RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAV3 (Homo sapiens)

Ensembl gene IDs: ENSG00000182533

Ensembl transcript IDs: ENST00000343849.3, ENST00000397368.2, ENST00000472766.1

Found 211 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTGAGTaGGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTT +
Preference number: 1 (lower is better)
Translates to: GATFLTPVVTGHFPE*AWRGWPRVGTACWF
Trigger: AAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 90 bp CAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGTaGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATT +
Preference number: 1 (lower is better)
Translates to: QRGGSGRLEPRPFPQ*YPGRVTAPASPRVI
Trigger: AATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 90 bp ACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTGAGTGCGCGTaGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTG +
Preference number: 1 (lower is better)
Translates to: TFLTPVVTGHFPECA*RGWPRVGTACWFML
Trigger: CAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 90 bp GGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTAAAGAGAAAGAGCTCGCCAGCAGCC +
Preference number: 1 (lower is better)
Translates to: GPSFLSGFPTPCAPS*GMEQSLKRKSSPAA
Trigger: GGCTGCTGGCGAGCTCTTTCTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR CCA 90 bp AGCGAAGGGCCATTGTGCTTCTGTGGCTGGGCCGTCTTTTCTTTCTaGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTC +
Preference number: 1 (lower is better)
Translates to: SEGPLCFCGWAVFSF*LPYTVCSIMGYGAV
Trigger: GACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAAGCACAATGGCCCTTCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 90 bp TCACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGC +
Preference number: 1 (lower is better)
Translates to: SLVTFLSARGEVGPG*EPRAGLCCYSTSER
Trigger: GCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGAGCAGTCCCTAAAGAGAAAGAGCTC +
Preference number: 1 (lower is better)
Translates to: FCGWAVFSFWLPYTV*SIMGYGAVPKEKEL
Trigger: GAGCTCTTTCTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR GCA 90 bp CGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCAAATGATCTTCCCCCACGCCCAGGC +
Preference number: 1 (lower is better)
Translates to: RVLVYVVTVQVNAKT*SSCLLANDLPPRPG
Trigger: GCCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR TCA 90 bp CCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTaGACGCAAAGACTTGCAGTAGCTGCCTCTTGGCAAATGATCTTC +
Preference number: 1 (lower is better)
Translates to: PRVGTACWFMLLQYK*TQRLAVAASWQMIF
Trigger: GAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 90 bp GTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTaGCTCTTGGCAAATGATCTTCCCCCACGCCCAGGCATGGGGGCA +
Preference number: 1 (lower is better)
Translates to: VYVVTVQVNAKTCSS*LLANDLPPRPGMGA
Trigger: TGCCCCCATGCCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 90 bp CCTGCCAGCCCAAGGGTCATTTTCCTCCATTGGTGCCCATTTTTGTaGTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGAACG +
Preference number: 1 (lower is better)
Translates to: PASPRVIFLHWCPFL*SGNRSHLNMIFQGT
Trigger: CGTTCCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATGGAGGAAAATGACCCTTGGGCTGGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR TCA 90 bp AGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCAGTaGAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACA +
Preference number: 1 (lower is better)
Translates to: SEETTNSPCVCFSGQ*SIFLELVRTQTNLT
Trigger: TGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp ACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGAGCGAAGGGCCATTGTaGTTCTGTGGCTGGGCCGTC +
Preference number: 2 (lower is better)
Translates to: TGHFPECAWRGWPRVGTASEGPL*FCGWAV
Trigger: GACGGCCCAGCCACAGAAGCACAATGGCCCTTCGCT...CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CAA 90 bp GGCATTTCAGGGGCTCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTaGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTG +
Preference number: 2 (lower is better)
Translates to: GISGARLAKGEVPGG*NPGPSLSGTLEGSL
Trigger: CAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGAGCCCCTGAAATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CCCTCAGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTGCATCATGGTGGGGCTaGGGGAGAGCGAAGGGCCAT +
Preference number: 2 (lower is better)
Translates to: PSVVPWKGHCPCQPKGHFASWWG*GRAKGH
Trigger: ATGGCCCTTCGCTCTCCCCCAGCCCCACCATGATGC...AAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CTCAGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTA +
Preference number: 2 (lower is better)
Translates to: LSGTLEGSLPLPAQGSFSEVGPG*EPRAGL
Trigger: TAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTC...GGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp TCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCTGCGCGTGGAGAGGTTaGCCCCGGGTGGGAACCGCG +
Preference number: 2 (lower is better)
Translates to: SSHLLRAKVPSCQMAVLGCAWRG*PRVGTA
Trigger: CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCA...GCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp ACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTGCCGTCTTTTCTTTCTaGCTTCCCTACACCGTGTGC +
Preference number: 2 (lower is better)
Translates to: TFLSARGEVGPGWEPRAGAVFSF*LPYTVC
Trigger: GCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGC...ACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp ACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCA +
Preference number: 2 (lower is better)
Translates to: TGHFPECAWRGWPRVGTAVNAKT*SSCLLA
Trigger: TGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCAC...CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp GGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCTTGTGCTTCTGTGGCTaGGCCGTCTTTTCTTTCTGG +
Preference number: 2 (lower is better)
Translates to: GRLEPRPFPQWYPGRVTALCFCG*AVFSFW
Trigger: CCAGAAAGAAAAGACGGCCCAGCCACAGAAGCACAA...GGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR TCA 90 bp GGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTCACTGGTCACTTTCCTaGGTGCGCGTGGAGAGGTTG +
Preference number: 2 (lower is better)
Translates to: GRRYPHVKWQYWAFQGLGHWSLS*VRVERL
Trigger: CAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTG...ACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp AGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCGCCGTCTTTTCTTTCTaGCTTCCCTACACCGTGTGC +
Preference number: 2 (lower is better)
Translates to: SGTLEGSLPLPAQGSFSSAVFSF*LPYTVC
Trigger: GCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGC...GGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp GCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTTAGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTA +
Preference number: 2 (lower is better)
Translates to: AKVPSCQMAVLGISGARLEVGPG*EPRAGL
Trigger: TAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTC...TAACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp GAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGCACCACCCCCTGCCCTaGCACCGCTGTTGCCCCACC +
Preference number: 2 (lower is better)
Translates to: EPRAGLCCYSTSERKDLQHHPLP*HRCCPT
Trigger: GGTGGGGCAACAGCGGTGGCAGGGCAGGGGGTGGTG...CTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR-3UTR GCA 90 bp CCATTGGTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTTGGCCCACCACCCCCTaGCCTGCCACCGCTGTTGCC +
Preference number: 2 (lower is better)
Translates to: PLVPIFVLRQQESLKHDLWPTTP*PATAVA
Trigger: GGCAACAGCGGTGGCAGGGCAGGGGGTGGTGGGCCA...AAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR-3UTR CCA 90 bp GCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTTACCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTG +
Preference number: 2 (lower is better)
Translates to: AKVPSCQMAVLGISGARLPCAPS*GMEQSL
Trigger: CAGGGACTGCTCCATACCCCATGATGGAGCACACGG...TAACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000397368.2
3UTR-3UTR CCA 90 bp AAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGTCATTTTCCTCCATTaGTGCCCATTTTTGTGCTCA +
Preference number: 2 (lower is better)
Translates to: KGEVPGGLNPGPSLSGTLVIFLH*CPFLCS
Trigger: TGAGCACAAAAATGGGCACCAATGGAGGAAAATGAC...CAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CAA 90 bp GTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCACGCCCAGGCATGGGGGCATCATGG +
Preference number: 2 (lower is better)
Translates to: VVTVQVNAKTCSSCL*ANDLPPRPGMGASW
Trigger: CCATGATGCCCCCATGCCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR TCA 90 bp AAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGTTGTTACAGTACAAGTaGACGCAAAGACTTGCAGTA +
Preference number: 2 (lower is better)
Translates to: KGEVPGGLNPGPSLSGTLLLQYK*TQRLAV
Trigger: TACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAA...CAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR TCA 90 bp TGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGAACGTGTACGGTTCTGCCTCTTGGCAAATaGTCTTCCCCCACGCCCAGG +
Preference number: 2 (lower is better)
Translates to: CSGNRSHLNMIFQGTCTVLPLGK*SSPTPR
Trigger: CCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAG...AACCGTACACGTTCCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp AAAACCCTTTACTGGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGA +
Preference number: 2 (lower is better)
Translates to: KTLYWSHLPNASGHWSLSLPYTV*SIMGYG
Trigger: TCCATACCCCATGATGGAGCACACGGTGTAGGGAAG...GGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCATGGGGGCATCATGGTaGGGCTGGGGGAGAGCGAAG +
Preference number: 2 (lower is better)
Translates to: LVYVVTVQVNAKTCSSCLMGASW*GWGRAK
Trigger: CTTCGCTCTCCCCCAGCCCCACCATGATGCCCCCAT...GAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp GCACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCGCAGTAGCTGCCTCTTaGCAAATGATCTTCCCCCAC +
Preference number: 2 (lower is better)
Translates to: AQIRPCSFVTSPEGEGTLAVAAS*QMIFPH
Trigger: GTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGC...GAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp TCAGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTAGTGAAGTATATTTTTaGAGCTGGTCAGGACACAAA +
Preference number: 2 (lower is better)
Translates to: SVVPWKGHCPCQPKGHFPSEVYF*SWSGHK
Trigger: TTTGTGTCCTGACCAGCTCCAAAAATATACTTCACT...AGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGAACGTGTACGGTTCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGA +
Preference number: 2 (lower is better)
Translates to: CSGNRSHLNMIFQGTCTVLPYTV*SIMGYG
Trigger: TCCATACCCCATGATGGAGCACACGGTGTAGGGAAG...AACCGTACACGTTCCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TTAAACATGATCTTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAGGTCACTTTCCTGAGTaGGCGTGGAGAGGTTGGCCC +
Preference number: 2 (lower is better)
Translates to: LNMIFQGTCTVPANNRIRGHFPE*AWRGWP
Trigger: GGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACC...TCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAAGATCATGTTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp ACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCGCCATTGTGCTTCTGTaGCTGGGCCGTCTTTTCTTT +
Preference number: 2 (lower is better)
Translates to: TFGQVKRQPTLPVSVFQGAIVLL*LGRLFF
Trigger: AAAGAAAAGACGGCCCAGCCACAGAAGCACAATGGC...GCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCAAATGCAGCCAGCCATTGTGCTTCTGTaGCTGGGCCGTCTTTTCTTT +
Preference number: 2 (lower is better)
Translates to: HKPILQARTKCSIPQMQPAIVLL*LGRLFF
Trigger: AAAGAAAAGACGGCCCAGCCACAGAAGCACAATGGC...TGGCTGCATTTGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACCGGGTGGGAACCGCGTaGTGGTTTATGTTGTTACAG +
Preference number: 2 (lower is better)
Translates to: FRAVKYIFGAGQDTNQSYRVGTA*WFMLLQ
Trigger: CTGTAACAACATAAACCAGCACGCGGTTCCCACCCG...GTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGTATATTTTTGGAGCTaGTCAGGACACAAACCAATC +
Preference number: 2 (lower is better)
Translates to: HLLRAKVPSCQMAVLGISVYFWS*SGHKPI
Trigger: GATTGGTTTGTGTCCTGACCAGCTCCAAAAATATAC...TGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCA +
Preference number: 2 (lower is better)
Translates to: FRAVKYIFGAGQDTNQSYVNAKT*SSCLLA
Trigger: TGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCAC...GTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp ATCTTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAACGGGTGGGAACCGCGTaGTGGTTTATGTTGTTACAG +
Preference number: 2 (lower is better)
Translates to: IFQGTCTVPANNRIRRRKRVGTA*WFMLLQ
Trigger: CTGTAACAACATAAACCAGCACGCGGTTCCCACCCG...TTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp CATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAAGTGAAGTATATTTTTaGAGCTGGTCAGGACACAAA +
Preference number: 2 (lower is better)
Translates to: HLLRAKVPSCQMAVLGISSEVYF*SWSGHK
Trigger: TTTGTGTCCTGACCAGCTCCAAAAATATACTTCACT...TGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAAAGACAGGCACGAACAAAATaGAGCATTCCCCAAATGCAG +
Preference number: 2 (lower is better)
Translates to: FQGTCTVPANNRIRRRKRQARTK*SIPQMQ
Trigger: CTGCATTTGGGGAATGCTGCATTTTGTTCGTGCCTG...TCTTTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp TTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAAAGAGTGGGAACCGCGTGCTaGTTTATGTTGTTACAGTAC +
Preference number: 2 (lower is better)
Translates to: FQGTCTVPANNRIRRRKRVGTAC*FMLLQY
Trigger: GTACTGTAACAACATAAACCAGCACGCGGTTCCCAC...TCTTTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CCA 90 bp AAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAGTGGGAACCGCGTGCTaGTTTATGTTGTTACAGTAC +
Preference number: 2 (lower is better)
Translates to: KYIFGAGQDTNQSYRHEQVGTAC*FMLLQY
Trigger: GTACTGTAACAACATAAACCAGCACGCGGTTCCCAC...TTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR GCA 90 bp TTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAAGACTTGCAGTAGCTaGCTCTTGGCAAATGATCTT +
Preference number: 2 (lower is better)
Translates to: FRAVKYIFGAGQDTNQSYKTCSS*LLANDL
Trigger: AAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTT...GTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp ACGCCAGTGGTCACTGGTCACTTTCCTGAGTGCGCGTaGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGG +
Preference number: 3 (lower is better)
Translates to: TPVVTGHFPECA*RGWPRVGTACW
Trigger: CCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGACCACTGGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp GGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGTaGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCA +
Preference number: 3 (lower is better)
Translates to: GSGRLEPRPFPQ*YPGRVTAPASP
Trigger: TGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 72 bp TTCCTAACGCCAGTGGTCACTGGTCACTTTCCTGAGTaGGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCG +
Preference number: 3 (lower is better)
Translates to: FLTPVVTGHFPE*AWRGWPRVGTA
Trigger: CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGACCACTGGCGTTAGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 72 bp CTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCCCTaGCAGCCCAAGGGTCATTTTCCTCCATTGGTGCCC +
Preference number: 3 (lower is better)
Translates to: LPSVVPWKGHCP*QPKGHFPPLVP
Trigger: GGGCACCAATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp GTCACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTaGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTG +
Preference number: 3 (lower is better)
Translates to: VTGHFPECAWRG*PRVGTACWFML
Trigger: CAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CAA 90 bp GCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAGAGAGCGAAGGGCCATaGTGCTTCTGTGGCTGGGCC +
Preference number: 3 (lower is better)
Translates to: APGGNRVLVYVVTVQVNAESEGP*CFCGWA
Trigger: GGCCCAGCCACAGAAGCACAATGGCCCTTCGCTCTC...TGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp ACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTATGTTGTTACAGTACA +
Preference number: 3 (lower is better)
Translates to: TFLSARGEVGPG*EPRAGLCCYST
Trigger: TGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CAA 90 bp GGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTCATTGGTGCCCATTTTaGTGCTCAGGCAACAGGAGT +
Preference number: 3 (lower is better)
Translates to: GRRYPHVKWQYWAFQGLGHWCPF*CSGNRS
Trigger: ACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATG...ACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 72 bp TGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGAGCAGTCCCTAAAGAG +
Preference number: 3 (lower is better)
Translates to: WAVFSFWLPYTV*SIMGYGAVPKE
Trigger: CTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR GCA 72 bp GTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTaGCTCTTGGCAAATGATCTTCCCCCACGCCCAGGC +
Preference number: 3 (lower is better)
Translates to: VTVQVNAKTCSS*LLANDLPPRPG
Trigger: GCCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CAA 90 bp TGTTCTTCACTTACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGAGAGCGAAGGGCCATaGTGCTTCTGTGGCTGGGCC +
Preference number: 3 (lower is better)
Translates to: CSSLTFGQVKRQPTLPVSESEGP*CFCGWA
Trigger: GGCCCAGCCACAGAAGCACAATGGCCCTTCGCTCTC...AGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp TTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTAAAGAGAAAGAGCTCG +
Preference number: 3 (lower is better)
Translates to: FLSGFPTPCAPS*GMEQSLKRKSS
Trigger: CGAGCTCTTTCTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR-3UTR CAA 90 bp GTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGTGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCA +
Preference number: 3 (lower is better)
Translates to: VPIFVLRQQESLKHDLPRCSSCL*ANDLPP
Trigger: TGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCA...CCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR-3UTR CAA 90 bp AAGACTCTGTTCTTCACTTACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCA +
Preference number: 3 (lower is better)
Translates to: KTLFFTYIWPSEETTNSPCSSCL*ANDLPP
Trigger: TGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCA...GGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACAGAGTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 72 bp CCAAGGGTCATTTTCCTCCATTGGTGCCCATTTTTGTaGTCAGGCAACAGGAGTCACTTAAACATGATCTTC +
Preference number: 3 (lower is better)
Translates to: PRVIFLHWCPFL*SGNRSHLNMIF
Trigger: GAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATGGAGGAAAATGACCCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR GCA 72 bp GTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCAAATGATCTTCCCCCA +
Preference number: 3 (lower is better)
Translates to: VYVVTVQVNAKT*SSCLLANDLPP
Trigger: TGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CCA 72 bp TCTGTTTTTCAGGGCAGTGAAGTATATTTTTGGAGCTaGTCAGGACACAAACCAATCTTACAGGCACGAACA +
Preference number: 3 (lower is better)
Translates to: SVFQGSEVYFWS*SGHKPILQART
Trigger: TGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAAAAACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR TCA 72 bp GAAAAAGACTCTGTTCTTCACTTACATTTGGCCAAGTaGAGAGACAACCAACTCTCCCTGTGTCTGTTTTTC +
Preference number: 3 (lower is better)
Translates to: EKDSVLHLHLAK*RDNQLSLCLFF
Trigger: GAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACAGAGTCTTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp AGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCCACCACCCCCTGCCCTaGCACCGCTGTTGCCCCACC +
Preference number: 4 (lower is better)
Translates to: SGTLEGSLPLPAQGSFSSHHPLP*HRCCPT
Trigger: GGTGGGGCAACAGCGGTGGCAGGGCAGGGGGTGGTG...GGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp GGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCATGGGGGCATCATGGTaGGGCTGGGGGAGAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GRLEPRPFPQWYPGRVTAMGASW*GWGRAK
Trigger: CTTCGCTCTCCCCCAGCCCCACCATGATGCCCCCAT...GGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
3UTR CAA 72 bp GGGGCTCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTaGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAA +
Preference number: 4 (lower is better)
Translates to: GARLAKGEVPGG*NPGPSLSGTLE
Trigger: TTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCGGTCACTTTCCTGAGTaGGCGTGGAGAGGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: GRLEPRPFPQWYPGRVTAGHFPE*AWRGWP
Trigger: GGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACC...GGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCACCCTGGAAGGGTCACTaGCCCTGCCAGCCCAAGGGT +
Preference number: 4 (lower is better)
Translates to: VVPWKGHCPCQPKGHFPPPWKGH*PCQPKG
Trigger: ACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGG...TGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGATGGGGGCATCATGGTaGGGCTGGGGGAGAGCGAAG +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQMGASW*GWGRAK
Trigger: CTTCGCTCTCCCCCAGCCCCACCATGATGCCCCCAT...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TGGTCACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAATTTCCTGAGTGCGCGTaGAGAGGTTGGCCCCGGGTG +
Preference number: 4 (lower is better)
Translates to: WSLVTFLSARGEVGPGWEFPECA*RGWPRV
Trigger: CACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAA...TTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp ACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTCTTCGTCACATCTCCTaGGGGCGAAGGTACCCTCAT +
Preference number: 4 (lower is better)
Translates to: TFLSARGEVGPGWEPRAGLRHIS*GRRYPH
Trigger: ATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAG...ACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CTCAGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCGGACGCCCAGCAGCGTaGACAACAGACGGTAGCACC +
Preference number: 4 (lower is better)
Translates to: LSGTLEGSLPLPAQGSFSGRPAA*TTDGST
Trigger: GGTGCTACCGTCTGTTGTCCACGCTGCTGGGCGTCC...GGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGAGCGAAGGGCCATTGTaGTTCTGTGGCTGGGCCGTC +
Preference number: 4 (lower is better)
Translates to: AWRGWPRVGTACWFMLLQSEGPL*FCGWAV
Trigger: GACGGCCCAGCCACAGAAGCACAATGGCCCTTCGCT...CTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TCACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGAAGGGTCACTGCCCCTaGCAGCCCAAGGGTCATTTT +
Preference number: 4 (lower is better)
Translates to: SLVTFLSARGEVGPGWEPKGHCP*QPKGHF
Trigger: AAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTT...CGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCTGCGCGTGGAGAGGTTaGCCCCGGGTGGGAACCGCG +
Preference number: 4 (lower is better)
Translates to: FLSGFPTPCAPSWGMEQSCAWRG*PRVGTA
Trigger: CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCA...GGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp ACTGGTCACTTTCCTGAGTGCGCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGGTGAGTAGATGTGGCTaGTGCACTGGATCTCGATCA +
Preference number: 4 (lower is better)
Translates to: TGHFPECAWRGWPRVGTAVSRCG*CTGSRS
Trigger: TGATCGAGATCCAGTGCATCAGCCACATCTACTCAC...CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCACCCTGGAAGGGTCACTaGCCCTGCCAGCCCAAGGGT +
Preference number: 4 (lower is better)
Translates to: APGGNRVLVYVVTVQVNAPWKGH*PCQPKG
Trigger: ACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGG...TGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGCCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTA +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQPCAPS*GMEQSL
Trigger: TAGGGACTGCTCCATACCCCATGATGGAGCACACGG...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp GGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCGCAGTAGCTGCCTCTTaGCAAATGATCTTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: GRLEPRPFPQWYPGRVTAAVAAS*QMIFPH
Trigger: GTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGC...GGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTTGCGCGTGGAGAGGTTaGCCCCGGGTGGGAACCGCG +
Preference number: 4 (lower is better)
Translates to: CSFVTSPEGEGTLMSNGSCAWRG*PRVGTA
Trigger: CGCGGTTCCCACCCGGGGCCAACCTCTCCACGCGCA...ACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGCAGTGGATATCCTTaGCGATCTGGGCCTCGAGAT +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQCSGYP*RSGPRD
Trigger: ATCTCGAGGCCCAGATCGTCAAGGATATCCACTGCA...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp GAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATTGGTGCCCATCACTGGTCACTTTCCTaGGTGCGCGTGGAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: EGSLPLPAQGSFSSIGAHHWSLS*VRVERL
Trigger: CAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTG...ATGGGCACCAATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGA +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQLPYTV*SIMGYG
Trigger: TCCATACCCCATGATGGAGCACACGGTGTAGGGAAG...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTCCAGAGCAGGGCCAGTaGGACGCCCAGCAGCGTGGA +
Preference number: 4 (lower is better)
Translates to: CSFVTSPEGEGTLMSNGSPEQGQ*DAQQRG
Trigger: TCCACGCTGCTGGGCGTCCCACTGGCCCTGCTCTGG...ACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGGCCAAAACCCTTTACTaGAGCCACCTTCCTAACGCC +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQAKTLY*SHLPNA
Trigger: GGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTTTGGC...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCCCCTCAGTGGTACCCTaGAAGGGTCACTGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: SSHLLRAKVPSCQMAVLGPSVVP*KGHCPC
Trigger: GCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGG...GCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGAGGTTCCGGGAGGCTTaGACCCAGGCCCTTCCCTCA +
Preference number: 4 (lower is better)
Translates to: FVTSPEGEGTLMSNGSTGRFREA*TQALPS
Trigger: TGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCT...CCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCCAGGGCCGCGAAGAGTaGGTTGCAGAAGGTGCGGAT +
Preference number: 4 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSIQGREE*VAEGAD
Trigger: ATCCGCACCTTCTGCAACCCACTCTTCGCGGCCCTG...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCACAGGGCCGCGAAGAGTaGGTTGCAGAAGGTGCGGAT +
Preference number: 4 (lower is better)
Translates to: APGGNRVLVYVVTVQVNAQGREE*VAEGAD
Trigger: ATCCGCACCTTCTGCAACCCACTCTTCGCGGCCCTG...TGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCAGCCGTCTTTTCTTTCTaGCTTCCCTACACCGTGTGC +
Preference number: 4 (lower is better)
Translates to: VVPWKGHCPCQPKGHFPPAVFSF*LPYTVC
Trigger: GCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGC...TGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGAGCGAAGGGCCATTGTaGTTCTGTGGCTGGGCCGTC +
Preference number: 4 (lower is better)
Translates to: FVTSPEGEGTLMSNGSTGSEGPL*FCGWAV
Trigger: GACGGCCCAGCCACAGAAGCACAATGGCCCTTCGCT...CCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: AWRGWPRVGTACWFMLLQVNAKT*SSCLLA
Trigger: TGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCAC...CTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCGAGATCCGAGCTGTGTaGCCGGCTGGGGCTGAAAAT +
Preference number: 4 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSIEIRAV*PAGAEN
Trigger: ATTTTCAGCCCCAGCCGGCCACACAGCTCGGATCTC...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp AGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATATCCTTGACGATCTaGGCCTCGAGATCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: SGTLEGSLPLPAQGSFSSISLTI*ASRSVC
Trigger: GCACACAGATCTCGAGGCCCAGATCGTCAAGGATAT...GGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTGCATCATGGTGGGGCTaGGGGAGAGCGAAGGGCCAT +
Preference number: 4 (lower is better)
Translates to: CSFVTSPEGEGTLMSNGSASWWG*GRAKGH
Trigger: ATGGCCCTTCGCTCTCCCCCAGCCCCACCATGATGC...ACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGCCCTCAGTGGTACCCTaGAAGGGTCACTGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: SFLSGFPTPCAPSWGMEQPSVVP*KGHCPC
Trigger: GCAGGGGCAGTGACCCTTCCAGGGTACCACTGAGGG...CTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATTGGTGCCCATGTCAAATGGCAGTACTaGGCATTTCAGGGGCTCGGT +
Preference number: 4 (lower is better)
Translates to: EGSLPLPAQGSFSSIGAHVKWQY*AFQGLG
Trigger: ACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGAC...ATGGGCACCAATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATAGTACTTGGAGACAGTaGAGGTGGTGTAGCTCACCT +
Preference number: 4 (lower is better)
Translates to: WYPGRVTAPASPRVIFLHSTWRQ*RWCSSP
Trigger: AGGTGAGCTACACCACCTTCACTGTCTCCAAGTACT...ATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp AAACCCTTTACTGGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTCTGCCTCTTGGCAAATaGTCTTCCCCCACGCCCAGG +
Preference number: 4 (lower is better)
Translates to: KPFTGATFLTPVVTGHFPLPLGK*SSPTPR
Trigger: CCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAG...AGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCACTGGTCACTTTCCTaGGTGCGCGTGGAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: FVTSPEGEGTLMSNGSTGHWSLS*VRVERL
Trigger: CAACCTCTCCACGCGCACTCAGGAAAGTGACCAGTG...CCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGTGCAGAAGGTGCGGATaGAGAGTGAGTAGATGTGGC +
Preference number: 4 (lower is better)
Translates to: VAGPSFLSGFPTPCAPSWCRRCG*RVSRCG
Trigger: GCCACATCTACTCACTCTGCATCCGCACCTTCTGCA...CCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GGGAGGCTTGAACCCAGGCCCTTCCCTCAGTGGTACCCTGGAAGGGTCACTGCCAAGACTTGCAGTAGCTaGCTCTTGGCAAATGATCTT +
Preference number: 4 (lower is better)
Translates to: GRLEPRPFPQWYPGRVTAKTCSS*LLANDL
Trigger: AAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTT...GGCAGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCTGGGTTCAAGCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TCGGTTAGCCAAAGGGGAGGTTCCGGGAGGCTTGAACCCAGGCCCTTCCCTCAGATTTTCCTCCATTGGTaGCCATTTTTGTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: SVSQRGGSGRLEPRPFPQIFLHW*PFLCSG
Trigger: GCCTGAGCACAAAAATGGGCACCAATGGAGGAAAAT...CTGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTCCCCTTTGGCTAACCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGCCAGAGCAGGGCCAGTaGGACGCCCAGCAGCGTGGA +
Preference number: 4 (lower is better)
Translates to: VPIFVLRQQESLKHDLPRPEQGQ*DAQQRG
Trigger: TCCACGCTGCTGGGCGTCCCACTGGCCCTGCTCTGG...CCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCAGTGGGAACCGCGTGCTaGTTTATGTTGTTACAGTAC +
Preference number: 4 (lower is better)
Translates to: VVPWKGHCPCQPKGHFPPVGTAC*FMLLQY
Trigger: GTACTGTAACAACATAAACCAGCACGCGGTTCCCAC...TGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCAGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTA +
Preference number: 4 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSEVGPG*EPRAGL
Trigger: TAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTC...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCCTAAAGAGAAAGAGCAGGCCCTTCCCTCAGTaGTACCCTGGAAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: PTPCAPSWGMEQSLKRKSRPFPQ*YPGRVT
Trigger: AGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCT...GCTCTTTCTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343849.3
3UTR CAA 72 bp GTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCACGCCCAGGCATGGGG +
Preference number: 4 (lower is better)
Translates to: VQVNAKTCSSCL*ANDLPPRPGMG
Trigger: CCCCATGCCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGGTGCGGATGCAGAGTaGGTAGATGTGGCTGATGCA +
Preference number: 4 (lower is better)
Translates to: LAPGGNRVLVYVVTVQVNGADAE*VDVADA
Trigger: TGCATCAGCCACATCTACTCACTCTGCATCCGCACC...GTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACTGGCCCACCACCCCCTaGCCTGCCACCGCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: FRAVKYIFGAGQDTNQSYWPTTP*PATAVA
Trigger: GGCAACAGCGGTGGCAGGGCAGGGGGTGGTGGGCCA...GTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp CTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCCTAGCAGTAGCTGCCTCTTaGCAAATGATCTTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: LSGFPTPCAPSWGMEQSLAVAAS*QMIFPH
Trigger: GTGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGC...TAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCGCCAAAACCCTTTACTaGAGCCACCTTCCTAACGCC +
Preference number: 4 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSIAKTLY*SHLPNA
Trigger: GGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTTTGGC...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGTGCAGTGGATATCCTTaGCGATCTGGGCCTCGAGAT +
Preference number: 4 (lower is better)
Translates to: FVTSPEGEGTLMSNGSTGCSGYP*RSGPRD
Trigger: ATCTCGAGGCCCAGATCGTCAAGGATATCCACTGCA...CCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCAGTACTTGGAGACAGTaGAGGTGGTGTAGCTCACCT +
Preference number: 4 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSISTWRQ*RWCSSP
Trigger: AGGTGAGCTACACCACCTTCACTGTCTCCAAGTACT...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp CTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCACTGCCTCTTGGCAAATaGTCTTCCCCCACGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LVRTQTNLTGTNKMQHSPLPLGK*SSPTPR
Trigger: CCTGGGCGTGGGGGAAGATCATTTGCCAAGAGGCAG...TGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCATCTGTGTGCTCTTCTaGCATCATCGCAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: FLSGFPTPCAPSWGMEQSICVLF*HHRRAG
Trigger: CCCAGCTCTGCGATGATGGCAGAAGAGCACACAGAT...GGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp GGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCAAATGCAGGGACGCCCAGCAGCGTaGACAACAGACGGTAGCACC +
Preference number: 4 (lower is better)
Translates to: GHKPILQARTKCSIPQMQGRPAA*TTDGST
Trigger: GGTGCTACCGTCTGTTGTCCACGCTGCTGGGCGTCC...CTGCATTTGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGGCATCATGGTGGGGCTaGGGGAGAGCGAAGGGCCAT +
Preference number: 4 (lower is better)
Translates to: EPRAGLCCYSTSERKDLQASWWG*GRAKGH
Trigger: ATGGCCCTTCGCTCTCCCCCAGCCCCACCATGATGC...CTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTTTCCTGAGTGCGCGTaGAGAGGTTGGCCCCGGGTG +
Preference number: 4 (lower is better)
Translates to: EPRAGLCCYSTSERKDLQFPECA*RGWPRV
Trigger: CACCCGGGGCCAACCTCTCCACGCGCACTCAGGAAA...CTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp CTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCAGGTTCCGGGAGGCTTaGACCCAGGCCCTTCCCTCA +
Preference number: 4 (lower is better)
Translates to: LVYVVTVQVNAKTCSSCLRFREA*TQALPS
Trigger: TGAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCT...GAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp AAACCCTTTACTGGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTGGTGCCCACAGGCTCTaGGATCACGTCTTCAAAATC +
Preference number: 4 (lower is better)
Translates to: KPFTGATFLTPVVTGHFPGAHRL*DHVFKI
Trigger: GATTTTGAAGACGTGATCGCAGAGCCTGTGGGCACC...AGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp AAACCCTTTACTGGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTGTCAAATGGCAGTACTaGGCATTTCAGGGGCTCGGT +
Preference number: 4 (lower is better)
Translates to: KPFTGATFLTPVVTGHFPVKWQY*AFQGLG
Trigger: ACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGAC...AGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATTGTTTTTCAGGGCAGTaGAGTATATTTTTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: WYPGRVTAPASPRVIFLHCFSGQ*SIFLEL
Trigger: CAGCTCCAAAAATATACTTCACTGCCCTGAAAAACA...ATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGCAGAAGGTGCGGATaGAGAGTGAGTAGATGTGGC +
Preference number: 4 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSCRRCG*RVSRCG
Trigger: GCCACATCTACTCACTCTGCATCCGCACCTTCTGCA...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCACTTCCCTACACCGTGTaGTCCATCATGGGGTATGGA +
Preference number: 4 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSLPYTV*SIMGYG
Trigger: TCCATACCCCATGATGGAGCACACGGTGTAGGGAAG...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp GTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTAAAGACTTGCAGTAGCTaGCTCTTGGCAAATGATCTT +
Preference number: 4 (lower is better)
Translates to: VERLAPGGNRVLVYVVTVKTCSS*LLANDL
Trigger: AAGATCATTTGCCAAGAGGCAGCTACTGCAAGTCTT...TACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp ACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCAAGGGTCACTGCCCCTaGCAGCCCAAGGGTCATTTT +
Preference number: 4 (lower is better)
Translates to: TFGQVKRQPTLPVSVFQGKGHCP*QPKGHF
Trigger: AAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTT...GCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTGTCATTTTCCTCCATTaGTGCCCATTTTTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: GRRYPHVKWQYWAFQGLGVIFLH*CPFLCS
Trigger: TGAGCACAAAAATGGGCACCAATGGAGGAAAATGAC...ACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TCCCTGTGTCTGTTTTTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACCCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SLCLFFRAVKYIFGAGQDPCAPS*GMEQSL
Trigger: CAGGGACTGCTCCATACCCCATGATGGAGCACACGG...GTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAAAAACAGACACAGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000397368.2
CDS-3UTR GCA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCAGTGAACGCAAAGACTTaGAGTAGCTGCCTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSVNAKT*SSCLLA
Trigger: TGCCAAGAGGCAGCTACTGCAAGTCTTTGCGTTCAC...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp ATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCAGCGGGTGGGAACCGCGTaGTGGTTTATGTTGTTACAG +
Preference number: 4 (lower is better)
Translates to: IWPSEETTNSPCVCFSGQRVGTA*WFMLLQ
Trigger: CTGTAACAACATAAACCAGCACGCGGTTCCCACCCG...CTGCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGCAGGCACGAACAAAATaGAGCATTCCCCAAATGCAG +
Preference number: 4 (lower is better)
Translates to: SFLSGFPTPCAPSWGMEQQARTK*SIPQMQ
Trigger: CTGCATTTGGGGAATGCTGCATTTTGTTCGTGCCTG...CTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACATTTTCCTCCATTGGTaGCCATTTTTGTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: LAPGGNRVLVYVVTVQVNIFLHW*PFLCSG
Trigger: GCCTGAGCACAAAAATGGGCACCAATGGAGGAAAAT...GTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACTCAATCTCCTTGCAGTaGATATCCTTGACGATCTGG +
Preference number: 4 (lower is better)
Translates to: LAPGGNRVLVYVVTVQVNSISLQ*ISLTIW
Trigger: CCAGATCGTCAAGGATATCCACTGCAAGGAGATTGA...GTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp ATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCAGGCCGTCTTTTCTTTCTaGCTTCCCTACACCGTGTGC +
Preference number: 4 (lower is better)
Translates to: IWPSEETTNSPCVCFSGQAVFSF*LPYTVC
Trigger: GCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGC...CTGCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTACTGGGCATTTCAGTGGGAACCGCGTGCTaGTTTATGTTGTTACAGTAC +
Preference number: 4 (lower is better)
Translates to: HLLRAKVPSCQMAVLGISVGTAC*FMLLQY
Trigger: GTACTGTAACAACATAAACCAGCACGCGGTTCCCAC...TGAAATGCCCAGTACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTAAACATGATCTTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAGAGGTTGGCCCCGGGTaGGAACCGCGTGCTGGTTTA +
Preference number: 4 (lower is better)
Translates to: LNMIFQGTCTVPANNRIREVGPG*EPRAGL
Trigger: TAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTC...TCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAAGATCATGTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CCATTGGTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTAGGCCCTTCCCTCAGTaGTACCCTGGAAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: PLVPIFVLRQQESLKHDLRPFPQ*YPGRVT
Trigger: AGTGACCCTTCCAGGGTACCACTGAGGGAAGGGCCT...AAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp GCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAGGCACGGTGCGGATGCAGAGTaGGTAGATGTGGCTGATGCA +
Preference number: 4 (lower is better)
Translates to: AVKYIFGAGQDTNQSYRHGADAE*VDVADA
Trigger: TGCATCAGCCACATCTACTCACTCTGCATCCGCACC...GTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp CTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCCTATTGTTACAGTACAAGTaGACGCAAAGACTTGCAGTA +
Preference number: 4 (lower is better)
Translates to: LSGFPTPCAPSWGMEQSLLLQYK*TQRLAV
Trigger: TACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAA...TAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR TCA 90 bp TGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTTTACATTTGGCCAAGTaGAGAGACAACCAACTCTCC +
Preference number: 4 (lower is better)
Translates to: CSFVTSPEGEGTLMSNGSLHLAK*RDNQLS
Trigger: GGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAA...ACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp GCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAGGCACCTTCGTCACATCTCCTaGGGGCGAAGGTACCCTCAT +
Preference number: 4 (lower is better)
Translates to: AVKYIFGAGQDTNQSYRHLRHIS*GRRYPH
Trigger: ATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAG...GTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp TGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGAACGTGTACGGTTGGTGCCCACAGGCTCTaGGATCACGTCTTCAAAATC +
Preference number: 4 (lower is better)
Translates to: CSGNRSHLNMIFQGTCTVGAHRL*DHVFKI
Trigger: GATTTTGAAGACGTGATCGCAGAGCCTGTGGGCACC...AACCGTACACGTTCCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp AGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAAGGTCACTTTCCTGAGTaGGCGTGGAGAGGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: SIFLELVRTQTNLTGTNKGHFPE*AWRGWP
Trigger: GGGCCAACCTCTCCACGCGCACTCAGGAAAGTGACC...TTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAAAGACCATCATCGCAGAGCTaGGGGGATCCACAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: FQGTCTVPANNRIRRRKRPSSQS*GDPQEE
Trigger: CTCCTCCTGTGGATCCCCCCAGCTCTGCGATGATGG...TCTTTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CCA 90 bp CTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCATTGTGCTTCTGTGGCTaGGCCGTCTTTTCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LVRTQTNLTGTNKMQHSPLCFCG*AVFSFW
Trigger: CCAGAAAGAAAAGACGGCCCAGCCACAGAAGCACAA...TGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp TTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACTGTTTTTCAGGGCAGTaGAGTATATTTTTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: LAPGGNRVLVYVVTVQVNCFSGQ*SIFLEL
Trigger: CAGCTCCAAAAATATACTTCACTGCCCTGAAAAACA...GTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp CTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCGCCTCGAGATCTGTGTaGTCTTCTGCCATCATCGCA +
Preference number: 4 (lower is better)
Translates to: LVYVVTVQVNAKTCSSCLASRSV*SSAIIA
Trigger: TGCGATGATGGCAGAAGAGCACACAGATCTCGAGGC...GAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCAAAATATCCTTGACGATCTaGGCCTCGAGATCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: GQDTNQSYRHEQNAAFPKISLTI*ASRSVC
Trigger: GCACACAGATCTCGAGGCCCAGATCGTCAAGGATAT...TTTGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCAGTGAAGTATATTTTTaGAGCTGGTCAGGACACAAA +
Preference number: 4 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSISEVYF*SWSGHK
Trigger: TTTGTGTCCTGACCAGCTCCAAAAATATACTTCACT...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGGTCATTTTCCTCCATTaGTGCCCATTTTTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: PGGNRVLVYVVTVQVNAKVIFLH*CPFLCS
Trigger: TGAGCACAAAAATGGGCACCAATGGAGGAAAATGAC...CTTTGCGTTCACTTGTACTGTAACAACATAAACCAGCACGCGGTTCCCACCCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp ATGATCTTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAGCCTCGAGATCTGTGTaGTCTTCTGCCATCATCGCA +
Preference number: 4 (lower is better)
Translates to: MIFQGTCTVPANNRIRRRASRSV*SSAIIA
Trigger: TGCGATGATGGCAGAAGAGCACACAGATCTCGAGGC...TCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAAGATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp AAACCCTTTACTGGAGCCACCTTCCTAACGCCAGTGGTCACTGGTCACTTTCCTTTCTTCACTTACATTTaGCCAAGTGAAGAGACAACC +
Preference number: 4 (lower is better)
Translates to: KPFTGATFLTPVVTGHFPFFTYI*PSEETT
Trigger: GGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAA...AGGAAAGTGACCAGTGACCACTGGCGTTAGGAAGGTGGCTCCAGTAAAGGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR GCA 90 bp CTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCCAGGCACGAACAAAATaGAGCATTCCCCAAATGCAG +
Preference number: 4 (lower is better)
Translates to: LVYVVTVQVNAKTCSSCLQARTK*SIPQMQ
Trigger: CTGCATTTGGGGAATGCTGCATTTTGTTCGTGCCTG...GAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACGCCATTGTGCTTCTGTaGCTGGGCCGTCTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: FRAVKYIFGAGQDTNQSYAIVLL*LGRLFF
Trigger: AAAGAAAAGACGGCCCAGCCACAGAAGCACAATGGC...GTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCAGTATATTTTTGGAGCTaGTCAGGACACAAACCAATC +
Preference number: 4 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSVYFWS*SGHKPI
Trigger: GATTGGTTTGTGTCCTGACCAGCTCCAAAAATATAC...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp TTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAAAGATTGTGCTTCTGTGGCTaGGCCGTCTTTTCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: FQGTCTVPANNRIRRRKRLCFCG*AVFSFW
Trigger: CCAGAAAGAAAAGACGGCCCAGCCACAGAAGCACAA...TCTTTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCAGTATATTTTTGGAGCTaGTCAGGACACAAACCAATC +
Preference number: 4 (lower is better)
Translates to: LVRTQTNLTGTNKMQHSPVYFWS*SGHKPI
Trigger: GATTGGTTTGTGTCCTGACCAGCTCCAAAAATATAC...TGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp ACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTGTTTTTCAGGGCTTCTTCACTTACATTTaGCCAAGTGAAGAGACAACC +
Preference number: 4 (lower is better)
Translates to: TFGQVKRQPTLPVSVFQGFFTYI*PSEETT
Trigger: GGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAA...GCCCTGAAAAACAGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp CTGGTTTATGTTGTTACAGTACAAGTGAACGCAAAGACTTGCAGTAGCTGCCTCTACCCTCATGTCAAATaGCAGTACTGGGCATTTCAG +
Preference number: 4 (lower is better)
Translates to: LVYVVTVQVNAKTCSSCLYPHVK*QYWAFQ
Trigger: CTGAAATGCCCAGTACTGCCATTTGACATGAGGGTA...GAGGCAGCTACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAACATAAACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp GTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGTTGTTACAGTACAAGTaGACGCAAAGACTTGCAGTA +
Preference number: 4 (lower is better)
Translates to: VPIFVLRQQESLKHDLPRLLQYK*TQRLAV
Trigger: TACTGCAAGTCTTTGCGTTCACTTGTACTGTAACAA...CCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp GGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCCAAAAGTGAAGTATATTTTTaGAGCTGGTCAGGACACAAA +
Preference number: 4 (lower is better)
Translates to: GQDTNQSYRHEQNAAFPKSEVYF*SWSGHK
Trigger: TTTGTGTCCTGACCAGCTCCAAAAATATACTTCACT...TTTGGGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CCA 90 bp AGTCACTTAAACATGATCTTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGATACCCTCATGTCAAATaGCAGTACTGGGCATTTCAG +
Preference number: 4 (lower is better)
Translates to: SHLNMIFQGTCTVPANNRYPHVK*QYWAFQ
Trigger: CTGAAATGCCCAGTACTGCCATTTGACATGAGGGTA...TCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAAGATCATGTTTAAGTGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR TCA 90 bp AGAAAAAGACTCTGTTCTTCACTTACATTTGGCCAAGTGAAGAGACAACCAACTTTACATTTGGCCAAGTaGAGAGACAACCAACTCTCC +
Preference number: 4 (lower is better)
Translates to: RKRLCSSLTFGQVKRQPTLHLAK*RDNQLS
Trigger: GGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAA...AGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACAGAGTCTTTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp CTCAGTGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTTCCGCAGCACCACCTaGATGCTGCTGCAGACCTGG +
Preference number: 5 (lower is better)
Translates to: LSGTLEGSLPLPAQGSFSFRSTT*MLLQTW
Trigger: CCAGGTCTGCAGCAGCATCAAGGTGGTGCTGCGGAA...GGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCACTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp CCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCCTAAAGAGAAAGAGCGCCCTGCCACCGCTGTaGCCCCACCTGGCTTTAGAC +
Preference number: 5 (lower is better)
Translates to: PTPCAPSWGMEQSLKRKSALPPL*PHLALD
Trigger: GTCTAAAGCCAGGTGGGGCAACAGCGGTGGCAGGGC...GCTCTTTCTCTTTAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS-3UTR CAA 90 bp CCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATTGGTGTTGCAGTGGATATCCTaGACGATCTGGGCCTCGAGA +
Preference number: 5 (lower is better)
Translates to: PWKGHCPCQPKGHFPPLVLQWIS*TIWASR
Trigger: TCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAA...CACCAATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCATGTCAAATGGCAGTGAGGTTCCGGGAGGCTaGAACCCAGGCCCTTCCCTC +
Preference number: 5 (lower is better)
Translates to: CSFVTSPEGEGTLMSNGSEVPGG*NPGPSL
Trigger: GAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTC...ACTGCCATTTGACATGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TGTCAAATGGCAGTACTGGGCATTTCAGGGGCTCGGTTAGCCAAAGGGGAGGTTTTCCGCAGCACCACCTaGATGCTGCTGCAGACCTGG +
Preference number: 5 (lower is better)
Translates to: CQMAVLGISGARLAKGEVFRSTT*MLLQTW
Trigger: CCAGGTCTGCAGCAGCATCAAGGTGGTGCTGCGGAA...AACCTCCCCTTTGGCTAACCGAGCCCCTGAAATGCCCAGTACTGCCATTTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGGAGAGCGAAGGGCCATaGTGCTTCTGTGGCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SFLSGFPTPCAPSWGMEQESEGP*CFCGWA
Trigger: GGCCCAGCCACAGAAGCACAATGGCCCTTCGCTCTC...CTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TGGTACCCTGGAAGGGTCACTGCCCCTGCCAGCCCAAGGGTCATTTTCCTCCATTGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCA +
Preference number: 5 (lower is better)
Translates to: WYPGRVTAPASPRVIFLHCSSCL*ANDLPP
Trigger: TGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCA...ATGGAGGAAAATGACCCTTGGGCTGGCAGGGGCAGTGACCCTTCCAGGGTACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS GCA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGAGCAGTCCCTGGCTTTAGACCTCCT +
Preference number: 5 (lower is better)
Translates to: FCGWAVFSFWLPYTV*SIMGYGAVPGFRPP
Trigger: AGGAGGTCTAAAGCCAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397368.2
CDS-3UTR CAA 90 bp AGCTGGTCAGGACACAAACCAATCTTACAGGCACGAACAAAATGCAGCATTCCCGAGAGCGAAGGGCCATaGTGCTTCTGTGGCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SWSGHKPILQARTKCSIPESEGP*CFCGWA
Trigger: GGCCCAGCCACAGAAGCACAATGGCCCTTCGCTCTC...GGGAATGCTGCATTTTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGCATTGGTGCCCATTTTaGTGCTCAGGCAACAGGAGT +
Preference number: 5 (lower is better)
Translates to: WLGRLFFLASLHRVLHHGHWCPF*CSGNRS
Trigger: ACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATG...CCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp GTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACATGATCTTCCAAGGGAGGTTCCGGGAGGCTaGAACCCAGGCCCTTCCCTC +
Preference number: 5 (lower is better)
Translates to: VPIFVLRQQESLKHDLPREVPGG*NPGPSL
Trigger: GAGGGAAGGGCCTGGGTTCAAGCCTCCCGGAACCTC...CCTTGGAAGATCATGTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATGGGGTATGGAGCAGTCCTTGCAGTGGATATCCTaGACGATCTGGGCCTCGAGA +
Preference number: 5 (lower is better)
Translates to: FLSGFPTPCAPSWGMEQSLQWIS*TIWASR
Trigger: TCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAA...GGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TTCTGTGGCTGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCACCAGGTCAATCTCCTaGCAGTGGATATCCTTGACG +
Preference number: 5 (lower is better)
Translates to: FCGWAVFSFWLPYTVCSITRSIS*QWISLT
Trigger: CGTCAAGGATATCCACTGCAAGGAGATTGACCTGGT...GATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCAGCCACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TCCCTGTGTCTGTTTTTCAGGGCAGTGAAGTATATTTTTGGAGCTGGTCAGGACGCCGCGAAGAGTGGGTaGCAGAAGGTGCGGATGCAG +
Preference number: 5 (lower is better)
Translates to: SLCLFFRAVKYIFGAGQDAAKSG*QKVRMQ
Trigger: CTGCATCCGCACCTTCTGCAACCCACTCTTCGCGGC...GTCCTGACCAGCTCCAAAAATATACTTCACTGCCCTGAAAAACAGACACAGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS GCA 90 bp GCTCACCTTCCACACGCCGTCAAAGCTGTAGGTGCCCACAGGCTCTaGGATCACGTCTTCAAAATCCACCTTGACTATGTCCTCGTTAAT +
Preference number: 5 (lower is better)
Translates to: AHLPHAVKAVGAHRL*DHVFKIHLDYVLVN
Trigger: ATTAACGAGGACATAGTCAAGGTGGATTTTGAAGACGTGATCGCAGAGCCTGTGGGCACCTACAGCTTTGACGGCGTGTGGAAGGTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp GCGTGGAGAGGTTGGCCCCGGGTGGGAACCGCGTGCTGGTTTATGTTGTTACAGTCTTCAAAATCCACCTaGACTATGTCCTCGTTAATG +
Preference number: 5 (lower is better)
Translates to: AWRGWPRVGTACWFMLLQSSKST*TMSSLM
Trigger: CATTAACGAGGACATAGTCAAGGTGGATTTTGAAGA...CTGTAACAACATAAACCAGCACGCGGTTCCCACCCGGGGCCAACCTCTCCACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp ATTTTCCTCCATTGGTGCCCATTTTTGTGCTCAGGCAACAGGAGTCACTTAAACGCCGCGAAGAGTGGGTaGCAGAAGGTGCGGATGCAG +
Preference number: 5 (lower is better)
Translates to: IFLHWCPFLCSGNRSHLNAAKSG*QKVRMQ
Trigger: CTGCATCCGCACCTTCTGCAACCCACTCTTCGCGGC...GTTTAAGTGACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATGGAGGAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS CCA 90 bp TTAATGTTCTTGGGGTCTCGGTTCACCAGGTCAATCTCCTTGCAGTaGATATCCTTGACGATCTGGGCCTCGAGATCTGTGTGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: LMFLGSRFTRSISLQ*ISLTIWASRSVCSS
Trigger: AGAAGAGCACACAGATCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAAGAACATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343849.3
ENST00000397368.2
ENST00000472766.1
CDS CCA 90 bp GCCCAGTGCAGGATTTATGAAGTTGTTTGTAAGGTTTCAAGACCCTaGTGGTGCTCGTTCTGCATTCAGGGTTGTGCTTTTCCTGCCCTC +
Preference number: 5 (lower is better)
Translates to: AQCRIYEVVCKVSRP*WCSFCIQGCAFPAL
Trigger: GAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAATCCTGCACTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS-3UTR CAA 90 bp CACAAATTAGACCTTGTTCCTTCGTCACATCTCCTGAGGGCGAAGGTACCCTCACATTGGTGCCCATTTTaGTGCTCAGGCAACAGGAGT +
Preference number: 5 (lower is better)
Translates to: HKLDLVPSSHLLRAKVPSHWCPF*CSGNRS
Trigger: ACTCCTGTTGCCTGAGCACAAAAATGGGCACCAATG...TGAGGGTACCTTCGCCCTCAGGAGATGTGACGAAGGAACAAGGTCTAATTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS GCA 90 bp TATGAAGTTGTTTGTAAGGTTTCAAGACCCTGGTGGTGCTCGTTCTaGATTCAGGGTTGTGCTTTTCCTGCCCTCCATGACCTTGCTTGC +
Preference number: 5 (lower is better)
Translates to: YEVVCKVSRPWWCSF*IQGCAFPALHDLAC
Trigger: GCAAGCAAGGTCATGGAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS GCA 90 bp TGCAGGATTTATGAAGTTGTTTGTAAGGTTTCAAGACCCTGGTGGTaGTCGTTCTGCATTCAGGGTTGTGCTTTTCCTGCCCTCCATGAC +
Preference number: 5 (lower is better)
Translates to: CRIYEVVCKVSRPWW*SFCIQGCAFPALHD
Trigger: GTCATGGAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAATCCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CCA 90 bp CAGTGCAGGATTTATGAAGTTGTTTGTAAGGTTTCAAGACCCTGGTaGTGCTCGTTCTGCATTCAGGGTTGTGCTTTTCCTGCCCTCCAT +
Preference number: 5 (lower is better)
Translates to: QCRIYEVVCKVSRPW*CSFCIQGCAFPALH
Trigger: ATGGAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAATCCTGCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS-3UTR CAA 90 bp TGTTCTTCACTTACATTTGGCCAAGTGAAGAGACAACCAACTCTCCCTGTGTCTACCAGGTCAATCTCCTaGCAGTGGATATCCTTGACG +
Preference number: 5 (lower is better)
Translates to: CSSLTFGQVKRQPTLPVSTRSIS*QWISLT
Trigger: CGTCAAGGATATCCACTGCAAGGAGATTGACCTGGT...AGACACAGGGAGAGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp AAGTATATTTTTGGAGCTGGTCAGGACACAAACCAATCTTACAGGCACGAACAATCCTCGTTAATGTTCTaGGGGTCTCGGTTCACCAGG +
Preference number: 5 (lower is better)
Translates to: KYIFGAGQDTNQSYRHEQSSLMF*GSRFTR
Trigger: CCTGGTGAACCGAGACCCCAAGAACATTAACGAGGA...TTGTTCGTGCCTGTAAGATTGGTTTGTGTCCTGACCAGCTCCAAAAATATACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp TTCCAAGGAACGTGTACGGTTCCAGCAAACAATAGAATCCGAAGAAGAAAAAGATGCAGTAGCTGCCTCTaGGCAAATGATCTTCCCCCA +
Preference number: 5 (lower is better)
Translates to: FQGTCTVPANNRIRRRKRCSSCL*ANDLPP
Trigger: TGGGGGAAGATCATTTGCCAAGAGGCAGCTACTGCA...TCTTTTTCTTCTTCGGATTCTATTGTTTGCTGGAACCGTACACGTTCCTTGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS-3UTR CAA 90 bp AGAAAAAGACTCTGTTCTTCACTTACATTTGGCCAAGTGAAGAGACAACCAACTTCTTCAAAATCCACCTaGACTATGTCCTCGTTAATG +
Preference number: 5 (lower is better)
Translates to: RKRLCSSLTFGQVKRQPTSSKST*TMSSLM
Trigger: CATTAACGAGGACATAGTCAAGGTGGATTTTGAAGA...AGTTGGTTGTCTCTTCACTTGGCCAAATGTAAGTGAAGAACAGAGTCTTTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS CAA 72 bp CAGTCTGGCCCACCACCCCCTGCCCTGCCACCGCTGTaGCCCCACCTGGCTTTAGACCTCCTTCCGCAGCAC +
Preference number: 6 (lower is better)
Translates to: QSGPPPPALPPL*PHLALDLLPQH
Trigger: GTGCTGCGGAAGGAGGTCTAAAGCCAGGTGGGGCAACAGCGGTGGCAGGGCAGGGGGTGGTGGGCCAGACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS CCA 72 bp AGCCCCAGAGCAGGGCCAGTGGGACGCCCAGCAGCGTaGACAACAGACGGTAGCACCAGTACTTGGAGACAG +
Preference number: 6 (lower is better)
Translates to: SPRAGPVGRPAA*TTDGSTSTWRQ
Trigger: CTGTCTCCAAGTACTGGTGCTACCGTCTGTTGTCCACGCTGCTGGGCGTCCCACTGGCCCTGCTCTGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS CCA 72 bp CGAGATCTGTGTGCTCTTCTGCCATCATCGCAGAGCTaGGGGGATCCACAGGAGGAGATCCGAGCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: RDLCALLPSSQS*GDPQEEIRAVW
Trigger: CCACACAGCTCGGATCTCCTCCTGTGGATCCCCCCAGCTCTGCGATGATGGCAGAAGAGCACACAGATCTCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000343849.3
CDS GCA 72 bp TGGGCCGTCTTTTCTTTCTGGCTTCCCTACACCGTGTaGTCCATCATGGGGTATGGAGCAGTCCCTGGCTTT +
Preference number: 6 (lower is better)
Translates to: WAVFSFWLPYTV*SIMGYGAVPGF
Trigger: AAAGCCAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAAAGACGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397368.2
CDS GCA 72 bp CCACACGCCGTCAAAGCTGTAGGTGCCCACAGGCTCTaGGATCACGTCTTCAAAATCCACCTTGACTATGTC +
Preference number: 6 (lower is better)
Translates to: PHAVKAVGAHRL*DHVFKIHLDYV
Trigger: GACATAGTCAAGGTGGATTTTGAAGACGTGATCGCAGAGCCTGTGGGCACCTACAGCTTTGACGGCGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS CCA 72 bp TTGGGGTCTCGGTTCACCAGGTCAATCTCCTTGCAGTaGATATCCTTGACGATCTGGGCCTCGAGATCTGTG +
Preference number: 6 (lower is better)
Translates to: LGSRFTRSISLQ*ISLTIWASRSV
Trigger: CACAGATCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343849.3
ENST00000397368.2
ENST00000472766.1
CDS CCA 72 bp TTTCTTTCTGGCTTCCCTACACCGTGTGCTCCATCATaGGGTATGGAGCAGTCCCTGGCTTTAGACCTCCTT +
Preference number: 6 (lower is better)
Translates to: FLSGFPTPCAPS*GMEQSLALDLL
Trigger: AAGGAGGTCTAAAGCCAGGGACTGCTCCATACCCCATGATGGAGCACACGGTGTAGGGAAGCCAGAAAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000397368.2
CDS CAA 72 bp ATGTTCTTGGGGTCTCGGTTCACCAGGTCAATCTCCTaGCAGTGGATATCCTTGACGATCTGGGCCTCGAGA +
Preference number: 6 (lower is better)
Translates to: MFLGSRFTRSIS*QWISLTIWASR
Trigger: TCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAAGAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343849.3
ENST00000397368.2
ENST00000472766.1
CDS CAA 90 bp TCCTCGTTAATGTTCTTGGGGTCTCGGTTCACCAGGTCAATCTCCTaGCAGTGGATATCCTTGACGATCTGGGCCTCGAGATCTGTGTGC +
Preference number: 6 (lower is better)
Translates to: SSLMFLGSRFTRSIS*QWISLTIWASRSVC
Trigger: GCACACAGATCTCGAGGCCCAGATCGTCAAGGATATCCACTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAAGAACATTAACGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000343849.3
ENST00000397368.2
ENST00000472766.1
CDS GCA 72 bp GTTTGTAAGGTTTCAAGACCCTGGTGGTGCTCGTTCTaGATTCAGGGTTGTGCTTTTCCTGCCCTCCATGAC +
Preference number: 6 (lower is better)
Translates to: VCKVSRPWWCSF*IQGCAFPALHD
Trigger: GTCATGGAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CAA 72 bp GCATTCAGGGTTGTGCTTTTCCTGCCCTCCATGACCTaGCTTGCCTTTGAGATAGCAACTGCTCTTTTGGAA +
Preference number: 6 (lower is better)
Translates to: AFRVVLFLPSMT*LAFEIATALLE
Trigger: TTCCAAAAGAGCAGTTGCTATCTCAAAGGCAAGCAAGGTCATGGAGGGCAGGAAAAGCACAACCCTGAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CAA 90 bp GCTCGTTCTGCATTCAGGGTTGTGCTTTTCCTGCCCTCCATGACCTaGCTTGCCTTTGAGATAGCAACTGCTCTTTTGGAATTCATCAAC +
Preference number: 6 (lower is better)
Translates to: ARSAFRVVLFLPSMT*LAFEIATALLEFIN
Trigger: GTTGATGAATTCCAAAAGAGCAGTTGCTATCTCAAAGGCAAGCAAGGTCATGGAGGGCAGGAAAAGCACAACCCTGAATGCAGAACGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CAA 90 bp AAGCCTGTGTGGTCAATAAGGAAGCCCAGTGCAGGATTTATGAAGTaGTTTGTAAGGTTTCAAGACCCTGGTGGTGCTCGTTCTGCATTC +
Preference number: 6 (lower is better)
Translates to: KPVWSIRKPSAGFMK*FVRFQDPGGARSAF
Trigger: GAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAATCCTGCACTGGGCTTCCTTATTGACCACACAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS GCA 72 bp TATGAAGTTGTTTGTAAGGTTTCAAGACCCTGGTGGTaGTCGTTCTGCATTCAGGGTTGTGCTTTTCCTGCC +
Preference number: 6 (lower is better)
Translates to: YEVVCKVSRPWW*SFCIQGCAFPA
Trigger: GGCAGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CAA 72 bp TCAAAATCCACCTTGACTATGTCCTCGTTAATGTTCTaGGGGTCTCGGTTCACCAGGTCAATCTCCTTGCAG +
Preference number: 6 (lower is better)
Translates to: SKSTLTMSSLMF*GSRFTRSISLQ
Trigger: CTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAAGAACATTAACGAGGACATAGTCAAGGTGGATTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000343849.3
ENST00000397368.2
CDS CAA 72 bp TTTTCTCCAGTCTTGACTATGTCCTCGTTAATGTTCTaGGGGTCTCGGTTCACCAGGTCAATCTCCTTGCAG +
Preference number: 6 (lower is better)
Translates to: FSPVLTMSSLMF*GSRFTRSISLQ
Trigger: CTGCAAGGAGATTGACCTGGTGAACCGAGACCCCAAGAACATTAACGAGGACATAGTCAAGACTGGAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CCA 72 bp ATTTATGAAGTTGTTTGTAAGGTTTCAAGACCCTGGTaGTGCTCGTTCTGCATTCAGGGTTGTGCTTTTCCT +
Preference number: 6 (lower is better)
Translates to: IYEVVCKVSRPW*CSFCIQGCAFP
Trigger: AGGAAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472766.1
CDS CCA 72 bp AGGATTTATGAAGTTGTTTGTAAGGTTTCAAGACCCTaGTGGTGCTCGTTCTGCATTCAGGGTTGTGCTTTT +
Preference number: 6 (lower is better)
Translates to: RIYEVVCKVSRP*WCSFCIQGCAF
Trigger: AAAAGCACAACCCTGAATGCAGAACGAGCACCACCAGGGTCTTGAAACCTTACAAACAACTTCATAAATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000472766.1