RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CATSPER4 (Homo sapiens)

Ensembl gene IDs: ENSG00000188782

Ensembl transcript IDs: ENST00000338855.6, ENST00000456354.7, ENST00000518899.5

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCAGGTGCTaGCACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAG +
Preference number: 1 (lower is better)
Translates to: CSTGPGAHRHQTCRC*HLHSPWPLPRYKGE
Trigger: CTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGTGGCAGCACCTGCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR TCA 90 bp AGTCTCCAACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTaGCTCCTGCTCCTGGTTGAAGCGGATTGCGCGCACCTCCTCCAC +
Preference number: 1 (lower is better)
Translates to: SLQRPARRRAPVQHL*LLLLVEADCAHLLH
Trigger: GTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGTTGGAGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 90 bp CTGCTAGGGTTCCCACTCTCATCATCCAGCATCCTCCTCTCTCCTTaGTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCAGGTGC +
Preference number: 1 (lower is better)
Translates to: LLGFPLSSSSILLSP*STGPGAHRHQTCRC
Trigger: GCACCTGCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGATGCTGGATGATGAGAGTGGGAACCCTAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR GCA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCATCCTGGCCTCTCAGTGGCTGCTCTT +
Preference number: 1 (lower is better)
Translates to: SHTKDTGRRSGWVCV*RPLGSHPGLSVAAL
Trigger: AAGAGCAGCCACTGAGAGGCCAGGATGGGAGCCAAGGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 90 bp AACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTaGTCCTGGTTGAAGCGGATTGCGCGCACCTCCTCCACAATCATG +
Preference number: 1 (lower is better)
Translates to: NDPLVDERLFNTSDS*SWLKRIARTSSTIM
Trigger: CATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR CCA 90 bp CCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGCACCTCCTCCACAATCATGACTTGG +
Preference number: 1 (lower is better)
Translates to: PLVDERLFNTSDSCS*LKRIARTSSTIMTW
Trigger: CCAAGTCATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR TCA 90 bp ACTGAGCAAGTCTTGCTGTTGAGACATCTGGCGGATGTCCTTGGATaGCGTAGTCTCCAACGACCCGCTCGTCGACGAGCGCCTGTTCAA +
Preference number: 1 (lower is better)
Translates to: TEQVLLLRHLADVLG*RSLQRPARRRAPVQ
Trigger: TTGAACAGGCGCTCGTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTCTCAACAGCAAGACTTGCTCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 90 bp ATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTaGTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCAGCATC +
Preference number: 1 (lower is better)
Translates to: ILRSNPGCVGQHPLL*SSLLLGFPLSSSSI
Trigger: GATGCTGGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACAGCCCCTGGCCTCTaGCCAGGTATAAGGGAGAGG +
Preference number: 2 (lower is better)
Translates to: AGGQGSPSLGQILAALASTAPGL*PGIRER
Trigger: CCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGT...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp AGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCAGACCTGCAGGTGCTaGCACCTTCACAGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: SRGPGIPILRSNPGCVGQQTCRC*HLHSPW
Trigger: CCAGGGGCTGTGAAGGTGGCAGCACCTGCAGGTCTG...CTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR TCA 90 bp ACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGCCCTCCTCCACAATCATaGCTTGGGGGCAGCCCCAGT +
Preference number: 2 (lower is better)
Translates to: TFTAPGLCPGIRERMGSGPPPQS*LGGSPS
Trigger: ACTGGGGCTGCCCCCAAGTCATGATTGTGGAGGAGG...GCCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCAGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCAT +
Preference number: 2 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSGWVCV*RPLGSH
Trigger: ATGGGAGCCAAGGGGCCTGCACACACACACCCAGCC...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp ATGTCCTTGGATGACGTAGTCTCCAACGACCCGCTCGTCGACGAGCGCCTGTTCGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCAT +
Preference number: 2 (lower is better)
Translates to: MSLDDVVSNDPLVDERLFGWVCV*RPLGSH
Trigger: ATGGGAGCCAAGGGGCCTGCACACACACACCCAGCC...GAACAGGCGCTCGTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGATCCTCCTCTCTCCTTaGTCCACCGGACCTGGGGCT +
Preference number: 2 (lower is better)
Translates to: ARAGGQGSPSLGQILAALILLSP*STGPGA
Trigger: AGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTATCCTCCTCTCTCCTTaGTCCACCGGACCTGGGGCT +
Preference number: 2 (lower is better)
Translates to: LWARAGGQGSPSLGQILAILLSP*STGPGA
Trigger: AGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCCTGGTTGAAGCGGATTaGGCGCACCTCCTCCACAAT +
Preference number: 2 (lower is better)
Translates to: AGGQGSPSLGQILAALASLVEAD*AHLLHN
Trigger: ATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAG...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR CAA 90 bp CTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACCTCCTCCACAATCATGACTTGGGGG +
Preference number: 2 (lower is better)
Translates to: LVDERLFNTSDSCSW*KRIARTSSTIMTWG
Trigger: CCCCCAAGTCATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR TCA 90 bp TGCCAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGCGGATGTCCTTGGATaGCGTAGTCTCCAACGACCC +
Preference number: 2 (lower is better)
Translates to: CQATLRTQEDAAAGCVCAADVLG*RSLQRP
Trigger: GGGTCGTTGGAGACTACGTCATCCAAGGACATCCGC...TGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCCACAGGCACCAGACCTaGAGGTGCTGCCACCTTCAC +
Preference number: 2 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSHRHQT*RCCHLH
Trigger: GTGAAGGTGGCAGCACCTGCAGGTCTGGTGCCTGTG...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR CCA 90 bp GTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTGGGAAGACGCAGCGGCTaGGTGTGTGTGTGCAGGCCC +
Preference number: 2 (lower is better)
Translates to: VNTQMSGPTGLAFLFLVLGRRSG*VCVCRP
Trigger: GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCC...CAGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR CCA 90 bp TGCCAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCATCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGC +
Preference number: 2 (lower is better)
Translates to: CQATLRTQEDAAAGCVCASDSCS*LKRIAR
Trigger: GCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGA...TGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCAGGTCAAATCCTGGCTaGGTTGGCCAGCACCCCCTT +
Preference number: 2 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSRSNPG*VGQHPL
Trigger: AAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCT...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR GCA 90 bp CACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGAACACCTCTGACTCCTaGTCCTGGTTGAAGCGGATT +
Preference number: 2 (lower is better)
Translates to: HLHSPWPLPRYKGEDGLWNTSDS*SWLKRI
Trigger: AATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTT...CCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCCAGCACCCCCTTCTGTaGTCATCCTTGCTGCTAGGG +
Preference number: 2 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLAQHPLL*SSLLLG
Trigger: CCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR-3UTR TCA 90 bp AACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTACTCCTGCTCCTGGTTaGAGCGGATTGCGCGCACCT +
Preference number: 2 (lower is better)
Translates to: NTKLYCQHTDVWPHWPCLTPAPG*SGLRAP
Trigger: AGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGT...AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR GCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCAGCACCCCCTTCTGTaGTCATCCTTGCTGCTAGGG +
Preference number: 2 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFQHPLL*SSLLLG
Trigger: CCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR TCA 72 bp CGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTaGCTCCTGCTCCTGGTTGAAGCGGATTGCGCGCAC +
Preference number: 3 (lower is better)
Translates to: RPARRRAPVQHL*LLLLVEADCAH
Trigger: GTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 72 bp AAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCATCCTGGCCTCTCAGTG +
Preference number: 3 (lower is better)
Translates to: KDTGRRSGWVCV*RPLGSHPGLSV
Trigger: CACTGAGAGGCCAGGATGGGAGCCAAGGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 72 bp CTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTaGTCCTGGTTGAAGCGGATTGCGCGCACCTCCTCC +
Preference number: 3 (lower is better)
Translates to: LVDERLFNTSDS*SWLKRIARTSS
Trigger: GGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR CAA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTCTCCACAATCATGACTaGGGGGCAGCCCCAGTACCC +
Preference number: 3 (lower is better)
Translates to: LWARAGGQGSPSLGQILALHNHD*GAAPVP
Trigger: GGGTACTGGGGCTGCCCCCAAGTCATGATTGTGGAG...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR CAA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACC +
Preference number: 3 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSDSCSW*KRIART
Trigger: GGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTC...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR CCA 72 bp GACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGCACCTCCTCCACAATC +
Preference number: 3 (lower is better)
Translates to: DERLFNTSDSCS*LKRIARTSSTI
Trigger: GATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR TCA 72 bp GTCTTGCTGTTGAGACATCTGGCGGATGTCCTTGGATaGCGTAGTCTCCAACGACCCGCTCGTCGACGAGCG +
Preference number: 3 (lower is better)
Translates to: VLLLRHLADVLG*RSLQRPARRRA
Trigger: CGCTCGTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTCTCAACAGCAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR CAA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTATCTGGCGGATGTCCTaGGATGACGTAGTCTCCAAC +
Preference number: 3 (lower is better)
Translates to: SPSLGQILAALASTPFCAIWRMS*DDVVSN
Trigger: GTTGGAGACTACGTCATCCAAGGACATCCGCCAGAT...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR GCA 72 bp TCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTaGTCATCCTTGCTGCTAGGGTTCCCACTCTCATCA +
Preference number: 3 (lower is better)
Translates to: SNPGCVGQHPLL*SSLLLGFPLSS
Trigger: TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR TCA 72 bp TCCATGCTAACGAGCGCACTGAGCAAGTCTTGCTGTTaGGACATCTGGCGGATGTCCTTGGATGACGTAGTC +
Preference number: 3 (lower is better)
Translates to: SMLTSALSKSCC*DIWRMSLDDVV
Trigger: GACTACGTCATCCAAGGACATCCGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCGCTCGTTAGCATGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR CAA 90 bp AACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTCGCACTGAGCAAGTCTaGCTGTTGAGACATCTGGCG +
Preference number: 3 (lower is better)
Translates to: NTKLYCQHTDVWPHWPCLRTEQV*LLRHLA
Trigger: CGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCG...AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518899.5
3UTR-3UTR CAA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCAACACAAAACTTTATaGTCAACACACAGATGTCTG +
Preference number: 3 (lower is better)
Translates to: PAPPSVLILAARVPTLIIQHKTL*STHRCL
Trigger: CAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTG...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCCACAGGCACCAGACCTaGAGGTGCTGCCACCTTCAC +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCHRHQT*RCCHLH
Trigger: GTGAAGGTGGCAGCACCTGCAGGTCTGGTGCCTGTG...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCATCCTCCTCTCTCCTTaGTCCACCGGACCTGGGGCT +
Preference number: 4 (lower is better)
Translates to: AGGQGSPSLGQILAALASILLSP*STGPGA
Trigger: AGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCGAGCACTTGCTCCTCTaGCCGACCGTAGGACTCGTG +
Preference number: 4 (lower is better)
Translates to: AGGQGSPSLGQILAALASEHLLL*PTVGLV
Trigger: CACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTC...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCTGTGTGCAGGCCCCTTaGCTCCCATCCTGGCCTCTC +
Preference number: 4 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPCVQAP*LPSWPL
Trigger: GAGAGGCCAGGATGGGAGCCAAGGGGCCTGCACACA...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGGAAGACGCAGCGGCTaGGTGTGTGTGTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: LWARAGGQGSPSLGQILAGRRSG*VCVCRP
Trigger: GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCC...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CTGGTTGAAGCGGATTGCGCGCACCTCCTCCACAATCATGACTTGGGGGCAGCCGGAAGACGCAGCGGCTaGGTGTGTGTGTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: LVEADCAHLLHNHDLGAAGRRSG*VCVCRP
Trigger: GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCC...GGCTGCCCCCAAGTCATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCGTCACACGTGTTTTCTaGGAGGTTCGACAGGGGGCC +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCVTRVF*EVRQGA
Trigger: GGCCCCCTGTCGAACCTCTCAGAAAACACGTGTGAC...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCGCGGATGTCCTTGGATaGCGTAGTCTCCAACGACCC +
Preference number: 4 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPADVLG*RSLQRP
Trigger: GGGTCGTTGGAGACTACGTCATCCAAGGACATCCGC...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCACCGCCATGCACACATaGACCAGACGAAGCGCCCTG +
Preference number: 4 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPTAMHT*TRRSAL
Trigger: CAGGGCGCTTCGTCTGGTGCATGTGTGCATGGCGGT...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCAT +
Preference number: 4 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGGWVCV*RPLGSH
Trigger: ATGGGAGCCAAGGGGCCTGCACACACACACCCAGCC...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTCAGACCTGCAGGTGCTaGCACCTTCACAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: LWARAGGQGSPSLGQILAQTCRC*HLHSPW
Trigger: CCAGGGGCTGTGAAGGTGGCAGCACCTGCAGGTCTG...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGATCCTCCTCTCTCCTTaGTCCACCGGACCTGGGGCT +
Preference number: 4 (lower is better)
Translates to: SRGPGIPILRSNPGCVGQILLSP*STGPGA
Trigger: AGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT...CTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCGAGCACTTGCTCCTCTaGCCGACCGTAGGACTCGTG +
Preference number: 4 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPEHLLL*PTVGLV
Trigger: CACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTC...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCAAATCCTGGCTGCGTTaGCCAGCACCCCCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPKSWLR*PAPPSV
Trigger: CACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTT...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCATGTCAGGCACCGACTaGAGGATGACGCGGATGATC +
Preference number: 4 (lower is better)
Translates to: AGGQGSPSLGQILAALASMSGTD*RMTRMI
Trigger: GATCATCCGCGTCATCCTGCAGTCGGTGCCTGACAT...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CTGGTTGAAGCGGATTGCGCGCACCTCCTCCACAATCATGACTTGGGGGCAGCCCGGGCGACCACACAATaGACCAGTGGCAGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: LVEADCAHLLHNHDLGAARATTQ*TSGSWS
Trigger: TGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCG...GGCTGCCCCCAAGTCATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGACAGCCCCTGGCCTCTaGCCAGGTATAAGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: ARAGGQGSPSLGQILAALTAPGL*PGIRER
Trigger: CCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGT...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAGACCTGCAGGTGCTaGCACCTTCACAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: SPSLGQILAALASTPFCAQTCRC*HLHSPW
Trigger: CCAGGGGCTGTGAAGGTGGCAGCACCTGCAGGTCTG...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGAGGTCAAATCCTGGCTaGGTTGGCCAGCACCCCCTT +
Preference number: 4 (lower is better)
Translates to: SRGPGIPILRSNPGCVGQRSNPG*VGQHPL
Trigger: AAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCT...CTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCTCGAGGCCTGTATaGGAGGTCCATTGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGPSRPV*EVHCCH
Trigger: GTGGCAGCAATGGACCTCCCATACAGGCCTCGAGGG...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp ACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTTCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGC +
Preference number: 4 (lower is better)
Translates to: TTRSSTSACSTPLTPAPGSDSCS*LKRIAR
Trigger: GCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGA...ACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCAACTCCTGCTCCTGGTTaGAGCGGATTGCGCGCACCT +
Preference number: 4 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSTPAPG*SGLRAP
Trigger: AGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGT...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGGATGTCCTTGGATaGCGTAGTCTCCAACGACCC +
Preference number: 4 (lower is better)
Translates to: LWARAGGQGSPSLGQILAADVLG*RSLQRP
Trigger: GGGTCGTTGGAGACTACGTCATCCAAGGACATCCGC...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCGTATGGGAGGTCCATTaGTGCCACCAGGCCTTTTCA +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCVWEVH*CHQAFS
Trigger: TGAAAAGGCCTGGTGGCAGCAATGGACCTCCCATAC...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCGTATGGGAGGTCCATTaGTGCCACCAGGCCTTTTCA +
Preference number: 4 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPVWEVH*CHQAFS
Trigger: TGAAAAGGCCTGGTGGCAGCAATGGACCTCCCATAC...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCAACCGCCATGCACACATaGACCAGACGAAGCGCCCTG +
Preference number: 4 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSTAMHT*TRRSAL
Trigger: CAGGGCGCTTCGTCTGGTGCATGTGTGCATGGCGGT...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCAGGGGCTCCACCGCCATaGACACATGCACCAGACGAA +
Preference number: 4 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSGAPPP*THAPDE
Trigger: TTCGTCTGGTGCATGTGTGCATGGCGGTGGAGCCCC...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAGGGGCTCCACCGCCATaGACACATGCACCAGACGAA +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSGAPPP*THAPDE
Trigger: TTCGTCTGGTGCATGTGTGCATGGCGGTGGAGCCCC...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCCCTGCCTTCATCATTTaGTCCAGGTTGGTGGTCACC +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCPAFII*SRLVVT
Trigger: GGTGACCACCAACCTGGAGCAAATGATGAAGGCAGG...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCCTCCTCCTCTTCCTCTaGGCCTGTCTCACTAAAGGT +
Preference number: 4 (lower is better)
Translates to: AGGQGSPSLGQILAALASLLLFL*ACLTKG
Trigger: ACCTTTAGTGAGACAGGCGCAGAGGAAGAGGAGGAG...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTCTGGTTGAAGCGGATTaGGCGCACCTCCTCCACAAT +
Preference number: 4 (lower is better)
Translates to: TTRSSTSACSTPLTPAPGLVEAD*AHLLHN
Trigger: ATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAG...ACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR GCA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCGGCTGGGTGTGTGTGTaGAGGCCCCTTGGCTCCCAT +
Preference number: 4 (lower is better)
Translates to: PAPPSVLILAARVPTLIIGWVCV*RPLGSH
Trigger: ATGGGAGCCAAGGGGCCTGCACACACACACCCAGCC...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR CAA 72 bp CAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTaGGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QGSPSLGQILAA*ASTPFCAHPCC
Trigger: GCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCTGGGAGGTCCATTGCTaGCACCAGGCCTTTTCATTA +
Preference number: 4 (lower is better)
Translates to: AGGQGSPSLGQILAALASWEVHC*HQAFSL
Trigger: TAATGAAAAGGCCTGGTGGCAGCAATGGACCTCCCA...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCTGGGAGGTCCATTGCTaGCACCAGGCCTTTTCATTA +
Preference number: 4 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPWEVHC*HQAFSL
Trigger: TAATGAAAAGGCCTGGTGGCAGCAATGGACCTCCCA...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCCTCAGTGCAGCTACTaGCCCTCCAAACCCCATACG +
Preference number: 4 (lower is better)
Translates to: SPSLGQILAALASTPFCAPQCSY*PSKPHT
Trigger: CGTATGGGGTTTGGAGGGGCAGTAGCTGCACTGAGG...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCCGTTGCTGTTGTCCCTaGTCTCCTGCCTTCATCATT +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCRCCCP*SPAFII
Trigger: AATGATGAAGGCAGGAGAGCAGGGACAACAGCAACG...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAGCACCCCCTTCTGTaGTCATCCTTGCTGCTAGGG +
Preference number: 4 (lower is better)
Translates to: SPSLGQILAALASTPFCAQHPLL*SSLLLG
Trigger: CCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCCCTCGAGGCCTGTATaGGAGGTCCATTGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: PAPPSVLILAARVPTLIIPSRPV*EVHCCH
Trigger: GTGGCAGCAATGGACCTCCCATACAGGCCTCGAGGG...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTTGCACCAGTGGCAGCTaGTCATTCTCCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: LWARAGGQGSPSLGQILACTSGS*SFSSSS
Trigger: GGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCA...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCGTTGCTGTTGTCCCTaGTCTCCTGCCTTCATCATT +
Preference number: 4 (lower is better)
Translates to: SRGPGIPILRSNPGCVGQRCCCP*SPAFII
Trigger: AATGATGAAGGCAGGAGAGCAGGGACAACAGCAACG...CTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCACTGGTTGAAGCGGATTaGGCGCACCTCCTCCACAAT +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSLVEAD*AHLLHN
Trigger: ATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAG...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGTGGCCCCACTGGCCTTaGCTTTCTCTTCTTGGTTCT +
Preference number: 4 (lower is better)
Translates to: ARAGGQGSPSLGQILAALWPHWP*LSLLGS
Trigger: AGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCA...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp ATCCTCCTCTCTCCTTGCTCCACCGGACCTGGGGCTCACAGGCACCAGACCTGCTTGTTCGTGATTTCCTaGCGGTTGATGAGCACTTGC +
Preference number: 4 (lower is better)
Translates to: ILLSPCSTGPGAHRHQTCLFVIS*RLMSTC
Trigger: GCAAGTGCTCATCAACCGCCAGGAAATCACGAACAA...GCAGGTCTGGTGCCTGTGAGCCCCAGGTCCGGTGGAGCAAGGAGAGAGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCCCCGCAAGGGGTTCCTaGAGGAGACCAGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSPARGS*RRPDFS
Trigger: GGAGAAATCTGGTCTCCTCCAGGAACCCCTTGCGGG...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCACAACACACAGATGTCTaGCCCCACTGGCCTTGCCTT +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSQHTDV*PHWPCL
Trigger: AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTG...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCACAACACACAGATGTCTaGCCCCACTGGCCTTGCCTT +
Preference number: 4 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSQHTDV*PHWPCL
Trigger: AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTG...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
3UTR CAA 72 bp GAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACCTCCTCCACAATCATG +
Preference number: 4 (lower is better)
Translates to: ERLFNTSDSCSW*KRIARTSSTIM
Trigger: CATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCACCCTCCCCTACATGTTaGGTTCATCTCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSPSPTC*VHLGSP
Trigger: AGGAGATCCGAGATGAACTCAACATGTAGGGGAGGG...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp AACGAGCGCACTGAGCAAGTCTTGCTGTTGAGACATCTGGCGGATGTCCTTGGACCTCCTCCACAATCATaGCTTGGGGGCAGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: NERTEQVLLLRHLADVLGPPPQS*LGGSPS
Trigger: ACTGGGGCTGCCCCCAAGTCATGATTGTGGAGGAGG...TCCAAGGACATCCGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCGCTCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR GCA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCATGTCAGGCACCGACTaGAGGATGACGCGGATGATC +
Preference number: 4 (lower is better)
Translates to: PAPPSVLILAARVPTLIIMSGTD*RMTRMI
Trigger: GATCATCCGCGTCATCCTGCAGTCGGTGCCTGACAT...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCATGCTTGGGCACGAATaGACCAAAGAGTGTTACTCC +
Preference number: 4 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPMLGHE*TKECYS
Trigger: GGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCAT...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR GCA 90 bp GGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCACCCCCAATCTCCATTaGATATTCCCTCTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: GQGSPSLGQILAALASTPTPNLH*IFPLLC
Trigger: ACAGAGAAGAGGGAATATGCAATGGAGATTGGGGGT...GGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGCCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATT +
Preference number: 4 (lower is better)
Translates to: TFTAPGLCPGIRERMGSGRISLY*LRFSCI
Trigger: AATACAGGAGAACCTGAGGCAGTACAAGGAGATCCG...GCCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp GTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTGACAGCCCCTGGCCTCTaGCCAGGTATAAGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: VNTQMSGPTGLAFLFLVLTAPGL*PGIRER
Trigger: CCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGT...CAGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGCCTCCACAATCATGTTaGGTTCATCTCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: ARAGGQGSPSLGQILAALPPQSC*VHLGSP
Trigger: AGGAGATCCGAGATGAACTCAACATGATTGTGGAGG...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR TCA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCAGCAAGTCTTGCTGTTaGGACATCTGGCGGATGTCC +
Preference number: 4 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSSKSCC*DIWRMS
Trigger: GGACATCCGCCAGATGTCTCAACAGCAAGACTTGCT...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTCAGGTTCTCCTGTATTaGCTCAAGCACCAAGCAAAA +
Preference number: 4 (lower is better)
Translates to: TTRSSTSACSTPLTPAPGQVLLY*LKHQAK
Trigger: TTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTG...ACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR GCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAAACACCTCTGACTCCTaGTCCTGGTTGAAGCGGATT +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSNTSDS*SWLKRI
Trigger: AATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTT...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCGCAACCTGTATGTTCTaGAAATGCAGCATGAAGAAG +
Preference number: 4 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPATCMF*KCSMKK
Trigger: CTTCTTCATGCTGCATTTCCAGAACATACAGGTTGC...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTTGCTTGATGTACATGTaGGTGATGAACTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: LWARAGGQGSPSLGQILACLMYM*VMNSCM
Trigger: CATGCAGGAGTTCATCACTCACATGTACATCAAGCA...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCACTCCTGCTCCTGGTTaGAGCGGATTGCGCGCACCT +
Preference number: 4 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLATPAPG*SGLRAP
Trigger: AGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGT...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ATGTCCTTGGATGACGTAGTCTCCAACGACCCGCTCGTCGACGAGCGCCTGTTCACCCCCAATCTCCATTaGATATTCCCTCTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: MSLDDVVSNDPLVDERLFTPNLH*IFPLLC
Trigger: ACAGAGAAGAGGGAATATGCAATGGAGATTGGGGGT...GAACAGGCGCTCGTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR GCA 90 bp GTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTGTGGCCCCACTGGCCTTaGCTTTCTCTTCTTGGTTCT +
Preference number: 4 (lower is better)
Translates to: VNTQMSGPTGLAFLFLVLWPHWP*LSLLGS
Trigger: AGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCA...CAGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp TGCCAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCATGTTCTGGAAATGCTTaGGCACGAATGCACCAAAGA +
Preference number: 4 (lower is better)
Translates to: CQATLRTQEDAAAGCVCACSGNA*ARMHQR
Trigger: TCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACA...TGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR CCA 90 bp CCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTCAGCAACCTGTATGTTCTaGAAATGCTTGGGCACGAAT +
Preference number: 4 (lower is better)
Translates to: PILRSNPGCVGQHPLLCSATCMF*KCLGTN
Trigger: ATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGC...TGAGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR CCA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCCCCGCAAGGGGTTCCTaGAGGAGACCAGATTTCTCC +
Preference number: 4 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLAPARGS*RRPDFS
Trigger: GGAGAAATCTGGTCTCCTCCAGGAACCCCTTGCGGG...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp AACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTGTGTGCAGGCCCCTTaGCTCCCATCCTGGCCTCTC +
Preference number: 4 (lower is better)
Translates to: NTKLYCQHTDVWPHWPCLCVQAP*LPSWPL
Trigger: GAGAGGCCAGGATGGGAGCCAAGGGGCCTGCACACA...AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp TTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTCCACAATCATGACTTaGGGGCAGCCCCAGTACCCT +
Preference number: 4 (lower is better)
Translates to: LSTHRCLAPLALPFSSWFSTIMT*GQPQYP
Trigger: AGGGTACTGGGGCTGCCCCCAAGTCATGATTGTGGA...GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR TCA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCTGCTTGATGTACATGTaGGTGATGAACTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: PAPPSVLILAARVPTLIICLMYM*VMNSCM
Trigger: CATGCAGGAGTTCATCACTCACATGTACATCAAGCA...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCTGTATGTTCTGGAAATaGTTGGGCACGAATGCACCA +
Preference number: 4 (lower is better)
Translates to: PAPPSVLILAARVPTLIICMFWK*LGTNAP
Trigger: TGGTGCATTCGTGCCCAAGCATTTCCAGAACATACA...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR GCA 90 bp AAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTCGGGCGACCACACAATaGACCAGTGGCAGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: KTLLSTHRCLAPLALPFSRATTQ*TSGSWS
Trigger: TGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCG...AGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCCAGGTTCTCCTGTATTaGCTCAAGCACCAAGCAAAA +
Preference number: 4 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSQVLLY*LKHQAK
Trigger: TTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTG...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp AAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGC +
Preference number: 4 (lower is better)
Translates to: KTLLSTHRCLAPLALPFSSDSCS*LKRIAR
Trigger: GCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGA...AGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTAAATCCTGGCTGCGTTaGCCAGCACCCCCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFKSWLR*PAPPSV
Trigger: CACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTT...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCAAATCCAGAAGCCATTaGGCCAGCCAAGGAGAACCT +
Preference number: 4 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLAKSRSH*ASQGEP
Trigger: AGGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTT...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCAACACCTCTGACTCCTaGTCCTGGTTGAAGCGGATT +
Preference number: 4 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLANTSDS*SWLKRI
Trigger: AATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTT...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTTGCACCAGTGGCAGCTaGTCATTCTCCTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFCTSGS*SFSSSS
Trigger: GGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCA...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp AAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTAGCAAGTCTTGCTGTTaGGACATCTGGCGGATGTCC +
Preference number: 4 (lower is better)
Translates to: KTLLSTHRCLAPLALPFSSKSCC*DIWRMS
Trigger: GGACATCCGCCAGATGTCTCAACAGCAAGACTTGCT...AGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCCTGCCTTCATCATTTaGTCCAGGTTGGTGGTCACC +
Preference number: 4 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFPAFII*SRLVVT
Trigger: GGTGACCACCAACCTGGAGCAAATGATGAAGGCAGG...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTCTCCTCCTCTTCCTCTaGGCCTGTCTCACTAAAGGT +
Preference number: 4 (lower is better)
Translates to: NTKLYCQHTDVWPHWPCLLLLFL*ACLTKG
Trigger: ACCTTTAGTGAGACAGGCGCAGAGGAAGAGGAGGAG...AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR TCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTAAATCCAGAAGCCATTaGGCCAGCCAAGGAGAACCT +
Preference number: 4 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFKSRSH*ASQGEP
Trigger: AGGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTT...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp AACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATT +
Preference number: 4 (lower is better)
Translates to: NTKLYCQHTDVWPHWPCLRISLY*LRFSCI
Trigger: AATACAGGAGAACCTGAGGCAGTACAAGGAGATCCG...AAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR GCA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTTGTATGTTCTGGAAATaGAGCATGAAGAAGAGGATG +
Preference number: 4 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFCMFWK*SMKKRM
Trigger: CATCCTCTTCTTCATGCTGCATTTCCAGAACATACA...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACC +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPDSCSW*KRIART
Trigger: GGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTC...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGCGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACC +
Preference number: 5 (lower is better)
Translates to: TFTAPGLCPGIRERMGSGDSCSW*KRIART
Trigger: GGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTC...GCCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCGCGGTTGATGAGCACTaGCTCCTCTGGCCGACCGTA +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPAVDEH*LLWPTV
Trigger: TACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGC...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGCTCCCAGGCGTCCGCTTaGTTCGTGATTTCCTGGCGG +
Preference number: 5 (lower is better)
Translates to: TFTAPGLCPGIRERMGSGSQASA*FVISWR
Trigger: CCGCCAGGAAATCACGAACAAAGCGGACGCCTGGGA...GCCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGTCCCAGGCGTCCGCTTaGTTCGTGATTTCCTGGCGG +
Preference number: 5 (lower is better)
Translates to: ARAGGQGSPSLGQILAALSQASA*FVISWR
Trigger: CCGCCAGGAAATCACGAACAAAGCGGACGCCTGGGA...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp AAGAAGAGGATGAGGACCATGATATTGGCCATGTCAGGCACCGACTaGAGGATGACGCGGATGATCCGGGCGAGGGGCTCCACCGCCATG +
Preference number: 5 (lower is better)
Translates to: KKRMRTMILAMSGTD*RMTRMIRARGSTAM
Trigger: CATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCGGTGCCTGACATGGCCAATATCATGGTCCTCATCCTCTTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp GGTTCCTGGAGGAGACCAGATTTCTCCGAGCGGGCGACCACACAATaGACCAGTGGCAGCTGGTCATTCTCCTCCTCTTCCTCTGCGCCT +
Preference number: 5 (lower is better)
Translates to: GSWRRPDFSERATTQ*TSGSWSFSSSSSAP
Trigger: AGGCGCAGAGGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCGCTCGGAGAAATCTGGTCTCCTCCAGGAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGTGTATGGGAGGTCCATaGCTGCCACCAGGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: HLHSPWPLPRYKGEDGLWCMGGP*LPPGLF
Trigger: GAAAAGGCCTGGTGGCAGCAATGGACCTCCCATACA...CCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GACATCTGGCGGATGTCCTTGGATGACGTAGTCTCCAACGACCCGCTCGTCGACGCGGTTGATGAGCACTaGCTCCTCTGGCCGACCGTA +
Preference number: 5 (lower is better)
Translates to: DIWRMSLDDVVSNDPLVDAVDEH*LLWPTV
Trigger: TACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGC...GTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp GCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCGTGATTTCCTGGCGGTaGATGAGCACTTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: AGGQGSPSLGQILAALASVISWR*MSTCSS
Trigger: AGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCAC...GCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCTTCTGTGCTCATCCTaGCTGCTAGGGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPLLCSS*LLGFPL
Trigger: GAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAG...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGCTTCTGTGCTCATCCTaGCTGCTAGGGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: HLHSPWPLPRYKGEDGLWLLCSS*LLGFPL
Trigger: GAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAG...CCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCTTGCCTTTCTCTTCTaGGTTCTGGGGCCCACTGAG +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPLAFLF*VLGPTE
Trigger: CTCAGTGGGCCCCAGAACCAAGAAGAGAAAGGCAAG...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS CCA 90 bp CCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTaGTTGAAGCGGATTGCGCGCACCTCCTCCACAATCATGTTGAGT +
Preference number: 5 (lower is better)
Translates to: PLVDERLFNTSDSCS*LKRIARTSSTIMLS
Trigger: ACTCAACATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS-3UTR CAA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCAAAATCCAGAAGCCATaGAGCCAGCCAAGGAGAACC +
Preference number: 5 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPKIQKP*SQPRRT
Trigger: GGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTTT...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTACGATGACGAACAGGTaGATGCCAATGAAGGCACCG +
Preference number: 5 (lower is better)
Translates to: TTRSSTSACSTPLTPAPGTMTNR*MPMKAP
Trigger: CGGTGCCTTCATTGGCATCAACCTGTTCGTCATCGT...ACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCATCATTTGCTCCAGGTaGGTGGTCACCACGATGACG +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPIICSR*VVTTMT
Trigger: CGTCATCGTGGTGACCACCAACCTGGAGCAAATGAT...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACGACCCGCTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTGGTTATTCGTTGCTGTaGTCCCTGCTCTCCTGCCTT +
Preference number: 5 (lower is better)
Translates to: TTRSSTSACSTPLTPAPGGYSLL*SLLSCL
Trigger: AAGGCAGGAGAGCAGGGACAACAGCAACGAATAACC...ACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAGCGGGTCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp CACCTTCACAGCCCCTGGCCTCTGCCCAGGTATAAGGGAGAGGATGGGCTCTGGTCATCTCGGATCTCCTaGTACTGCCTCAGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: HLHSPWPLPRYKGEDGLWSSRIS*YCLRFS
Trigger: GGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGA...CCAGAGCCCATCCTCTCCCTTATACCTGGGCAGAGGCCAGGGGCTGTGAAGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS CCA 90 bp CGCTTTGTTCGTGATTTCCTGGCGGTTGATGAGCACTTGCTCCTCTaGCCGACCGTAGGACTCGTGAATGGTACTCTGCAGGGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: RFVRDFLAVDEHLLL*PTVGLVNGTLQGRG
Trigger: CCCTCTCCCCTGCAGAGTACCATTCACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACGAACAAAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCATGAGGACCATGATATaGGCCATGTCAGGCACCGAC +
Preference number: 5 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGMRTMI*AMSGTD
Trigger: GTCGGTGCCTGACATGGCCAATATCATGGTCCTCAT...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCACGATGACGAACAGGTaGATGCCAATGAAGGCACCG +
Preference number: 5 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGTMTNR*MPMKAP
Trigger: CGGTGCCTTCATTGGCATCAACCTGTTCGTCATCGT...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCGAGCAAGTCTTGCTGTaGAGACATCTGGCGGATGTC +
Preference number: 5 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGEQVLL*RHLADV
Trigger: GACATCCGCCAGATGTCTCAACAGCAAGACTTGCTC...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GACATCTGGCGGATGTCCTTGGATGACGTAGTCTCCAACGACCCGCTCGTCGACCGCACTGAGCAAGTCTaGCTGTTGAGACATCTGGCG +
Preference number: 5 (lower is better)
Translates to: DIWRMSLDDVVSNDPLVDRTEQV*LLRHLA
Trigger: CGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCG...GTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCTGGCCCCACTGGCCTaGCCTTTCTCTTCTTGGTTC +
Preference number: 5 (lower is better)
Translates to: PAPPSVLILAARVPTLIILAPLA*PFSSWF
Trigger: GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAG...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCTGTATGGGAGGTCCATaGCTGCCACCAGGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: PAPPSVLILAARVPTLIICMGGP*LPPGLF
Trigger: GAAAAGGCCTGGTGGCAGCAATGGACCTCCCATACA...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGAAGACGATAATGAAGTaGAGGATGTTCCAGCCGTCC +
Preference number: 5 (lower is better)
Translates to: SRGPGIPILRSNPGCVGQKTIMK*RMFQPS
Trigger: GGACGGCTGGAACATCCTCAACTTCATTATCGTCTT...CTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GGCCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCAATCATTTGCTCCAGGTaGGTGGTCACCACGATGACG +
Preference number: 5 (lower is better)
Translates to: GQHPLLCSSLLLGFPLSSIICSR*VVTTMT
Trigger: CGTCATCGTGGTGACCACCAACCTGGAGCAAATGAT...TGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTTCCTGCCTTCATCATTaGCTCCAGGTTGGTGGTCAC +
Preference number: 5 (lower is better)
Translates to: SPSLGQILAALASTPFCASCLHH*LQVGGH
Trigger: GTGACCACCAACCTGGAGCAAATGATGAAGGCAGGA...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TGCCAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCATCCTGCCTTCATCATTaGCTCCAGGTTGGTGGTCAC +
Preference number: 5 (lower is better)
Translates to: CQATLRTQEDAAAGCVCASCLHH*LQVGGH
Trigger: GTGACCACCAACCTGGAGCAAATGATGAAGGCAGGA...TGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TGCCAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGTTATTCGTTGCTGTaGTCCCTGCTCTCCTGCCTT +
Preference number: 5 (lower is better)
Translates to: CQATLRTQEDAAAGCVCAGYSLL*SLLSCL
Trigger: AAGGCAGGAGAGCAGGGACAACAGCAACGAATAACC...TGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCAGCACCAAGCAAAAGTaGTCACACGTGTTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPSTKQK*SHVFSE
Trigger: CTCAGAAAACACGTGTGACAACTTTTGCTTGGTGCT...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGGCCAGCACCCCCTTCTGTGCTACCCTCCCCTACATGTaGAGTTCATCTCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: SPSLGQILAALASTPFCATLPYM*SSSRIS
Trigger: GGAGATCCGAGATGAACTCAACATGTAGGGGAGGGT...AGCACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTGACCTAAGGATGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp AACGAGCGCACTGAGCAAGTCTTGCTGTTGAGACATCTGGCGGATGTCCTTGGACTCCACAATCATGACTaGGGGGCAGCCCCAGTACCC +
Preference number: 5 (lower is better)
Translates to: NERTEQVLLLRHLADVLGLHNHD*GAAPVP
Trigger: GGGTACTGGGGCTGCCCCCAAGTCATGATTGTGGAG...TCCAAGGACATCCGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCGCTCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp GACATCTGGCGGATGTCCTTGGATGACGTAGTCTCCAACGACCCGCTCGTCGACAAAATCCAGAAGCCATaGAGCCAGCCAAGGAGAACC +
Preference number: 5 (lower is better)
Translates to: DIWRMSLDDVVSNDPLVDKIQKP*SQPRRT
Trigger: GGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTTT...GTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS-3UTR CAA 90 bp CTCTGGGCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTAAGACGATAATGAAGTaGAGGATGTTCCAGCCGTCC +
Preference number: 5 (lower is better)
Translates to: LWARAGGQGSPSLGQILAKTIMK*RMFQPS
Trigger: GGACGGCTGGAACATCCTCAACTTCATTATCGTCTT...AGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGCCCAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GCAAGAGCAGGGGGCCAGGGATCCCCATCCTTAGGTCAAATCCTGGCTGCGTTGACTAAAGGTTATTCGTaGCTGTTGTCCCTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: ARAGGQGSPSLGQILAALTKGYS*LLSLLS
Trigger: GGAGAGCAGGGACAACAGCAACGAATAACCTTTAGT...CAACGCAGCCAGGATTTGACCTAAGGATGGGGATCCCTGGCCCCCTGCTCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp AGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCAGCACCAAGCAAAAGTaGTCACACGTGTTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: SHTKDTGRRSGWVCVCRPSTKQK*SHVFSE
Trigger: CTCAGAAAACACGTGTGACAACTTTTGCTTGGTGCT...GGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CAAGCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCTCAGGTTCTCCTGTATaGCCTCAAGCACCAAGCAAA +
Preference number: 5 (lower is better)
Translates to: QATLRTQEDAAAGCVCAGSGSPV*PQAPSK
Trigger: TTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGA...GCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCCAAATCCTGGCTGCGTaGGCCAGCACCCCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLAQILAA*ASTPFC
Trigger: ACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTG...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CCAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCATGTTCTGGAAATGCTaGGGCACGAATGCACCAAAG +
Preference number: 5 (lower is better)
Translates to: PAPPSVLILAARVPTLIIMFWKC*GTNAPK
Trigger: CTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACAT...GATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR CAA 90 bp CAGCACCCCCTTCTGTGCTCATCCTTGCTGCTAGGGTTCCCACTCTCATCATCCACTAAAGGTTATTCGTaGCTGTTGTCCCTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: QHPLLCSSLLLGFPLSSSTKGYS*LLSLLS
Trigger: GGAGAGCAGGGACAACAGCAACGAATAACCTTTAGT...GGATGATGAGAGTGGGAACCCTAGCAGCAAGGATGAGCACAGAAGGGGGTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCCGCACTGAGCAAGTCTaGCTGTTGAGACATCTGGCG +
Preference number: 5 (lower is better)
Translates to: LSTHRCLAPLALPFSSWFRTEQV*LLRHLA
Trigger: CGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCG...GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp GCCACACTAAGGACACAGGAAGACGCAGCGGCTGGGTGTGTGTGTGCAGGCCCCCAACACAAAACTTTATaGTCAACACACAGATGTCTG +
Preference number: 5 (lower is better)
Translates to: ATLRTQEDAAAGCVCAGPQHKTL*STHRCL
Trigger: CAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTG...GGGGCCTGCACACACACACCCAGCCGCTGCGTCTTCCTGTGTCCTTAGTGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS TCA 90 bp CACACCTTTTCCATGCTAACGAGCGCACTGAGCAAGTCTTGCTGTTaGGACATCTGGCGGATGTCCTTGGATGACGTAGTCTCCAACGAC +
Preference number: 5 (lower is better)
Translates to: HTFSMLTSALSKSCC*DIWRMSLDDVVSND
Trigger: GTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTCTCAACAGCAAGACTTGCTCAGTGCGCTCGTTAGCATGGAAAAGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338855.6
CDS-3UTR CAA 90 bp TTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCGAGCAAGTCTTGCTGTaGAGACATCTGGCGGATGTC +
Preference number: 5 (lower is better)
Translates to: LSTHRCLAPLALPFSSWFEQVLL*RHLADV
Trigger: GACATCCGCCAGATGTCTCAACAGCAAGACTTGCTC...GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCAAATCCTGGCTGCGTaGGCCAGCACCCCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFQILAA*ASTPFC
Trigger: ACAGAAGGGGGTGCTGGCCAACGCAGCCAGGATTTG...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp AAGGTTATTCGTTGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTTaGTCCAGGTTGGTGGTCACCACGATGACGAACAGGTTGATGCCA +
Preference number: 5 (lower is better)
Translates to: KVIRCCCPCSPAFII*SRLVVTTMTNRLMP
Trigger: TGGCATCAACCTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp GCCTGTCTCACTAAAGGTTATTCGTTGCTGTTGTCCCTGCTCTCCTaGCTTCATCATTTGCTCCAGGTTGGTGGTCACCACGATGACGAA +
Preference number: 5 (lower is better)
Translates to: ACLTKGYSLLLSLLS*LHHLLQVGGHHDDE
Trigger: TTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGTGAGACAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTGGCCCCACTGGCCTaGCCTTTCTCTTCTTGGTTC +
Preference number: 5 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFLAPLA*PFSSWF
Trigger: GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAG...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp TTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTCAGGTTCTCCTGTATaGCCTCAAGCACCAAGCAAA +
Preference number: 5 (lower is better)
Translates to: LSTHRCLAPLALPFSSWFSGSPV*PQAPSK
Trigger: TTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGA...GAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTTGCCTTTCTCTTCTaGGTTCTGGGGCCCACTGAG +
Preference number: 5 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFLAFLF*VLGPTE
Trigger: CTCAGTGGGCCCCAGAACCAAGAAGAGAAAGGCAAG...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp AGTACCCTCCCCTACATGTTGAGTTCATCTCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATTGCCTCAAGCACCAAGCAAAAGTTG +
Preference number: 5 (lower is better)
Translates to: STLPYMLSSSRISLY*LRFSCIASSTKQKL
Trigger: CAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGTAGGGGAGGGTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS CCA 90 bp TGGGTGATGCAGATGAAGAGGGTGTACAGCGCAACCTGTATGTTCTaGAAATGCTTGGGCACGAATGCACCAAAGAGTGTTACTCCAAAC +
Preference number: 5 (lower is better)
Translates to: WVMQMKRVYSATCMF*KCLGTNAPKSVTPN
Trigger: GTTTGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGCATCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS-3UTR CAA 90 bp AAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTATGAGGACCATGATATaGGCCATGTCAGGCACCGAC +
Preference number: 5 (lower is better)
Translates to: KTLLSTHRCLAPLALPFSMRTMI*AMSGTD
Trigger: GTCGGTGCCTGACATGGCCAATATCATGGTCCTCAT...AGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp ACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTTCATCTCGGATCTCCTaGTACTGCCTCAGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: TQNFIVNTQMSGPTGLAFSSRIS*YCLRFS
Trigger: GGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGA...AAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS-3UTR CAA 90 bp CCAACACAAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTCCTCCACAATCATGTaGAGTTCATCTCGGATCTCC +
Preference number: 5 (lower is better)
Translates to: PTQNFIVNTQMSGPTGLASSTIM*SSSRIS
Trigger: GGAGATCCGAGATGAACTCAACATGATTGTGGAGGA...GGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000456354.7
CDS-3UTR CAA 90 bp AAAACTTTATTGTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTATCTGGCGGATGTCCTaGGATGACGTAGTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: KTLLSTHRCLAPLALPFSIWRMS*DDVVSN
Trigger: GTTGGAGACTACGTCATCCAAGGACATCCGCCAGAT...AGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGACAATAAAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS GCA 90 bp ACCTCCTCCACAATCATGTTGAGTTCATCTCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATTGCCTCAAGCACCAAGCAAAAGTTG +
Preference number: 5 (lower is better)
Translates to: TSSTIMLSSSRISLY*LRFSCIASSTKQKL
Trigger: CAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGATTGTGGAGGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS-3UTR CAA 90 bp GTCAACACACAGATGTCTGGCCCCACTGGCCTTGCCTTTCTCTTCTTGGTTCTGCAACACAAAACTTTATaGTCAACACACAGATGTCTG +
Preference number: 5 (lower is better)
Translates to: VNTQMSGPTGLAFLFLVLQHKTL*STHRCL
Trigger: CAGACATCTGTGTGTTGACAATAAAGTTTTGTGTTG...CAGAACCAAGAAGAGAAAGGCAAGGCCAGTGGGGCCAGACATCTGTGTGTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000456354.7
ENST00000518899.5
CDS CCA 72 bp GAGAGGTTCGACAGGGGGCCTCCCGCAAGGGGTTCCTaGAGGAGACCAGATTTCTCCGAGCGGGCGACCACA +
Preference number: 6 (lower is better)
Translates to: ERFDRGPPARGS*RRPDFSERATT
Trigger: TGTGGTCGCCCGCTCGGAGAAATCTGGTCTCCTCCAGGAACCCCTTGCGGGAGGCCCCCTGTCGAACCTCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp ATGAGGACCATGATATTGGCCATGTCAGGCACCGACTaGAGGATGACGCGGATGATCCGGGCGAGGGGCTCC +
Preference number: 6 (lower is better)
Translates to: MRTMILAMSGTD*RMTRMIRARGS
Trigger: GGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCGGTGCCTGACATGGCCAATATCATGGTCCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CCA 72 bp TGCATGTCCCAGGCGTCCGCTTTGTTCGTGATTTCCTaGCGGTTGATGAGCACTTGCTCCTCTGGCCGACCG +
Preference number: 6 (lower is better)
Translates to: CMSQASALFVIS*RLMSTCSSGRP
Trigger: CGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACGAACAAAGCGGACGCCTGGGACATGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CCA 72 bp AGATTTCTCCGAGCGGGCGACCACACAATGCACCAGTaGCAGCTGGTCATTCTCCTCCTCTTCCTCTGCGCC +
Preference number: 6 (lower is better)
Translates to: RFLRAGDHTMHQ*QLVILLLFLCA
Trigger: GGCGCAGAGGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCGCTCGGAGAAATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 90 bp CCAGGCGTCCGCTTTGTTCGTGATTTCCTGGCGGTTGATGAGCACTaGCTCCTCTGGCCGACCGTAGGACTCGTGAATGGTACTCTGCAG +
Preference number: 6 (lower is better)
Translates to: PGVRFVRDFLAVDEH*LLWPTVGLVNGTLQ
Trigger: CTGCAGAGTACCATTCACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACGAACAAAGCGGACGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp AGGAGACCAGATTTCTCCGAGCGGGCGACCACACAATaGACCAGTGGCAGCTGGTCATTCTCCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: RRPDFSERATTQ*TSGSWSFSSSS
Trigger: GGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCGCTCGGAGAAATCTGGTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 90 bp CTCGTCGACGAGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTaGAAGCGGATTGCGCGCACCTCCTCCACAATCATGTTGAGTTCA +
Preference number: 6 (lower is better)
Translates to: LVDERLFNTSDSCSW*KRIARTSSTIMLSS
Trigger: TGAACTCAACATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCTCGTCGACGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS TCA 72 bp AGCGCCTGTTCAACACCTCTGACTCCTGCTCCTGGTTaGAGCGGATTGCGCGCACCTCCTCCACAATCATGT +
Preference number: 6 (lower is better)
Translates to: SACSTPLTPAPG*SGLRAPPPQSC
Trigger: ACATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAACAGGCGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS CCA 72 bp CGTGATTTCCTGGCGGTTGATGAGCACTTGCTCCTCTaGCCGACCGTAGGACTCGTGAATGGTACTCTGCAG +
Preference number: 6 (lower is better)
Translates to: RDFLAVDEHLLL*PTVGLVNGTLQ
Trigger: CTGCAGAGTACCATTCACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp CGTTGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTTaGTCCAGGTTGGTGGTCACCACGATGACGAACAGG +
Preference number: 6 (lower is better)
Translates to: RCCCPCSPAFII*SRLVVTTMTNR
Trigger: CCTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp CGCTTTGTTCGTGATTTCCTGGCGGTTGATGAGCACTaGCTCCTCTGGCCGACCGTAGGACTCGTGAATGGT +
Preference number: 6 (lower is better)
Translates to: RFVRDFLAVDEH*LLWPTVGLVNG
Trigger: ACCATTCACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACGAACAAAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp TGTCCCTGCTCTCCTGCCTTCATCATTTGCTCCAGGTaGGTGGTCACCACGATGACGAACAGGTTGATGCCA +
Preference number: 6 (lower is better)
Translates to: CPCSPAFIICSR*VVTTMTNRLMP
Trigger: TGGCATCAACCTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp TCGTTGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTaGCTCCAGGTTGGTGGTCACCACGATGACGAACAG +
Preference number: 6 (lower is better)
Translates to: SLLLSLLSCLHH*LQVGGHHDDEQ
Trigger: CTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 90 bp CGTTGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTTGCTCCAGGTaGGTGGTCACCACGATGACGAACAGGTTGATGCCAATGAAGGCA +
Preference number: 6 (lower is better)
Translates to: RCCCPCSPAFIICSR*VVTTMTNRLMPMKA
Trigger: TGCCTTCATTGGCATCAACCTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp AAATGCAGCATGAAGAAGAGGATGAGGACCATGATATaGGCCATGTCAGGCACCGACTGCAGGATGACGCGG +
Preference number: 6 (lower is better)
Translates to: KCSMKKRMRTMI*AMSGTDCRMTR
Trigger: CCGCGTCATCCTGCAGTCGGTGCCTGACATGGCCAATATCATGGTCCTCATCCTCTTCTTCATGCTGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS CAA 90 bp CTCCTCTTCCTCTGCGCCTGTCTCACTAAAGGTTATTCGTTGCTGTaGTCCCTGCTCTCCTGCCTTCATCATTTGCTCCAGGTTGGTGGT +
Preference number: 6 (lower is better)
Translates to: LLFLCACLTKGYSLL*SLLSCLHHLLQVGG
Trigger: ACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGTGAGACAGGCGCAGAGGAAGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 90 bp AAAGGTTATTCGTTGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTaGCTCCAGGTTGGTGGTCACCACGATGACGAACAGGTTGATGCC +
Preference number: 6 (lower is better)
Translates to: KGYSLLLSLLSCLHH*LQVGGHHDDEQVDA
Trigger: GGCATCAACCTGTTCGTCATCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS TCA 72 bp TGTTCCAGCCGTCCTTCCAGAAAATCCAGAAGCCATTaGGCCAGCCAAGGAGAACCTCACAAAGAAGGATGG +
Preference number: 6 (lower is better)
Translates to: CSSRPSRKSRSH*ASQGEPHKEGW
Trigger: CCATCCTTCTTTGTGAGGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTTTCTGGAAGGACGGCTGGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp CTCTGCGCCTGTCTCACTAAAGGTTATTCGTTGCTGTaGTCCCTGCTCTCCTGCCTTCATCATTTGCTCCAG +
Preference number: 6 (lower is better)
Translates to: LCACLTKGYSLL*SLLSCLHHLLQ
Trigger: CTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGTGAGACAGGCGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp ACTAAAGGTTATTCGTTGCTGTTGTCCCTGCTCTCCTaGCTTCATCATTTGCTCCAGGTTGGTGGTCACCAC +
Preference number: 6 (lower is better)
Translates to: TKGYSLLLSLLS*LHHLLQVGGHH
Trigger: GTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp TCTTCCTCTGCGCCTGTCTCACTAAAGGTTATTCGTTaGTGTTGTCCCTGCTCTCCTGCCTTCATCATTTGC +
Preference number: 6 (lower is better)
Translates to: SSSAPVSLKVIR*CCPCSPAFIIC
Trigger: GCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGTGAGACAGGCGCAGAGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp CCCTACATGTTGAGTTCATCTCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATTGCCTCAAGCACCAAG +
Preference number: 6 (lower is better)
Translates to: PYMLSSSRISLY*LRFSCIASSTK
Trigger: CTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGTAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518899.5
CDS CAA 72 bp ATGTTCCAGCCGTCCTTCCAGAAAATCCAGAAGCCATaGAGCCAGCCAAGGAGAACCTCACAAAGAAGGATG +
Preference number: 6 (lower is better)
Translates to: MFQPSFQKIQKP*SQPRRTSQRRM
Trigger: CATCCTTCTTTGTGAGGTTCTCCTTGGCTGGCTCAATGGCTTCTGGATTTTCTGGAAGGACGGCTGGAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp CTCTTCCTCTGCGCCTGTCTCACTAAAGGTTATTCGTaGCTGTTGTCCCTGCTCTCCTGCCTTCATCATTTG +
Preference number: 6 (lower is better)
Translates to: LFLCACLTKGYS*LLSLLSCLHHL
Trigger: CAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTTTAGTGAGACAGGCGCAGAGGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp AGGTTCTCCTGTATTGCCTCAAGCACCAAGCAAAAGTaGTCACACGTGTTTTCTGAGAGGTTCGACAGGGGG +
Preference number: 6 (lower is better)
Translates to: RFSCIASSTKQK*SHVFSERFDRG
Trigger: CCCCCTGTCGAACCTCTCAGAAAACACGTGTGACAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CAA 72 bp CTCGGATCTCCTTGTACTGCCTCAGGTTCTCCTGTATaGCCTCAAGCACCAAGCAAAAGTTGTCACACGTGT +
Preference number: 6 (lower is better)
Translates to: LGSPCTASGSPV*PQAPSKSCHTC
Trigger: ACACGTGTGACAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS GCA 72 bp AAGAGGGTGTACAGCGCAACCTGTATGTTCTGGAAATaGTTGGGCACGAATGCACCAAAGAGTGTTACTCCA +
Preference number: 6 (lower is better)
Translates to: KRVYSATCMFWK*LGTNAPKSVTP
Trigger: TGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS GCA 72 bp TCGGATCTCCTTGTACTGCCTCAGGTTCTCCTGTATTaGCTCAAGCACCAAGCAAAAGTTGTCACACGTGTT +
Preference number: 6 (lower is better)
Translates to: SDLLVLPQVLLY*LKHQAKVVTRV
Trigger: AACACGTGTGACAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5
CDS CCA 72 bp GGGTGTACAGCGCAACCTGTATGTTCTGGAAATGCTTaGGCACGAATGCACCAAAGAGTGTTACTCCAAACA +
Preference number: 6 (lower is better)
Translates to: GCTAQPVCSGNA*ARMHQRVLLQT
Trigger: TGTTTGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS CCA 72 bp CAGATGAAGAGGGTGTACAGCGCAACCTGTATGTTCTaGAAATGCTTGGGCACGAATGCACCAAAGAGTGTT +
Preference number: 6 (lower is better)
Translates to: QMKRVYSATCMF*KCLGTNAPKSV
Trigger: AACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS CAA 90 bp CAGATGAAGAGGGTGTACAGCGCAACCTGTATGTTCTGGAAATGCTaGGGCACGAATGCACCAAAGAGTGTTACTCCAAACACGGAAAAA +
Preference number: 6 (lower is better)
Translates to: QMKRVYSATCMFWKC*GTNAPKSVTPNTEK
Trigger: TTTTTCCGTGTTTGGAGTAACACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS GCA 72 bp ACAATCATGTTGAGTTCATCTCGGATCTCCTTGTACTaGCTCAGGTTCTCCTGTATTGCCTCAAGCACCAAG +
Preference number: 6 (lower is better)
Translates to: TIMLSSSRISLY*LRFSCIASSTK
Trigger: CTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGATTGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338855.6
ENST00000456354.7
CDS CAA 72 bp AAGAACCGCAAGAGCAAGATAAAGACGATAATGAAGTaGAGGATGTTCCAGCCGTCCTTCCAGAAAATCCAG +
Preference number: 6 (lower is better)
Translates to: KNRKSKIKTIMK*RMFQPSFQKIQ
Trigger: CTGGATTTTCTGGAAGGACGGCTGGAACATCCTCAACTTCATTATCGTCTTTATCTTGCTCTTGCGGTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338855.6
ENST00000456354.7
ENST00000518899.5