Pregenerated sensors for CBWD3 (Homo sapiens)

Ensembl gene IDs: ENSG00000196873

Ensembl transcript IDs: ENST00000377349.6, ENST00000478048.5, ENST00000618921.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTGGTCTCTGCTTCCAAGATGGTACCTCAAAAGCTGTGTCCTCCTaGGGGGATGAACACTGTGTGTTCACAGTTCCACATGGCTGGAGA	+
Preference number: 5 (lower is better) Translates to: AGLCFQDGTSKAVSS*GDEHCVFTVPHGWR Trigger: TCTCCAGCCATGTGGAACTGTGAACACACAGTGTTCATCCCCTCAGGAGGACACAGCTTTTGAGGTACCATCTTGGAAGCAGAGACCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000618921.4
CDS CCA 90 bp	GAAGTCCAAAATCAACGTGCCAGGAAGTTTGTGTCTAGTGAGGGCTaGTCTCTGCTTCCAAGATGGTACCTCAAAAGCTGTGTCCTCCTG	+
Preference number: 5 (lower is better) Translates to: EVQNQRARKFVSSEG*SLLPRWYLKSCVLL Trigger: CAGGAGGACACAGCTTTTGAGGTACCATCTTGGAAGCAGAGACCAGCCCTCACTAGACACAAACTTCCTGGCACGTTGATTTTGGACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618921.4
CDS-3UTR CAA 90 bp	AACTCTTCTAGGGTCTATGGTAGACTAGTGATCACTGTCCTTGGAAACTTAACTGAGTGCTACTATGTGTaGGGTAACTCTTCTAGGGTC	+
Preference number: 5 (lower is better) Translates to: NSSRVYGRLVITVLGNLTECYYV*GNSSRV Trigger: GACCCTAGAAGAGTTACCCAACACATAGTAGCACTC...AGTTAAGTTTCCAAGGACAGTGATCACTAGTCTACCATAGACCCTAGAAGAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377349.6 ENST00000478048.5
CDS CCA 72 bp	GGGGATGAACACTGTGTGTTCACAGTTCCACATGGCTaGAGAGGCCTCACAATCATGGCAGAAGGTGAAAGG	+
Preference number: 6 (lower is better) Translates to: GDEHCVFTVPHG*RGLTIMAEGER Trigger: CCTTTCACCTTCTGCCATGATTGTGAGGCCTCTCCAGCCATGTGGAACTGTGAACACACAGTGTTCATCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618921.4
CDS TCA 72 bp	TGCTTCCAAGATGGTACCTCAAAAGCTGTGTCCTCCTaGGGGGATGAACACTGTGTGTTCACAGTTCCACAT	+
Preference number: 6 (lower is better) Translates to: CFQDGTSKAVSS*GDEHCVFTVPH Trigger: ATGTGGAACTGTGAACACACAGTGTTCATCCCCTCAGGAGGACACAGCTTTTGAGGTACCATCTTGGAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000618921.4
CDS CAA 90 bp	ACAGTTCTAGAGGCTATGAAGTCCAAAATCAACGTGCCAGGAAGTTaGTGTCTAGTGAGGGCTGGTCTCTGCTTCCAAGATGGTACCTCA	+
Preference number: 6 (lower is better) Translates to: TVLEAMKSKINVPGS*CLVRAGLCFQDGTS Trigger: TGAGGTACCATCTTGGAAGCAGAGACCAGCCCTCACTAGACACAAACTTCCTGGCACGTTGATTTTGGACTTCATAGCCTCTAGAACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618921.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu