Pregenerated sensors for CCDC112 (Homo sapiens)
Ensembl gene IDs: ENSG00000164221Ensembl transcript IDs: ENST00000379611.10, ENST00000395557.4, ENST00000503027.1, ENST00000506442.5, ENST00000512261.5
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGCCACCGGTGCCTGGGGATTCGTGGCAGGCGCACCCTGGCCTCTaGAGACAGCTCCCTGCGCTGCGGGCTTGGCCGGGATGCAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: RPPVPGDSWQAHPGL*RQLPALRAWPGCRA Trigger: CGCCCTGCATCCCGGCCAAGCCCGCAGCGCAGGGAGCTGTCTGCAGAGGCCAGGGTGCGCCTGCCACGAATCCCCAGGCACCGGTGGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506442.5 |
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| CDS GCA 90 bp | CCCGGCTACCGCGGTGGCCGCAGCCGCTACCACAACCGTCGTCAGTaGGGCCATGTTTACCCGCCGAGCTACTCGGGCCGCGGCGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: PGYRGGRSRYHNRRQ*GHVYPPSYSGRGGH Trigger: GTGGCCGCCGCGGCCCGAGTAGCTCGGCGGGTAAACATGGCCGCACTGACGACGGTTGTGGTAGCGGCTGCGGCCACCGCGGTAGCCGGG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000379611.10 ENST00000503027.1 ENST00000506442.5 |
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| CDS TCA 90 bp | AAAGGACGAATTCCACCTGAAGTACTAAAACAGCCATCACTCTGTTaGGGCGCTGGCGTCGCTCCCACGCCGGTCCCGGTGGCCGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: KGRIPPEVLKQPSLC*GAGVAPTPVPVAAP Trigger: GGGCGCGGCCACCGGGACCGGCGTGGGAGCGACGCCAGCGCCTCAACAGAGTGATGGCTGTTTTAGTACTTCAGGTGGAATTCGTCCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379611.10 ENST00000506442.5 |
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| CDS TCA 90 bp | TTGTGTTCCCAGCGCCGGTACAGTAACAGAGCTGCCACCAATTACTaGGCACAGAGTCCCCCTCCAATCAAGCACTGTGCCAGGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LCSQRRYSNRAATNY*AQSPPPIKHCARGS Trigger: GGAGCCCCTGGCACAGTGCTTGATTGGAGGGGGACTCTGTGCTCAGTAATTGGTGGCAGCTCTGTTACTGTACCGGCGCTGGGAACACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000395557.4 |
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| CDS CCA 72 bp | CGCCGAGCTACTCGGGCCGCGGCGGCCACCGGTGCCTaGGGATTCGTGGCAGGCGCACCCTGGCCTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: RRATRAAAATGA*GFVAGAPWPLQ Trigger: CTGCAGAGGCCAGGGTGCGCCTGCCACGAATCCCCAGGCACCGGTGGCCGCCGCGGCCCGAGTAGCTCGGCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000379611.10 ENST00000503027.1 ENST00000506442.5 |
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| CDS GCA 72 bp | TACCCGCCGAGCTACTCGGGCCGCGGCGGCCACCGGTaGCTGGGGATTCGTGGCAGGCGCACCCTGGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: YPPSYSGRGGHR*LGIRGRRTLAS Trigger: AGAGGCCAGGGTGCGCCTGCCACGAATCCCCAGGCACCGGTGGCCGCCGCGGCCCGAGTAGCTCGGCGGGTA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000379611.10 ENST00000503027.1 ENST00000506442.5 |
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| CDS GCA 72 bp | CGCGGTGGCCGCAGCCGCTACCACAACCGTCGTCAGTaGGGCCATGTTTACCCGCCGAGCTACTCGGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: RGGRSRYHNRRQ*GHVYPPSYSGR Trigger: GCGGCCCGAGTAGCTCGGCGGGTAAACATGGCCGCACTGACGACGGTTGTGGTAGCGGCTGCGGCCACCGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000379611.10 ENST00000503027.1 ENST00000506442.5 |
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| CDS TCA 72 bp | ATTCCACCTGAAGTACTAAAACAGCCATCACTCTGTTaGGGCGCTGGCGTCGCTCCCACGCCGGTCCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: IPPEVLKQPSLC*GAGVAPTPVPV Trigger: CACCGGGACCGGCGTGGGAGCGACGCCAGCGCCTCAACAGAGTGATGGCTGTTTTAGTACTTCAGGTGGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000379611.10 ENST00000506442.5 |
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| CDS CCA 72 bp | TTATCTTTTTCCATGTTAATTACTCTGTTGAGGCGCTaGCGTCGCTCCCACGCCGGTCCCGGTGGCCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: LSFSMLITLLRR*RRSHAGPGGRA Trigger: GGCGCGGCCACCGGGACCGGCGTGGGAGCGACGCCAGCGCCTCAACAGAGTAATTAACATGGAAAAAGATAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000503027.1 |
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| CDS TCA 72 bp | CAGCGCCGGTACAGTAACAGAGCTGCCACCAATTACTaGGCACAGAGTCCCCCTCCAATCAAGCACTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: QRRYSNRAATNY*AQSPPPIKHCA Trigger: GGCACAGTGCTTGATTGGAGGGGGACTCTGTGCTCAGTAATTGGTGGCAGCTCTGTTACTGTACCGGCGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000395557.4 |
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| CDS CAA 72 bp | ACCTCTGCCTCCGACCATCCCATATTGTCTTTCTCCTaGTGTTCCCAGCGCCGGTACAGTAACAGAGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TSASDHPILSFS*CSQRRYSNRAA Trigger: GGCAGCTCTGTTACTGTACCGGCGCTGGGAACACAAGGAGAAAGACAATATGGGATGGTCGGAGGCAGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000395557.4 ENST00000512261.5 |
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| CDS CAA 90 bp | ACTGGAAACACCTCTGCCTCCGACCATCCCATATTGTCTTTCTCCTaGTGTTCCCAGCGCCGGTACAGTAACAGAGCTGCCACCAATTAC | + |
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Preference number: 6 (lower is better) Translates to: TGNTSASDHPILSFS*CSQRRYSNRAATNY Trigger: GTAATTGGTGGCAGCTCTGTTACTGTACCGGCGCTGGGAACACAAGGAGAAAGACAATATGGGATGGTCGGAGGCAGAGGTGTTTCCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000395557.4 ENST00000512261.5 |
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| CDS CAA 72 bp | TGTCTACATTTACTTCAGGCTTCTTTCAGCACATCTTaGCCCCTTGAATTTAGTCTAACAGTAAGGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: CLHLLQASFSTS*PLEFSLTVRSS Trigger: AGAACTCCTTACTGTTAGACTAAATTCAAGGGGCAAAGATGTGCTGAAAGAAGCCTGAAGTAAATGTAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512261.5 |
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