RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAVIN4 (Homo sapiens)

Ensembl gene IDs: ENSG00000170681

Ensembl transcript IDs: ENST00000307584.6

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTaGTCATCACAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCC +
Preference number: 1 (lower is better)
Translates to: LWVCFLFPQNVYHFL*SSQQSSEAGSRGQP
Trigger: GGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 90 bp CCCCCAGAATGTGTACCATTTCCTTTGATCATCACAACAGTCCTCTaGGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGAG +
Preference number: 1 (lower is better)
Translates to: PPECVPFPLIITTVL*GRQQRPTLSIFTDE
Trigger: CTCATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTGTGATGATCAAAGGAAATGGTACACATTCTGGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 90 bp GGCCACAATATTAATCCTAACCAATATTTAGAGTTCTCCTGCAAATaGCGGCCGCAAAGTTGCCCTTACCAAACACGTAACTGGCCCAAC +
Preference number: 1 (lower is better)
Translates to: GHNINPNQYLEFSCK*RPQSCPYQTRNWPN
Trigger: GTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTGCGGCCGTCATTTGCAGGAGAACTCTAAATATTGGTTAGGATTAATATTGTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 90 bp GGTAACAACATGAACGATATTATGATTTCATGTATTCATGCAAGGTaGAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAACATCT +
Preference number: 1 (lower is better)
Translates to: GNNMNDIMISCIHAR*RGNDAESDSQTQTS
Trigger: AGATGTTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATACATGAAATCATAATATCGTTCATGTTGTTACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAATCACAACAGTCCTCTaGGGCAGGCAGCAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKITTVL*GRQQRP
Trigger: TGGCCTCTGCTGCCTGCCTCAGAGGACTGTTGTGAT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAGAGTTCTCCTGCAAATaGCGGCCGCAAAGTTGCCCT +
Preference number: 2 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKEFSCK*RPQSCP
Trigger: AGGGCAACTTTGCGGCCGTCATTTGCAGGAGAACTC...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGAGGAAACTATTTTTCTaGTGGACAAGAGAAAGGAAC +
Preference number: 2 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMRKLFF*WTRERN
Trigger: GTTCCTTTCTCTTGTCCACCAGAAAAATAGTTTCCT...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAACTGTTTTGGACAGCTaGACCCTGAAGGGTACACTC +
Preference number: 2 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKTVLDS*TLKGTL
Trigger: GAGTGTACCCTTCAGGGTCCAGCTGTCCAAAACAGT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAACTTATTGATTGGTGCTaGGGGCTTTTTCAGAAGGTG +
Preference number: 2 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKLIDWC*GLFQKV
Trigger: CACCTTCTGAAAAAGCCCTCAGCACCAATCAATAAG...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAACAAATCTGTTGATCTaGACATCTGGACGATATAAC +
Preference number: 2 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKTNLLI*TSGRYN
Trigger: GTTATATCGTCCAGATGTTCAGATCAACAGATTTGT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR GCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGTGTTTTCTCTGGGTGTaGTTCTTGTTCCCCCAGAAT +
Preference number: 2 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKCFLWV*FLFPQN
Trigger: ATTCTGGGGGAACAAGAAGCACACCCAGAGAAAACA...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGAAATTAGAAAGGGTCTaGCTGGGGAACATTTTGAGA +
Preference number: 2 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKKLERV*LGNILR
Trigger: TCTCAAAATGTTCCCCAGCCAGACCCTTTCTAATTT...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp TGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTaGTCATCACAACAGTCCTCTGAGGCAGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: CFLFPQNVYHFL*SSQQSSEAGSR
Trigger: TCTGCTGCCTGCCTCAGAGGACTGTTGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR GCA 72 bp TTTGGAGGAACTGATGAGGCTTGTTTTCTCTGGGTGTaGTTCTTGTTCCCCCAGAATGTGTACCATTTCCTT +
Preference number: 3 (lower is better)
Translates to: FGGTDEACFLWV*FLFPQNVYHFL
Trigger: AAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGAAAACAAGCCTCATCAGTTCCTCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CAA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGAATGAGTTATTCCCCTTaGAGGCTGGCCACAATATTA +
Preference number: 3 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGMSYSP*RLATIL
Trigger: TAATATTGTGGCCAGCCTCAAAGGGGAATAACTCAT...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CAA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGATGTGTACCATTTCCTTaGATCATCACAACAGTCCTC +
Preference number: 3 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGCVPFP*IITTVL
Trigger: GAGGACTGTTGTGATGATCAAAGGAAATGGTACACA...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CAA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGATCTTTCCATTCTGTTTaGGAGGAACTGATGAGGCTT +
Preference number: 3 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGSFHSV*EELMRL
Trigger: AAGCCTCATCAGTTCCTCCAAAACAGAATGGAAAGA...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR-3UTR CAA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGCCTATCAACACTGTTTaGGACAGCTGGACCCTGAAG +
Preference number: 3 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKPINTV*DSWTLK
Trigger: CTTCAGGGTCCAGCTGTCCAAAACAGTGTTGATAGG...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp ATTAATCCTAACCAATATTTAGAGTTCTCCTGCAAATaGCGGCCGCAAAGTTGCCCTTACCAAACACGTAAC +
Preference number: 3 (lower is better)
Translates to: INPNQYLEFSCK*RPQSCPYQTRN
Trigger: GTTACGTGTTTGGTAAGGGCAACTTTGCGGCCGTCATTTGCAGGAGAACTCTAAATATTGGTTAGGATTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp CAACCCTCTCCATTTTTACTGATGAGAATAAGCAGATaGCTTGCCCAGGGTTTTCTTATAAGTAAAGCTATG +
Preference number: 3 (lower is better)
Translates to: QPSPFLLMRISR*LAQGFLISKAM
Trigger: CATAGCTTTACTTATAAGAAAACCCTGGGCAAGTCATCTGCTTATTCTCATCAGTAAAAATGGAGAGGGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp GGTGTGACTGCTAATTTACTAACAAATCTGTTGATCTaGACATCTGGACGATATAACCCACACATGAGTTAT +
Preference number: 3 (lower is better)
Translates to: GVTANLLTNLLI*TSGRYNPHMSY
Trigger: ATAACTCATGTGTGGGTTATATCGTCCAGATGTTCAGATCAACAGATTTGTTAGTAAATTAGCAGTCACACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp CTGAATCAGACTCCCAAACCCAAACATCTGAGTAACTaGGTCAAATATTTTAAAGCCGATTTATGTATGCCT +
Preference number: 3 (lower is better)
Translates to: LNQTPKPKHLSN*VKYFKADLCMP
Trigger: AGGCATACATAAATCGGCTTTAAAATATTTGACTCAGTTACTCAGATGTTTGGGTTTGGGAGTCTGATTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR TCA 72 bp ATGAACGATATTATGATTTCATGTATTCATGCAAGGTaGAGAGGAAATGATGCTGAATCAGACTCCCAAACC +
Preference number: 3 (lower is better)
Translates to: MNDIMISCIHAR*RGNDAESDSQT
Trigger: GGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATACATGAAATCATAATATCGTTCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGCCTGTCTCAGCCTCCTaGGTAGCTGGGACAGGCGCA +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMPVSAS*VAGTGA
Trigger: TGCGCCTGTCCCAGCTACTCAGGAGGCTGAGACAGG...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGGAGGATACACCGGCCTaGCTGCCTCGTGTTCTGGTT +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMEDTPA*LPRVLV
Trigger: AACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTC...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGCTCTTCTGGCTTGCCTaGACACTGTCCACGATGGAG +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMLFWLA*TLSTME
Trigger: CTCCATCGTGGACAGTGTGCAGGCAAGCCAGAAGAG...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGATACACCGGCCTGGCTaGCTCGTGTTCTGGTTCACT +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMIHRPG*LVFWFT
Trigger: AGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTAT...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGCCACACCCATCTCCCTaGCACATTCCTCACCTTCAG +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMPHPSP*HIPHLQ
Trigger: CTGAAGGTGAGGAATGTGCCAGGGAGATGGGTGTGG...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACAACTCGCTCCTGGCAATaGTGTCCACACCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITTRSWQ*CPHPSP
Trigger: GGGAGATGGGTGTGGACATCATTGCCAGGAGCGAGT...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAACAGAGTAGAGCTCACTaGTGGGGCCCAGAGACTCGC +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKQSRAH*WGPETR
Trigger: GCGAGTCTCTGGGCCCCATCAGTGAGCTCTACTCTG...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGCATTTCCAAACCCAATaGATCAGGGCCGACTTTAGA +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMHFQTQ*IRADFR
Trigger: TCTAAAGTCGGCCCTGATGCATTGGGTTTGGAAATG...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTATCACAACAGTCCTCTaGGGCAGGCAGCAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSITTVL*GRQQRP
Trigger: TGGCCTCTGCTGCCTGCCTCAGAGGACTGTTGTGAT...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACATGGACAGCTGGACCCTaGAGGGTACACTCAGGAAAA +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITWTAGP*RVHSGK
Trigger: TTTTCCTGAGTGTACCCTTCAGGGTCCAGCTGTCCA...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAGCTGGGACAGGCGCATaGCACCATGCCCAGCTAATT +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKAGTGA*HHAQLI
Trigger: AATTAGCTGGGCATGGTGGCATGCGCCTGTCCCAGC...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCGCACACTGTCCACGATaGAGGCTACTTTGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIIAHCPR*RLLCPA
Trigger: TGCTGGACAAAGTAGCCTCCATCGTGGACAGTGTGC...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACAGGCTGCCTCGTGTTCTaGTTCACTGAGCTCATCAGA +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITGCLVF*FTELIR
Trigger: TCTGATGAGCTCAGTGAACCAGAACACGAGGCAGCC...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACAATTTCCCTTCCTTCATaGGGAGGATACACCGGCCTG +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITISLPS*GGYTGL
Trigger: CAGGCCGGTGTATCCTCCCCATGAAGGAAGGGAAAT...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGTGTATTCATGCAAGGTaGAGAGGAAATGATGCTGAA +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMCIHAR*RGNDAE
Trigger: TTCAGCATCATTTCCTCTTCACCTTGCATGAATACA...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAAGCCTCTCTCCTGACTaGCTTAGCCTCTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKSLSPD*LSLSLL
Trigger: GAGGAGAGAGAGGCTAAGGCAGTCAGGAGAGAGGCT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTAATGTGCTCCTTGCCTaGCTTCCTAAGCCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSNVLLA*LPKPGR
Trigger: TCTGCCAGGCTTAGGAAGTCAGGCAAGGAGCACATT...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGGATACTAGAGCCAAATaGTCAAGTCCAAAACTTCAA +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMDTRAK*SSPKLQ
Trigger: TTGAAGTTTTGGACTTGAGCATTTGGCTCTAGTATC...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACATCTTCTATTCTCTTCTaGCTTGCCTGCACACTGTCC +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITSSILF*LACTLS
Trigger: GGACAGTGTGCAGGCAAGCCAGAAGAGAATAGAAGA...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACACTTATTGATTGGTGCTaGGGGCTTTTTCAGAAGGTG +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITLIDWC*GLFQKV
Trigger: CACCTTCTGAAAAAGCCCTCAGCACCAATCAATAAG...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCAACCTAGGACCTTATTaGTTGGTGCTGAGGGCTTTT +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIINLGPY*LVLRAF
Trigger: AAAAGCCCTCAGCACCAATCAATAAGGTCCTAGGTT...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCTGTTTTCTCTGGGTGTaGTTCTTGTTCCCCCAGAAT +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIICFLWV*FLFPQN
Trigger: ATTCTGGGGGAACAAGAAGCACACCCAGAGAAAACA...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGAAACAGGAATATTTGTaGTCATTTCCAAACCCAATG +
Preference number: 4 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMKQEYL*SFPNPM
Trigger: CATTGGGTTTGGAAATGACCACAAATATTCCTGTTT...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGGAGTTCTCCTGCAAATaGCGGCCGCAAAGTTGCCCT +
Preference number: 4 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKEFSCK*RPQSCP
Trigger: AGGGCAACTTTGCGGCCGTCATTTGCAGGAGAACTC...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGATGCCCTGTATTGCTATaGGACTGTGAAAGCTTCAAC +
Preference number: 4 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGCPVLL*DCESFN
Trigger: GTTGAAGCTTTCACAGTCGCATAGCAATACAGGGCA...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCCTCGACAGGCGATTCTaGTGGATTTTATCAGCATTT +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIILDRRF*WILSAF
Trigger: AAATGCTGATAAAATCCACCAGAATCGCCTGTCGAG...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR CAA 72 bp AGACCAGCTTTAGTTTCTCTCCAACCTAGGACCTTATaGATTGGTGCTGAGGGCTTTTTCAGAAGGTGTAAC +
Preference number: 4 (lower is better)
Translates to: RPALVSLQPRTL*IGAEGFFRRCN
Trigger: GTTACACCTTCTGAAAAAGCCCTCAGCACCAATCAATAAGGTCCTAGGTTGGAGAGAAACTAAAGCTGGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGCTGGTCGTGAACTTCTaGCCTCAGGTGATTCACCCA +
Preference number: 4 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKLVVNF*PQVIHP
Trigger: TGGGTGAATCACCTGAGGTCAGAAGTTCACGACCAG...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAAAAAAGTGGGATAGCTaGTCGTTGTCCCAACTCTTC +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKKKWDS*SLSQLF
Trigger: GAAGAGTTGGGACAACGATCAGCTATCCCACTTTTT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
43% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCTTCTTGTCAAGATTCTaGCGTGTCTTCTGCATGTTT +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIIFLSRF*RVFCMF
Trigger: AAACATGCAGAAGACACGGCAGAATCTTGACAAGAA...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCGACAGGCGATTCTGGTaGATTTTATCAGCATTTGAA +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIIDRRFW*ILSAFE
Trigger: TTCAAATGCTGATAAAATCCACCAGAATCGCCTGTC...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCTCTGGACGGATTTTATaGCATTTTCCATTTCCCTGT +
Preference number: 4 (lower is better)
Translates to: SLGVLLVPPECVPFPLIISGRIL*HFPFPC
Trigger: ACAGGGAAATGGAAAATGCCATAAAATCCGTCCAGA...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTCACCGAAACTTCTCCTaGAATATTACCACGCGGAAT +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSHRNFS*NITTRN
Trigger: ATTCCGCGTGGTAATATTCCAGGAGAAGTTTCGGTG...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTAAGATAAGGAGAATCTaGCTTCCTCCCAAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSKIRRI*LPPKAA
Trigger: AGCTGCTTTGGGAGGAAGCCAGATTCTCCTTATCTT...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR CAA 72 bp GGCTTTTTCAGAAGGTGTAACTCTTTCCATTCTGTTTaGGAGGAACTGATGAGGCTTGTTTTCTCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: GFFRRCNSFHSV*EELMRLVFSGC
Trigger: ACACCCAGAGAAAACAAGCCTCATCAGTTCCTCCAAAACAGAATGGAAAGAGTTACACCTTCTGAAAAAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAATTGCTATGCGACTGTaGAAGCTTCAACAGGTCAAT +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKIAMRL*KLQQVN
Trigger: ATTGACCTGTTGAAGCTTTCACAGTCGCATAGCAAT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGCGTGTTCTGGTTCACTaGGCTCATCAGAGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKRVLVH*AHQSRA
Trigger: AGCTCTACTCTGATGAGCTCAGTGAACCAGAACACG...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCACAACAAATCTGTTGATCTaGACATCTGGACGATATAAC +
Preference number: 4 (lower is better)
Translates to: LGVLLVPPECVPFPLIITTNLLI*TSGRYN
Trigger: GTTATATCGTCCAGATGTTCAGATCAACAGATTTGT...TGTGATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTGTGTACCATTTCCTTTaGTCATCACAACAGTCCTCT +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSVYHFL*SSQQSS
Trigger: AGAGGACTGTTGTGATGATCAAAGGAAATGGTACAC...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAACGAAGACAGATCTACTaGGGGATCAAAGATATCATC +
Preference number: 4 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKRRQIY*GIKDII
Trigger: GATGATATCTTTGATCCCCCAGTAGATCTGTCTTCG...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGTTAAAGGCTCGGGGGTaGGGATTTCCCTTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKLKARG*GFPFLH
Trigger: ATGAAGGAAGGGAAATCCCCACCCCCGAGCCTTTAA...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGACATTGTTCTACTTCCTaGATTCCACGATCTAAAGCT +
Preference number: 4 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGHCSTS*IPRSKA
Trigger: AGCTTTAGATCGTGGAATCCAGGAAGTAGAACAATG...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGATTGATATTATCAATGTaGTCCTTGCCTGACTTCCTA +
Preference number: 4 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGLILSM*SLPDFL
Trigger: TAGGAAGTCAGGCAAGGAGCACATTGATAATATCAA...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGATTCAACAGGTCAATCTaGACGGATTTTATGGCATTT +
Preference number: 4 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGFNRSI*TDFMAF
Trigger: AAATGCCATAAAATCCGTCCAGATTGACCTGTTGAA...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR TCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTCCAAACCCAAACATCTaGGTAACTGAGTCAAATATT +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSPNPNI*VTESNI
Trigger: AATATTTGACTCAGTTACTCAGATGTTTGGGTTTGG...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR GCA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGAAATTTGTTAATGATATaGCCTGTATTGCTATGCGAC +
Preference number: 4 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGNLLMI*PVLLCD
Trigger: GTCGCATAGCAATACAGGGCATATCATTAACAAATT...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTAGGAAACTATTTTTCTaGTGGACAAGAGAAAGGAAC +
Preference number: 4 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSRKLFF*WTRERN
Trigger: GTTCCTTTCTCTTGTCCACCAGAAAAATAGTTTCCT...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000307584.6
3UTR CAA 72 bp TCTGGACGATATAACCCACACATGAGTTATTCCCCTTaGAGGCTGGCCACAATATTAATCCTAACCAATATT +
Preference number: 4 (lower is better)
Translates to: SGRYNPHMSYSP*RLATILILTNI
Trigger: AATATTGGTTAGGATTAATATTGTGGCCAGCCTCAAAGGGGAATAACTCATGTGTGGGTTATATCGTCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CCA 90 bp CTTTCTTTAGCAACAATAGACATTGTTCTACTTCCTGGATTCCACGATCTAAAGAACCACAATCAATTCTaGCACTTGGAGCAAAAAGTC +
Preference number: 4 (lower is better)
Translates to: LSLATIDIVLLPGFHDLKNHNQF*HLEQKV
Trigger: GACTTTTTGCTCCAAGTGCCAGAATTGATTGTGGTT...CTTTAGATCGTGGAATCCAGGAAGTAGAACAATGTCTATTGTTGCTAAAGAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 90 bp CCTTCCTTCATGGGGAGGATACACCGGCCTGGCTGCCTCGTGTTCTaGTTCACTGAGCTCATCAGAGTAGAGCTCACTGATGGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: PSFMGRIHRPGCLVF*FTELIRVELTDGAQ
Trigger: CTGGGCCCCATCAGTGAGCTCTACTCTGATGAGCTCAGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCCATGAAGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS GCA 90 bp GGTGGGGATTTCCCTTCCTTCATGGGGAGGATACACCGGCCTGGCTaGCTCGTGTTCTGGTTCACTGAGCTCATCAGAGTAGAGCTCACT +
Preference number: 5 (lower is better)
Translates to: GGDFPSFMGRIHRPG*LVFWFTELIRVELT
Trigger: AGTGAGCTCTACTCTGATGAGCTCAGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCCATGAAGGAAGGGAAATCCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS GCA 90 bp GACTGTCTCAGCCTCTCCCCTGACTGTCTCAGCCTCTCTCCTGACTaGCTTAGCCTCTCTCTCCTCTCCGGGGTCACTATTCTAGTTCTA +
Preference number: 5 (lower is better)
Translates to: DCLSLSPDCLSLSPD*LSLSLLSGVTILVL
Trigger: TAGAACTAGAATAGTGACCCCGGAGAGGAGAGAGAGGCTAAGGCAGTCAGGAGAGAGGCTGAGACAGTCAGGGGAGAGGCTGAGACAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 90 bp GAGGCTACTTTGTCCAGCACAGTCACAATGGTAAGAGCAGCGTCTTaGTCTTCATCTTCTGTAACACTCGACAGGCGATTCTGGTGGATT +
Preference number: 5 (lower is better)
Translates to: EATLSSTVTMVRAAS*SSSSVTLDRRFWWI
Trigger: AATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGACCAAGACGCTGCTCTTACCATTGTGACTGTGCTGGACAAAGTAGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp CAACAGTCCTCTGAGGCAGGCAGCAGAGGCCAACCCTCTCCATTTTTACTGATGATTCTGTTCACTTTCTaGTCAAGATTCTGCCGTGTC +
Preference number: 5 (lower is better)
Translates to: QQSSEAGSRGQPSPFLLMILFTF*SRFCRV
Trigger: GACACGGCAGAATCTTGACAAGAAAGTGAACAGAAT...CATCAGTAAAAATGGAGAGGGTTGGCCTCTGCTGCCTGCCTCAGAGGACTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCCTCTGGGTGTGCTTCTaGTTCCCCCAGAATGTGTAC +
Preference number: 5 (lower is better)
Translates to: SLGVLLVPPECVPFPLIILWVCF*FPQNVY
Trigger: GTACACATTCTGGGGGAACAAGAAGCACACCCAGAG...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTCTATTCTCTTCTGGCTaGCCTGCACACTGTCCACGA +
Preference number: 5 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSLFSSG*PAHCPR
Trigger: TCGTGGACAGTGTGCAGGCAAGCCAGAAGAGAATAG...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAACGATGGAGGCTACTTaGTCCAGCACAGTCACAATG +
Preference number: 5 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKTMEAT*SSTVTM
Trigger: CATTGTGACTGTGCTGGACAAAGTAGCCTCCATCGT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCATGATATGCCCTGTATaGCTATGCGACTGTGAAAGC +
Preference number: 5 (lower is better)
Translates to: SLGVLLVPPECVPFPLIIMICPV*LCDCES
Trigger: GCTTTCACAGTCGCATAGCAATACAGGGCATATCAT...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp ATCTGGCTTCCTCCCAAAGCAGCTATGATGAACTCCTATCAACACTGTTTTGGACAACCTAGGACCTTATaGATTGGTGCTGAGGGCTTT +
Preference number: 5 (lower is better)
Translates to: IWLPPKAAMMNSYQHCFGQPRTL*IGAEGF
Trigger: AAAGCCCTCAGCACCAATCAATAAGGTCCTAGGTTG...TCCAAAACAGTGTTGATAGGAGTTCATCATAGCTGCTTTGGGAGGAAGCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 90 bp GCAGCGTCTTGGTCTTCATCTTCTGTAACACTCGACAGGCGATTCTaGTGGATTTTATCAGCATTTGAAGCAGACCCATTATGTTCCATT +
Preference number: 5 (lower is better)
Translates to: AASWSSSSVTLDRRF*WILSAFEADPLCSI
Trigger: AATGGAACATAATGGGTCTGCTTCAAATGCTGATAAAATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGACCAAGACGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 90 bp TGCCCTGTATTGCTATGCGACTGTGAAAGCTTCAACAGGTCAATCTaGACGGATTTTATGGCATTTTCCATTTCCCTGTGTCTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: CPVLLCDCESFNRSI*TDFMAFSISLCLSS
Trigger: AGAAGAGAGACACAGGGAAATGGAAAATGCCATAAAATCCGTCCAGATTGACCTGTTGAAGCTTTCACAGTCGCATAGCAATACAGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTGGTAAGAGCAGCGTCTaGGTCTTCATCTTCTGTAAC +
Preference number: 5 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSGKSSV*VFIFCN
Trigger: GTTACAGAAGATGAAGACCAAGACGCTGCTCTTACC...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTTTATCAATGTGCTCCTaGCCTGACTTCCTAAGCCTG +
Preference number: 5 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSLSMCS*PDFLSL
Trigger: CAGGCTTAGGAAGTCAGGCAAGGAGCACATTGATAA...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp TCTCTGGGTGTGCTTCTTGTTCCCCCAGAATGTGTACCATTTCCTTTGATCATCTCTTTCCATTCTGTTTaGGAGGAACTGATGAGGCTT +
Preference number: 5 (lower is better)
Translates to: SLGVLLVPPECVPFPLIISFHSV*EELMRL
Trigger: AAGCCTCATCAGTTCCTCCAAAACAGAATGGAAAGA...GATGATCAAAGGAAATGGTACACATTCTGGGGGAACAAGAAGCACACCCAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 90 bp GCGTCTTGGTCTTCATCTTCTGTAACACTCGACAGGCGATTCTGGTaGATTTTATCAGCATTTGAAGCAGACCCATTATGTTCCATTTTA +
Preference number: 5 (lower is better)
Translates to: ASWSSSSVTLDRRFW*ILSAFEADPLCSIL
Trigger: TAAAATGGAACATAATGGGTCTGCTTCAAATGCTGATAAAATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGACCAAGACGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp CAAAGTTGCCCTTACCAAACACGTAACTGGCCCAACCTAGGAAACTATTTTTCTTTTAACATGAATTTGTaGCTTCTCCACCCGGGCTTT +
Preference number: 5 (lower is better)
Translates to: QSCPYQTRNWPNLGNYFSFNMNL*LLHPGF
Trigger: AAAGCCCGGGTGGAGAAGCAACAAATTCATGTTAAA...AGAAAAATAGTTTCCTAGGTTGGGCCAGTTACGTGTTTGGTAAGGGCAACTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAAATGAGTTATTCCCCTTaGAGGCTGGCCACAATATTA +
Preference number: 5 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKMSYSP*RLATIL
Trigger: TAATATTGTGGCCAGCCTCAAAGGGGAATAACTCAT...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS-3UTR CAA 90 bp GTATTCATGCAAGGTGAAGAGGAAATGATGCTGAATCAGACTCCCAAACCCAAATTGGAAAATGCCTTCTaGATATTATCAATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: VFMQGEEEMMLNQTPKPKLENAF*ILSMCS
Trigger: GGAGCACATTGATAATATCAAGAAGGCATTTTCCAA...TTTGGGTTTGGGAGTCTGATTCAGCATCATTTCCTCTTCACCTTGCATGAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS GCA 72 bp AGCCTCTCCCCTGACTGTCTCAGCCTCTCTCCTGACTaGCTTAGCCTCTCTCTCCTCTCCGGGGTCACTATT +
Preference number: 6 (lower is better)
Translates to: SLSPDCLSLSPD*LSLSLLSGVTI
Trigger: AATAGTGACCCCGGAGAGGAGAGAGAGGCTAAGGCAGTCAGGAGAGAGGCTGAGACAGTCAGGGGAGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 72 bp TTTAAAGGCTCGGGGGTGGGGATTTCCCTTCCTTCATaGGGAGGATACACCGGCCTGGCTGCCTCGTGTTCT +
Preference number: 6 (lower is better)
Translates to: FKGSGVGISLPS*GGYTGLAASCS
Trigger: AGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCCATGAAGGAAGGGAAATCCCCACCCCCGAGCCTTTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS GCA 72 bp TTCCCTTCCTTCATGGGGAGGATACACCGGCCTGGCTaGCTCGTGTTCTGGTTCACTGAGCTCATCAGAGTA +
Preference number: 6 (lower is better)
Translates to: FPSFMGRIHRPG*LVFWFTELIRV
Trigger: TACTCTGATGAGCTCAGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCCATGAAGGAAGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 72 bp ATGGGGAGGATACACCGGCCTGGCTGCCTCGTGTTCTaGTTCACTGAGCTCATCAGAGTAGAGCTCACTGAT +
Preference number: 6 (lower is better)
Translates to: MGRIHRPGCLVF*FTELIRVELTD
Trigger: ATCAGTGAGCTCTACTCTGATGAGCTCAGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 72 bp TGGCTTGCCTGCACACTGTCCACGATGGAGGCTACTTaGTCCAGCACAGTCACAATGGTAAGAGCAGCGTCT +
Preference number: 6 (lower is better)
Translates to: WLACTLSTMEAT*SSTVTMVRAAS
Trigger: AGACGCTGCTCTTACCATTGTGACTGTGCTGGACAAAGTAGCCTCCATCGTGGACAGTGTGCAGGCAAGCCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 90 bp ATTCTCTTCTGGCTTGCCTGCACACTGTCCACGATGGAGGCTACTTaGTCCAGCACAGTCACAATGGTAAGAGCAGCGTCTTGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: ILFWLACTLSTMEAT*SSTVTMVRAASWSS
Trigger: TGAAGACCAAGACGCTGCTCTTACCATTGTGACTGTGCTGGACAAAGTAGCCTCCATCGTGGACAGTGTGCAGGCAAGCCAGAAGAGAAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 90 bp GGAGGCTACTTTGTCCAGCACAGTCACAATGGTAAGAGCAGCGTCTaGGTCTTCATCTTCTGTAACACTCGACAGGCGATTCTGGTGGAT +
Preference number: 6 (lower is better)
Translates to: GGYFVQHSHNGKSSV*VFIFCNTRQAILVD
Trigger: ATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGACCAAGACGCTGCTCTTACCATTGTGACTGTGCTGGACAAAGTAGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 72 bp TTTGTCCAGCACAGTCACAATGGTAAGAGCAGCGTCTaGGTCTTCATCTTCTGTAACACTCGACAGGCGATT +
Preference number: 6 (lower is better)
Translates to: FVQHSHNGKSSV*VFIFCNTRQAI
Trigger: AATCGCCTGTCGAGTGTTACAGAAGATGAAGACCAAGACGCTGCTCTTACCATTGTGACTGTGCTGGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 72 bp TGGTCTTCATCTTCTGTAACACTCGACAGGCGATTCTaGTGGATTTTATCAGCATTTGAAGCAGACCCATTA +
Preference number: 6 (lower is better)
Translates to: WSSSSVTLDRRF*WILSAFEADPL
Trigger: TAATGGGTCTGCTTCAAATGCTGATAAAATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 72 bp TTGCTATGCGACTGTGAAAGCTTCAACAGGTCAATCTaGACGGATTTTATGGCATTTTCCATTTCCCTGTGT +
Preference number: 6 (lower is better)
Translates to: LLCDCESFNRSI*TDFMAFSISLC
Trigger: ACACAGGGAAATGGAAAATGCCATAAAATCCGTCCAGATTGACCTGTTGAAGCTTTCACAGTCGCATAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 72 bp TTGGAAAATGCCTTCTTGATATTATCAATGTGCTCCTaGCCTGACTTCCTAAGCCTGGCAGATCTGCTTTCT +
Preference number: 6 (lower is better)
Translates to: LENAFLILSMCS*PDFLSLADLLS
Trigger: AGAAAGCAGATCTGCCAGGCTTAGGAAGTCAGGCAAGGAGCACATTGATAATATCAAGAAGGCATTTTCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS TCA 72 bp ACCTTTCCTGAGGCTGCGCATCTTAAAAGCTTCCTTTaGGGGAGCTGCATTAGAAATAGATTTCTTAAACCT +
Preference number: 6 (lower is better)
Translates to: TFPEAAHLKSFL*GSCIRNRFLKP
Trigger: AGGTTTAAGAAATCTATTTCTAATGCAGCTCCCTCAAAGGAAGCTTTTAAGATGCGCAGCCTCAGGAAAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CCA 72 bp TCTTCATCTTCTGTAACACTCGACAGGCGATTCTGGTaGATTTTATCAGCATTTGAAGCAGACCCATTATGT +
Preference number: 6 (lower is better)
Translates to: SSSSVTLDRRFW*ILSAFEADPLC
Trigger: ACATAATGGGTCTGCTTCAAATGCTGATAAAATCCACCAGAATCGCCTGTCGAGTGTTACAGAAGATGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 90 bp ACTTTTCGGGTTTTCTCAAACAATTTGTTAATGATATGCCCTGTATaGCTATGCGACTGTGAAAGCTTCAACAGGTCAATCTGGACGGAT +
Preference number: 6 (lower is better)
Translates to: TFRVFSNNLLMICPV*LCDCESFNRSIWTD
Trigger: ATCCGTCCAGATTGACCTGTTGAAGCTTTCACAGTCGCATAGCAATACAGGGCATATCATTAACAAATTGTTTGAGAAAACCCGAAAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 90 bp TTCACTTTCTTGTCAAGATTCTGCCGTGTCTTCTGCATGTTTTCTTaGGAAAATGCCTTCTTGATATTATCAATGTGCTCCTTGCCTGAC +
Preference number: 6 (lower is better)
Translates to: FTFLSRFCRVFCMFS*ENAFLILSMCSLPD
Trigger: GTCAGGCAAGGAGCACATTGATAATATCAAGAAGGCATTTTCCAAAGAAAACATGCAGAAGACACGGCAGAATCTTGACAAGAAAGTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307584.6
CDS CAA 72 bp GTTTTCTCAAACAATTTGTTAATGATATGCCCTGTATaGCTATGCGACTGTGAAAGCTTCAACAGGTCAATC +
Preference number: 6 (lower is better)
Translates to: VFSNNLLMICPV*LCDCESFNRSI
Trigger: GATTGACCTGTTGAAGCTTTCACAGTCGCATAGCAATACAGGGCATATCATTAACAAATTGTTTGAGAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307584.6