Pregenerated sensors for CCDC179 (Homo sapiens)
Ensembl gene IDs: ENSG00000255359Ensembl transcript IDs: ENST00000529466.1, ENST00000532798.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CACTTGATGTTCACAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATTACAGGCACATGCCGTaGAGCCTTAGGGCGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: HLMFTIHIFLSGAWFPSNYRHMP*SLRAPP Trigger: AGGGGGCGCCCTAAGGCTCCACGGCATGTGCCTGTA...ATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR GCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTAGCAATACAGGCACATaGCGTGGAGCCTTAGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFSNTGT*RGALGR Trigger: GCGCCCTAAGGCTCCACGGCATGTGCCTGTATTGCT...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR TCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTTTGGTCCTTCAGGGTTaGCTTGGGAAGGCTCGATGT | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFLVLQG*LGKARC Trigger: ACATCGAGCCTTCCCAAGTCAACCCTGAAGGACCAA...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR TCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTCCGCTCAGTGACCTCTaGAGGATGATGTTGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFPLSDL*RMMLSW Trigger: CCAAGACAACATCATCCTTCAGAGGTCACTGAGCGG...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CCA 90 bp | GTAGCTTGGATATTAAATACTTGCACTGTGTTTATTTTTCCGAAATGGTGGAGTCCTTCAGGGTTGACTTaGGAAGGCTCGATGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: VAWILNTCTVFIFPKWWSPSGLT*EGSMSQ Trigger: CTGGGACATCGAGCCTTCCCAAGTCAACCCTGAAGG...ACTCCACCATTTCGGAAAAATAAACACAGTGCAAGTATTTAATATCCAAGCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR TCA 90 bp | CACTTGATGTTCACAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATGTGACCTCTGAAGGATaGTGTTGTCTTGGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: HLMFTIHIFLSGAWFPSNVTSEG*CCLGPS Trigger: TGAAGGACCAAGACAACATCATCCTTCAGAGGTCAC...ATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTAGGATGATGTTGTCTTaGTCCTTCAGGGTTGACTTG | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFRMMLS*SFRVDL Trigger: CAAGTCAACCCTGAAGGACCAAGACAACATCATCCT...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR GCA 90 bp | CACTTGATGTTCACAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATCTGAATACGTTTATTTaGAAGCTGCCGCTCAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: HLMFTIHIFLSGAWFPSNLNTFI*KLPLSD Trigger: GTCACTGAGCGGCAGCTTGCAAATAAACGTATTCAG...ATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR TCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTAGGTGTTGCATATTCTaGATACGTTTATTTGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFRCCIF*IRLFAS Trigger: GCTTGCAAATAAACGTATTCAGAATATGCAACACCT...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR GCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTCTTCAAATAGACTCCTaGTTTATCAAGATGACCATA | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFLQIDS*FIKMTI Trigger: TATGGTCATCTTGATAAAGCAGGAGTCTATTTGAAG...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR GCA 90 bp | CAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATAGACTCCTGCTTTACACTATGGCTTATCTaGAATAGCAACACAAAATAC | + |
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Preference number: 4 (lower is better) Translates to: QSTYFCLEHGFLQIDSCFTLWLI*NSNTKY Trigger: GTATTTTGTGTTGCTATTGCAGATAAGCCATAGTGT...AAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CCA 90 bp | CACTTGATGTTCACAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATCTAGAGCCTGTAGCTTaGATATTAAATACTTGCACT | + |
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Preference number: 4 (lower is better) Translates to: HLMFTIHIFLSGAWFPSNLEPVA*ILNTCT Trigger: AGTGCAAGTATTTAATATCCAAGCTACAGGCTCTAG...ATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CCA 90 bp | GTAGCTTGGATATTAAATACTTGCACTGTGTTTATTTTTCCGAAATGGTGGAGTTTTCTGTCTGGAGCATaGTTTCCTTCAAATAGACTC | + |
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Preference number: 4 (lower is better) Translates to: VAWILNTCTVFIFPKWWSFLSGA*FPSNRL Trigger: GAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAA...ACTCCACCATTTCGGAAAAATAAACACAGTGCAAGTATTTAATATCCAAGCTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CAA 90 bp | CACTTGATGTTCACAATCCACATATTTCTGTCTGGAGCATGGTTTCCTTCAAATCTTGGTCCTTCAGGGTaGACTTGGGAAGGCTCGATG | + |
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Preference number: 5 (lower is better) Translates to: HLMFTIHIFLSGAWFPSNLGPSG*TWEGSM Trigger: CATCGAGCCTTCCCAAGTCAACCCTGAAGGACCAAG...ATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS-3UTR CAA 90 bp | GTAGCTTGGATATTAAATACTTGCACTGTGTTTATTTTTCCGAAATGGTGGAGTTCCTTCAGGGTTGACTaGGGAAGGCTCGATGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: VAWILNTCTVFIFPKWWSSFRVD*GRLDVP Trigger: TGGGACATCGAGCCTTCCCAAGTCAACCCTGAAGGA...ACTCCACCATTTCGGAAAAATAAACACAGTGCAAGTATTTAATATCCAAGCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS CCA 72 bp | GAAGGCTCGATGTCCCAGCAATACAGGCACATGCCGTaGAGCCTTAGGGCGCCCCCTGACGCCTACTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: EGSMSQQYRHMP*SLRAPPDAYCL Trigger: CAGGCAGTAGGCGTCAGGGGGCGCCCTAAGGCTCCACGGCATGTGCCTGTATTGCTGGGACATCGAGCCTTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS GCA 72 bp | CTTGGGAAGGCTCGATGTCCCAGCAATACAGGCACATaGCGTGGAGCCTTAGGGCGCCCCCTGACGCCTACT | + |
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Preference number: 6 (lower is better) Translates to: LGKARCPSNTGT*RGALGRPLTPT Trigger: AGTAGGCGTCAGGGGGCGCCCTAAGGCTCCACGGCATGTGCCTGTATTGCTGGGACATCGAGCCTTCCCAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS TCA 72 bp | TTATTTGCAAGCTGCCGCTCAGTGACCTCTGAAGGATaGTGTTGTCTTGGTCCTTCAGGGTTGACTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: LFASCRSVTSEG*CCLGPSGLTWE Trigger: TTCCCAAGTCAACCCTGAAGGACCAAGACAACATCATCCTTCAGAGGTCACTGAGCGGCAGCTTGCAAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS TCA 72 bp | AATACGTTTATTTGCAAGCTGCCGCTCAGTGACCTCTaGAGGATGATGTTGTCTTGGTCCTTCAGGGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: NTFICKLPLSDL*RMMLSWSFRVD Trigger: GTCAACCCTGAAGGACCAAGACAACATCATCCTTCAGAGGTCACTGAGCGGCAGCTTGCAAATAAACGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532798.3 |
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| CDS CCA 72 bp | TTGATGTTCACAATCCACATATTTCTGTCTGGAGCATaGTTTCCTTCAAATAGACTCCTGCTTTATCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: LMFTIHIFLSGA*FPSNRLLLYQD Trigger: ATCTTGATAAAGCAGGAGTCTATTTGAAGGAAACCATGCTCCAGACAGAAATATGTGGATTGTGAACATCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000529466.1 ENST00000532798.3 |
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