCGGGCTTGCAGCAGGCAAGGCAACCTaGTTCCAGTCTTCAGCCGCACACCCAGAAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: GRYGGLAAGKAT*FQSSAAHPEGG Trigger: CCCTCCTTCTGGGTGTGCGGCTGAAGACTGGAAGCAGGTTGCCTTGCCTGCTGCAAGCCCGCCGTACCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000545005.5 |
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| CDS CCA 72 bp | CAGTCTTCAGCCGCACACCCAGAAGGAGGGAGTCGCTaGCCGGGAGATCGGGCTCCAGGTTTTCTGTCTCAC | + |
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Preference number: 6 (lower is better) Translates to: QSSAAHPEGGSR*PGDRAPGFLSH Trigger: GTGAGACAGAAAACCTGGAGCCCGATCTCCCGGCCAGCGACTCCCTCCTTCTGGGTGTGCGGCTGAAGACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000545005.5 |
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| CDS CAA 90 bp | AACAGGCTATCCAGAGTTCGACTCCTCCTCCTGCACTGGCTAGTCTaGAGAGCCTCTTCCCGGGAAAAACTCGGGTGGAAAGACCATCCG | + |
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Preference number: 6 (lower is better) Translates to: NRLSRVRLLLLHWLV*RASSREKLGWKDHP Trigger: CGGATGGTCTTTCCACCCGAGTTTTTCCCGGGAAGAGGCTCTCAAGACTAGCCAGTGCAGGAGGAGGAGTCGAACTCTGGATAGCCTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445428.5 ENST00000545005.5 |
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| CDS CAA 72 bp | TCCAGAGTTCGACTCCTCCTCCTGCACTGGCTAGTCTaGAGAGCCTCTTCCCGGGAAAAACTCGGGTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SRVRLLLLHWLV*RASSREKLGWK Trigger: TTTCCACCCGAGTTTTTCCCGGGAAGAGGCTCTCAAGACTAGCCAGTGCAGGAGGAGGAGTCGAACTCTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445428.5 ENST00000545005.5 |
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| CDS CCA 72 bp | AACAGGCTATCCAGAGTTCGACTCCTCCTCCTGCACTaGCTAGTCTTGAGAGCCTCTTCCCGGGAAAAACTC | + |
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Preference number: 6 (lower is better) Translates to: NRLSRVRLLLLH*LVLRASSREKL Trigger: GAGTTTTTCCCGGGAAGAGGCTCTCAAGACTAGCCAGTGCAGGAGGAGGAGTCGAACTCTGGATAGCCTGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000437857.2 ENST00000445428.5 ENST00000545005.5 |
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| CDS CAA 90 bp | ATCCTGATGTGTGAATTTCCTTCATCTTGTGGTTTGGCGTGGGTTTaGGAGGAGGAGTTTCAGAAAACGGTCAACATCGGCACAGTTAGG | + |
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Preference number: 6 (lower is better) Translates to: ILMCEFPSSCGLAWV*EEEFQKTVNIGTVR Trigger: CCTAACTGTGCCGATGTTGACCGTTTTCTGAAACTCCTCCTCCAAAACCCACGCCAAACCACAAGATGAAGGAAATTCACACATCAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000437857.2 ENST00000445428.5 ENST00000545005.5 |
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| CDS CAA 72 bp | TGTGAATTTCCTTCATCTTGTGGTTTGGCGTGGGTTTaGGAGGAGGAGTTTCAGAAAACGGTCAACATCGGC | + |
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Preference number: 6 (lower is better) Translates to: CEFPSSCGLAWV*EEEFQKTVNIG Trigger: GCCGATGTTGACCGTTTTCTGAAACTCCTCCTCCAAAACCCACGCCAAACCACAAGATGAAGGAAATTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000437857.2 ENST00000445428.5 ENST00000545005.5 |
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| CDS CAA 72 bp | GGCATCCTGATGTGTGAATTTCCTTCATCTTGTGGTTaGGCGTGGGTTTTGGAGGAGGAGTTTCAGAAAACG | + |
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Preference number: 6 (lower is better) Translates to: GILMCEFPSSCG*AWVLEEEFQKT Trigger: CGTTTTCTGAAACTCCTCCTCCAAAACCCACGCCAAACCACAAGATGAAGGAAATTCACACATCAGGATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000437857.2 ENST00000445428.5 ENST00000545005.5 |
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| CDS CCA 72 bp | TTCCAACTTCTGTCCATCAAACATTCCCTCTTTGGTTaGCTGCAGACACTTCTGGATTCTGAAATGAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: FQLLSIKHSLFG*LQTLLDSEMKG Trigger: TCCCTTCATTTCAGAATCCAGAAGTGTCTGCAGCCAACCAAAGAGGGAATGTTTGATGGACAGAAGTTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445428.5 |
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| CDS GCA 72 bp | AAACGAAAAGGTTTGGCTTCTGACATATATAGGTGGTaGTGTAACTGTTTAGAACGCTTAGCTTCTAGTCGG | + |
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Preference number: 6 (lower is better) Translates to: KRKGLASDIYRW*CNCLERLASSR Trigger: CCGACTAGAAGCTAAGCGTTCTAAACAGTTACAGCACCACCTATATATGTCAGAAGCCAAACCTTTTCGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000367805.7 ENST00000367806.7 ENST00000545005.5 |
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| CDS CCA 72 bp | GTAAAACGAAAAGGTTTGGCTTCTGACATATATAGGTaGTGCTGTAACTGTTTAGAACGCTTAGCTTCTAGT | + |
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Preference number: 6 (lower is better) Translates to: VKRKGLASDIYR*CCNCLERLASS Trigger: ACTAGAAGCTAAGCGTTCTAAACAGTTACAGCACCACCTATATATGTCAGAAGCCAAACCTTTTCGTTTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000367805.7 ENST00000367806.7 ENST00000545005.5 |
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| CDS CAA 72 bp | AGATTTTTACAGCCTTATTTCATGTGTTCAGCACCTTaGAGCATATGTCCATTTGCCATAAGGCAAAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: RFLQPYFMCSAP*SICPFAIRQKF Trigger: AAACTTTTGCCTTATGGCAAATGGACATATGCTCAAAGGTGCTGAACACATGAAATAAGGCTGTAAAAATCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445428.5 |
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