Pregenerated sensors for CATSPER2 (Homo sapiens)
Ensembl gene IDs: ENSG00000166762Ensembl transcript IDs: ENST00000396879.8, ENST00000469461.6, ENST00000472960.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACATTGCCCAGGCTGGAATaGAGTGATATGATCCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: RITRTRGGERRQENSRETLPRLE*SDMILA Trigger: AGCTAGGATCATATCACTGCATTCCAGCCTGGGCAA...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR CCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACACTTGGTATGTGCTCTTaGGCAAGCTACTTAACTTAC | + |
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Preference number: 2 (lower is better) Translates to: RITRTRGGERRQENSRETLGMCS*ASYLTY Trigger: GTAAGTTAAGTAGCTTGCCCAAGAGCACATACCAAG...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR TCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTTCAGGGTCACACTACTaGGCAGCTATCAGGAGTATT | + |
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Preference number: 2 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCSGSHY*AAIRSI Trigger: AATACTCCTGATAGCTGCTCAGTAGTGTGACCCTGA...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR TCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAAAGCTATACTACCTTTaGATTTTCCAGTCTCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: RITRTRGGERRQENSRETKLYYL*IFQSPV Trigger: TACTGGAGACTGGAAAATTCAAAGGTAGTATAGCTT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR TCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTGACTCCACTGGCATCTaGGCTAACTTGTTTTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCDSTGI*ANLFCS Trigger: AGAACAAAACAAGTTAGCTCAGATGCCAGTGGAGTC...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR GCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTATGATTACAAGCATCTaGCACCACACCCAGCTAATT | + |
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Preference number: 2 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCMITSI*HHTQLI Trigger: AATTAGCTGGGTGTGGTGGCAGATGCTTGTAATCAT...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR CAA 90 bp | CTGGATAATCCTCCTTTCAGTGATGTTCTAAAAGGTGTTCCTGCTTaGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAA | + |
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Preference number: 2 (lower is better) Translates to: LDNPPFSDVLKGVPA*MGDRLTLKSLLTLK Trigger: TTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGCAGGAACACCTTTTAGAACATCACTGAAAGGAGGATTATCCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR CCA 72 bp | CTGAGAAAGGAGTCACCGGCTCTCTTCCCCTGCATATaGGGAAATAGGTATGCAAGCCTAGGCGCTTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: LRKESPALFPCI*GNRYASLGASE Trigger: TTCTGAAGCGCCTAGGCTTGCATACCTATTTCCCCATATGCAGGGGAAGAGAGCCGGTGACTCCTTTCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR CAA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAAGCTCTACCTCTTACTaGGTATGTGCTCTTGGGCAA | + |
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Preference number: 3 (lower is better) Translates to: RITRTRGGERRQENSRETSSTSY*VCALGQ Trigger: TTGCCCAAGAGCACATACCAAGTAAGAGGTAGAGCT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR-3UTR CAA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAAAAGGTGTTCCTGCTTaGATGGGAGATAGATTAACT | + |
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Preference number: 3 (lower is better) Translates to: RITRTRGGERRQENSRETKGVPA*MGDRLT Trigger: AGTTAATCTATCTCCCATCAAAGCAGGAACACCTTT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR GCA 72 bp | GATATGGAACATATCTATAGCACTCCAGATGCTTCATaGTTCCTCCCCATCAGTATCTTCACTCCAAGAATA | + |
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Preference number: 3 (lower is better) Translates to: DMEHIYSTPDAS*FLPISIFTPRI Trigger: TATTCTTGGAGTGAAGATACTGATGGGGAGGAAGCATGAAGCATCTGGAGTGCTATAGATATGTTCCATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR CCA 72 bp | GTATATACCGGTGTAACCACCATGCAGATCAAGATATaGAACATATCTATAGCACTCCAGATGCTTCATGCT | + |
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Preference number: 3 (lower is better) Translates to: VYTGVTTMQIKI*NISIALQMLHA Trigger: AGCATGAAGCATCTGGAGTGCTATAGATATGTTCCATATCTTGATCTGCATGGTGGTTACACCGGTATATAC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR GCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACACCGGGCAGATTTTCGTaGACAAGAGTCTCCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETPGRFS*TRVSQS Trigger: GGACTGGGAGACTCTTGTGCACGAAAATCTGCCCGG...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTCAGGTGCCCCGAGCCTaGCTACCCCTATGCAAGACG | + |
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Preference number: 4 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCQVPRA*LPLCKT Trigger: CGTCTTGCATAGGGGTAGCCAGGCTCGGGGCACCTG...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR TCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAGTCTGGCTACCCAAGTaGAGCCAGTCTGAGAATAAC | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETVWLPK*SQSENN Trigger: GTTATTCTCAGACTGGCTTCACTTGGGTAGCCAGAC...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACACTCTTCCCCTGCATATaGGGAAATAGGTATGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETLFPCI*GNRYAS Trigger: GCTTGCATACCTATTTCCCCATATGCAGGGGAAGAG...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR TCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAGACTCCACTGGCATCTaGGCTAACTTGTTTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETDSTGI*ANLFCS Trigger: AGAACAAAACAAGTTAGCTCAGATGCCAGTGGAGTC...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR GCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAAAGTTCATCAGTGCCTaGACTGCAAACTCTTGTAAC | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETKFISA*TANSCN Trigger: GTTACAAGAGTTTGCAGTGCAGGCACTGATGAACTT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR GCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACACTCTTACTTGGTATGTaGTCTTGGGCAAGCTACTTA | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETLLLGM*SWASYL Trigger: TAAGTAGCTTGCCCAAGAGCACATACCAAGTAAGAG...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR GCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTCCGGCTCTCTTCCCCTaGATATGGGGAAATAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCPALFP*IWGNRY Trigger: ATACCTATTTCCCCATATGCAGGGGAAGAGAGCCGG...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CCA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAATGCAGATCAAGATATaGAACATATCTATAGCACTC | + |
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Preference number: 4 (lower is better) Translates to: RITRTRGGERRQENSRETMQIKI*NISIAL Trigger: GAGTGCTATAGATATGTTCCATATCTTGATCTGCAT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR GCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTAACTGTCCTCTATTTTaGTATGGCTTGACGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCNCPLF*YGLTSV Trigger: CACTGACGTCAAGCCATAGCAAAATAGAGGACAGTT...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTCTTGGTATGTGCTCTTaGGCAAGCTACTTAACTTAC | + |
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Preference number: 4 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCLGMCS*ASYLTY Trigger: GTAAGTTAAGTAGCTTGCCCAAGAGCACATACCAAG...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| 3UTR CAA 72 bp | AGAACCTTAGCTCTACCTCTTACTTGGTATGTGCTCTaGGGCAAGCTACTTAACTTACTTAATTTCTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: RTLALPLTWYVL*GKLLNLLNFFR Trigger: CCTAAAGAAATTAAGTAAGTTAAGTAGCTTGCCCAAGAGCACATACCAAGTAAGAGGTAGAGCTAAGGTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR TCA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTAAGCTATACTACCTTTaGATTTTCCAGTCTCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCKLYYL*IFQSPV Trigger: TACTGGAGACTGGAAAATTCAAAGGTAGTATAGCTT...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS GCA 90 bp | TGGCAGGGCCATATTCCCTCTGGAGGCTTTAGGGGAGAAGTTCCTTaGCTCTTCTACCTTCTGGCAGCTGCCTGGCATTCCTCAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: WQGHIPSGGFRGEVP*LFYLLAAAWHSSAS Trigger: GGAAGCTGAGGAATGCCAGGCAGCTGCCAGAAGGTAGAAGAGGCAAGGAACTTCTCCCCTAAAGCCTCCAGAGGGAATATGGCCCTGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 90 bp | CAGCACTCTTCCCCCTGCTCACTCTACTCCAGTCACAATGGCCTCTaGTGTTTCTCAAACAAACCAAGCATGCTTCCAGCTTCGGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: QHSSPCSLYSSHNGL*CFSNKPSMLPASEL Trigger: AAGCTCCGAAGCTGGAAGCATGCTTGGTTTGTTTGAGAAACAGCAGAGGCCATTGTGACTGGAGTAGAGTGAGCAGGGGGAAGAGTGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 90 bp | GGTCACCATTCTCTCTCTGACTTCATTTCCCAGCACTCTTCCCCCTaGTCACTCTACTCCAGTCACAATGGCCTCTGCTGTTTCTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: GHHSLSDFISQHSSP*SLYSSHNGLCCFSN Trigger: GTTTGAGAAACAGCAGAGGCCATTGTGACTGGAGTAGAGTGAGCAGGGGGAAGAGTGCTGGGAAATGAAGTCAGAGAGAGAATGGTGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS-3UTR CAA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAAGGAAGGTCATGCTCTaGAGGGCCCTGACCAGGACC | + |
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Preference number: 5 (lower is better) Translates to: RITRTRGGERRQENSRETRKVML*RALTRT Trigger: GGTCCTGGTCAGGGCCCTCAAGAGCATGACCTTCCT...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS GCA 90 bp | ACTCCAGTCACAATGGCCTCTGCTGTTTCTCAAACAAACCAAGCATaGTTCCAGCTTCGGAGCTTTGCACCGTTTCATCTGCCTATTAAC | + |
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Preference number: 5 (lower is better) Translates to: TPVTMASAVSQTNQA*FQLRSFAPFHLPIN Trigger: GTTAATAGGCAGATGAAACGGTGCAAAGCTCCGAAGCTGGAAGCATGCTTGGTTTGTTTGAGAAACAGCAGAGGCCATTGTGACTGGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 90 bp | CTTACAGATATCCACATGGTAATCCCCTTACCTCCTTCGAGTCTTTaGTCACATTACCTTTTCAATGAGGTCACCGTGACTACCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: LTDIHMVIPLPPSSL*SHYLFNEVTVTTLF Trigger: AAACAGGGTAGTCACGGTGACCTCATTGAAAAGGTAATGTGAGCAAAGACTCGAAGGAGGTAAGGGGATTACCATGTGGATATCTGTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 90 bp | TCCTTCTTAAACGTAAGTCACTTCATGTCACTCCTCTGTTCTGCTTaGCATTTCAAAGTCCCTACAATGGCACCCATAACCCTACAGGAT | + |
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Preference number: 5 (lower is better) Translates to: SFLNVSHFMSLLCSA*HFKVPTMAPITLQD Trigger: ATCCTGTAGGGTTATGGGTGCCATTGTAGGGACTTTGAAATGGCAAGCAGAACAGAGGAGTGACATGAAGTGACTTACGTTTAAGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS TCA 90 bp | AAAATGACAGAAATATATTCCGTCACAATTCTAGAGGCTAGAGTCTaGAATGAAGGTGTTGGCAGGGCCATATTCCCTCTGGAGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: KMTEIYSVTILEARV*NEGVGRAIFPLEAL Trigger: TAAAGCCTCCAGAGGGAATATGGCCCTGCCAACACCTTCATTTCAGACTCTAGCCTCTAGAATTGTGACGGAATATATTTCTGTCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS-3UTR CAA 90 bp | AGAATAACAAGAACACGTGGAGGAGAGCGCAGACAGGAAAATTCCAGAGAAACAGAAGCTATACTACCTTaGAATTTTCCAGTCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: RITRTRGGERRQENSRETEAILP*NFPVSS Trigger: ACTGGAGACTGGAAAATTCAAAGGTAGTATAGCTTC...TGTTTCTCTGGAATTTTCCTGTCTGCGCTCTCCTCCACGTGTTCTTGTTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTCTATTTTGCTATGGCTaGACGTCAGTGCTTCATGTG | + |
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Preference number: 5 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCLFCYG*TSVLHV Trigger: CACATGAAGCACTGACGTCAAGCCATAGCAAAATAG...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGATGGGAGATAGATTAACTCTGAAATCCCTTCTAACACTAAAAACCTGTAAAGGTGTTCCTGCTTaGATGGGAGATAGATTAACT | + |
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Preference number: 5 (lower is better) Translates to: ALMGDRLTLKSLLTLKTCKGVPA*MGDRLT Trigger: AGTTAATCTATCTCCCATCAAAGCAGGAACACCTTT...ACAGGTTTTTAGTGTTAGAAGGGATTTCAGAGTTAATCTATCTCCCATCAAAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000396879.8 |
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| CDS GCA 72 bp | TGGCAGCTGCCTGGCATTCCTCAGCTTCCCTTGGCTTaGGGTGGCATTAGCCCCAACCTCTATCTCCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: WQLPGIPQLPLA*GGISPNLYLRL Trigger: AAGACGGAGATAGAGGTTGGGGCTAATGCCACCGCAAGCCAAGGGAAGCTGAGGAATGCCAGGCAGCTGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 72 bp | GGGAGAAGTTCCTTGCCTCTTCTACCTTCTGGCAGCTaGCTGGCATTCCTCAGCTTCCCTTGGCTTGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: GRSSLPLLPSGS*LAFLSFPWLAV Trigger: CACCGCAAGCCAAGGGAAGCTGAGGAATGCCAGGCAGCTGCCAGAAGGTAGAAGAGGCAAGGAACTTCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS CCA 72 bp | GCTTTAGGGGAGAAGTTCCTTGCCTCTTCTACCTTCTaGCAGCTGCCTGGCATTCCTCAGCTTCCCTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ALGEKFLASSTF*QLPGIPQLPLA Trigger: AGCCAAGGGAAGCTGAGGAATGCCAGGCAGCTGCCAGAAGGTAGAAGAGGCAAGGAACTTCTCCCCTAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 72 bp | CATATTCCCTCTGGAGGCTTTAGGGGAGAAGTTCCTTaGCTCTTCTACCTTCTGGCAGCTGCCTGGCATTCC | + |
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Preference number: 6 (lower is better) Translates to: HIPSGGFRGEVP*LFYLLAAAWHS Trigger: GGAATGCCAGGCAGCTGCCAGAAGGTAGAAGAGGCAAGGAACTTCTCCCCTAAAGCCTCCAGAGGGAATATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 72 bp | TCTCTCTCTGACTTCATTTCCCAGCACTCTTCCCCCTaGTCACTCTACTCCAGTCACAATGGCCTCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SLSDFISQHSSP*SLYSSHNGLCC Trigger: ACAGCAGAGGCCATTGTGACTGGAGTAGAGTGAGCAGGGGGAAGAGTGCTGGGAAATGAAGTCAGAGAGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS CCA 72 bp | GCACTCTTCCCCCTGCTCACTCTACTCCAGTCACAATaGCCTCTGCTGTTTCTCAAACAAACCAAGCATGCT | + |
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Preference number: 6 (lower is better) Translates to: ALFPLLTLLQSQ*PLLFLKQTKHA Trigger: AGCATGCTTGGTTTGTTTGAGAAACAGCAGAGGCCATTGTGACTGGAGTAGAGTGAGCAGGGGGAAGAGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 72 bp | ACAATGGCCTCTGCTGTTTCTCAAACAAACCAAGCATaGTTCCAGCTTCGGAGCTTTGCACCGTTTCATCTG | + |
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Preference number: 6 (lower is better) Translates to: TMASAVSQTNQA*FQLRSFAPFHL Trigger: CAGATGAAACGGTGCAAAGCTCCGAAGCTGGAAGCATGCTTGGTTTGTTTGAGAAACAGCAGAGGCCATTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS GCA 72 bp | ATCCACATGGTAATCCCCTTACCTCCTTCGAGTCTTTaGTCACATTACCTTTTCAATGAGGTCACCGTGACT | + |
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Preference number: 6 (lower is better) Translates to: IHMVIPLPPSSL*SHYLFNEVTVT Trigger: AGTCACGGTGACCTCATTGAAAAGGTAATGTGAGCAAAGACTCGAAGGAGGTAAGGGGATTACCATGTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS CCA 72 bp | GTGGTGCAATCATGTCTCAATGCAGTCTTGAACTTCTaGCTTGAACTTCAAGCAATCCTCTTGCCTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: VVQSCLNAVLNF*LELQAILLPSP Trigger: AGGTGAAGGCAAGAGGATTGCTTGAAGTTCAAGCCAGAAGTTCAAGACTGCATTGAGACATGATTGCACCAC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS CAA 90 bp | ATCCTTCTTAAACGTAAGTCACTTCATGTCACTCCTCTGTTCTGCTaGCCATTTCAAAGTCCCTACAATGGCACCCATAACCCTACAGGA | + |
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Preference number: 6 (lower is better) Translates to: ILLKRKSLHVTPLFC*PFQSPYNGTHNPTG Trigger: TCCTGTAGGGTTATGGGTGCCATTGTAGGGACTTTGAAATGGCAAGCAGAACAGAGGAGTGACATGAAGTGACTTACGTTTAAGAAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS TCA 72 bp | GAAATATATTCCGTCACAATTCTAGAGGCTAGAGTCTaGAATGAAGGTGTTGGCAGGGCCATATTCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: EIYSVTILEARV*NEGVGRAIFPL Trigger: CAGAGGGAATATGGCCCTGCCAACACCTTCATTTCAGACTCTAGCCTCTAGAATTGTGACGGAATATATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS CAA 72 bp | AAACGTAAGTCACTTCATGTCACTCCTCTGTTCTGCTaGCCATTTCAAAGTCCCTACAATGGCACCCATAAC | + |
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Preference number: 6 (lower is better) Translates to: KRKSLHVTPLFC*PFQSPYNGTHN Trigger: GTTATGGGTGCCATTGTAGGGACTTTGAAATGGCAAGCAGAACAGAGGAGTGACATGAAGTGACTTACGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000469461.6 |
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| CDS TCA 72 bp | CTCCCCTCCCATATCCAGTCCATCAAGAAATCCTGCTaGCTCTACCTTCGAAATATATCTTTTCTCAATAAC | + |
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Preference number: 6 (lower is better) Translates to: LPSHIQSIKKSC*LYLRNISFLNN Trigger: GTTATTGAGAAAAGATATATTTCGAAGGTAGAGTCAGCAGGATTTCTTGATGGACTGGATATGGGAGGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000469461.6 ENST00000472960.1 |
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