Pregenerated sensors for CCDC175 (Homo sapiens)
Ensembl gene IDs: ENSG00000151838Ensembl transcript IDs: ENST00000281581.5, ENST00000537690.7, ENST00000556936.5, ENST00000556996.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAGCGCCTCGACCGCGACCGAGGAGCCCAGGGTGGAGGGTAAGGTaGATAACTCCAGGGAGGGGCCAGTGGAGACGGCAGCCGCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: PAPRPRPRSPGWRVR*ITPGRGQWRRQPPA Trigger: TGCAGGCGGCTGCCGTCTCCACTGGCCCCTCCCTGGAGTTATGCACCTTACCCTCCACCCTGGGCTCCTCGGTCGCGGTCGAGGCGCTGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS TCA 90 bp | TACCAGCAAAGCTCTAAGCTGTTGCTTACTAAGAAGGTCCATTGGTaGTTCCTGTTCCACAAGCAAACGCAGCCCTTCAAGACTCCCTCG | + |
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Preference number: 5 (lower is better) Translates to: YQQSSKLLLTKKVHW*FLFHKQTQPFKTPS Trigger: CGAGGGAGTCTTGAAGGGCTGCGTTTGCTTGTGGAACAGGAATCACCAATGGACCTTCTTAGTAAGCAACAGCTTAGAGCTTTGCTGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000281581.5 |
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| CDS TCA 90 bp | AACACAGTTTCGCCTCCAGAATTGCAAGGTCTTTCTTTAGCTCACTaGCCTCTTGTTCCCAATACCTTATTGATTCGTGTAGTCGTGCTA | + |
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Preference number: 5 (lower is better) Translates to: NTVSPPELQGLSLAH*PLVPNTLLIRVVVL Trigger: TAGCACGACTACACGAATCAATAAGGTATTGGGAACAAGAGGTCAGTGAGCTAAAGAAAGACCTTGCAATTCTGGAGGCGAAACTGTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000281581.5 ENST00000537690.7 ENST00000556996.1 |
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| CDS TCA 90 bp | GTTATAGTTTCGCCTCCAGAATTGCAAGGTCTTTCTTTAGCTCACTaGCCTCTTGTTCCCAATACCTTATTGATTCGTGTAGTCGTGCTA | + |
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Preference number: 5 (lower is better) Translates to: VIVSPPELQGLSLAH*PLVPNTLLIRVVVL Trigger: TAGCACGACTACACGAATCAATAAGGTATTGGGAACAAGAGGTCAGTGAGCTAAAGAAAGACCTTGCAATTCTGGAGGCGAAACTATAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556936.5 |
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| CDS GCA 90 bp | TTTTCATCTCTTTCACGCAGCTTGTCTGTTAGATTGTTTATGTCTTaGAAGGTCTCTTCACCATTGTCCACCAAGATCTTAACTGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FSSLSRSLSVRLFMS*KVSSPLSTKILTVV Trigger: GACCACAGTTAAGATCTTGGTGGACAATGGTGAAGAGACCTTGCAAGACATAAACAATCTAACAGACAAGCTGCGTGAAAGAGATGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS CCA 72 bp | GCTCCAGCGCCTCGACCGCGACCGAGGAGCCCAGGGTaGAGGGTAAGGTGCATAACTCCAGGGAGGGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: APAPRPRPRSPG*RVRCITPGRGQ Trigger: CTGGCCCCTCCCTGGAGTTATGCACCTTACCCTCCACCCTGGGCTCCTCGGTCGCGGTCGAGGCGCTGGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS GCA 72 bp | TCCATAGTTTGGTTGAGTGACAGGACAAACCTTGCATaGTTCCTTGCTAGCTCTTCCTGCTTCTCCCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SIVWLSDRTNLA*FLASSSCFSPR Trigger: TCTGGGGGAGAAGCAGGAAGAGCTAGCAAGGAAGCATGCAAGGTTTGTCCTGTCACTCAACCAAACTATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS TCA 72 bp | TCGCCTCCAGAATTGCAAGGTCTTTCTTTAGCTCACTaGCCTCTTGTTCCCAATACCTTATTGATTCGTGTA | + |
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Preference number: 6 (lower is better) Translates to: SPPELQGLSLAH*PLVPNTLLIRV Trigger: TACACGAATCAATAAGGTATTGGGAACAAGAGGTCAGTGAGCTAAAGAAAGACCTTGCAATTCTGGAGGCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000281581.5 ENST00000537690.7 ENST00000556936.5 ENST00000556996.1 |
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| CDS GCA 72 bp | TTCTCTCGTAGGTCTTTGTATTCCATACGAGCAGCATaGAGTGTTTCAACCAGCTGTTTTATCTTGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FSRRSLYSIRAA*SVSTSCFILFR Trigger: CCTGAACAAGATAAAACAGCTGGTTGAAACACTGCATGCTGCTCGTATGGAATACAAAGACCTACGAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS CAA 72 bp | TGTCTGGCAAGAGTTTTCATTTTCTCTCGTAGGTCTTaGTATTCCATACGAGCAGCATGCAGTGTTTCAACC | + |
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Preference number: 6 (lower is better) Translates to: CLARVFIFSRRS*YSIRAACSVST Trigger: GGTTGAAACACTGCATGCTGCTCGTATGGAATACAAAGACCTACGAGAGAAAATGAAAACTCTTGCCAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS GCA 72 bp | CTTTCACGCAGCTTGTCTGTTAGATTGTTTATGTCTTaGAAGGTCTCTTCACCATTGTCCACCAAGATCTTA | + |
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Preference number: 6 (lower is better) Translates to: LSRSLSVRLFMS*KVSSPLSTKIL Trigger: TAAGATCTTGGTGGACAATGGTGAAGAGACCTTGCAAGACATAAACAATCTAACAGACAAGCTGCGTGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS GCA 72 bp | TCTTCTTTTGATGTTACCAGCAAAGCTCTAAGCTGTTaGTTACTAAGAAGGTCCATTGGTGATTCCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSFDVTSKALSC*LLRRSIGDSCS Trigger: GGAACAGGAATCACCAATGGACCTTCTTAGTAAGCAACAGCTTAGAGCTTTGCTGGTAACATCAAAAGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000281581.5 |
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| CDS CAA 72 bp | GCTCTTCCTGCTTCTCCCCCAGAGCTTCATTATATTTaGTCAGGTCAGTTATTTTCTTCTTCAGAAGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: ALPASPPELHYI*SGQLFSSSEAL Trigger: TAGAGCTTCTGAAGAAGAAAATAACTGACCTGACAAAATATAATGAAGCTCTGGGGGAGAAGCAGGAAGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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| CDS TCA 72 bp | CTTATTGATTCGTGTAGTCGTGCTATCTCTAAATTGTaGTCACTAAGAACCGCTGCGGAAACAGTAACTGTT | + |
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Preference number: 6 (lower is better) Translates to: LIDSCSRAISKL*SLRTAAETVTV Trigger: AACAGTTACTGTTTCCGCAGCGGTTCTTAGTGATCACAATTTAGAGATAGCACGACTACACGAATCAATAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000281581.5 ENST00000537690.7 ENST00000556936.5 ENST00000556996.1 |
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| CDS CAA 90 bp | ATCTTATATTGTCTGGCAAGAGTTTTCATTTTCTCTCGTAGGTCTTaGTATTCCATACGAGCAGCATGCAGTGTTTCAACCAGCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: ILYCLARVFIFSRRS*YSIRAACSVSTSCF Trigger: AAAACAGCTGGTTGAAACACTGCATGCTGCTCGTATGGAATACAAAGACCTACGAGAGAAAATGAAAACTCTTGCCAGACAATATAAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000281581.5 ENST00000537690.7 |
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