Pregenerated sensors for CASTOR3 (Homo sapiens)
Ensembl gene IDs: ENSG00000239521Ensembl transcript IDs: ENST00000328453.9, ENST00000414739.3, ENST00000414997.1, ENST00000435519.6, ENST00000437485.5, ENST00000440058.5, ENST00000445230.1, ENST00000454084.5, ENST00000543273.5, ENST00000649671.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATGCAGAGCCAGCGGTGCTTGAGGCTGGGGCGCATGCCCTCTACCTaGTCTGTAATCCCGAATTCACTTTCTTCAGCCGGGCGGACTTTG | + |
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Preference number: 5 (lower is better) Translates to: MQSQRCLRLGRMPST*SVIPNSLSSAGRTL Trigger: CAAAGTCCGCCCGGCTGAAGAAAGTGAATTCGGGATTACAGAGCAGGTAGAGGGCATGCGCCCCAGCCTCAAGCACCGCTGGCTCTGCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 90 bp | ATGGTGAGTAGACCACCCTGCCCTTCTCTCTCAAGAACTAGGGGCTaGTGTGCCAAAGAGAAGCCAGGGTGTTTCCCCTCTCTCCGCTCG | + |
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Preference number: 5 (lower is better) Translates to: MVSRPPCPSLSRTRG*CAKEKPGCFPSLRS Trigger: CGAGCGGAGAGAGGGGAAACACCCTGGCTTCTCTTTGGCACATCAGCCCCTAGTTCTTGAGAGAGAAGGGCAGGGTGGTCTACTCACCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000435519.6 |
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| CDS CCA 90 bp | TTCCCAGCAGTCAGCCCGTCGCAGGCACCGAGAGGTCAAGGTTCTTaGGTCCACAATATTTCCAGACTCCACACAACCCTTCAGGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: FPAVSPSQAPRGQGS*VHNISRLHTTLQVL Trigger: CAGGACCTGAAGGGTTGTGTGGAGTCTGGAAATATTGTGGACCCAAGAACCTTGACCTCTCGGTGCCTGCGACGGGCTGACTGCTGGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000414997.1 |
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| CDS GCA 90 bp | CAGCTGTCGAGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTaGCAGAGTTGCCTCTCAGATGTGGATACTGAGATCCAGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: QLSSLRDRMVAFCEL*QSCLSDVDTEIQEQ Trigger: CTGCTCCTGGATCTCAGTATCCACATCTGAGAGGCAACTCTGGCAGAGTTCACAGAAGGCCACCATTCTGTCCCTCAAACTCGACAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 90 bp | ATAACATTCCCCTTTCTCCCCCAAAGCACTCATGACCTGACTCGCTaGGAGCTCTATGAGCCATGTTGCCAACTCCTGCAGAAGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: ITFPFLPQSTHDLTR*ELYEPCCQLLQKAV Trigger: CACAGCCTTCTGCAGGAGTTGGCAACATGGCTCATAGAGCTCCCAGCGAGTCAGGTCATGAGTGCTTTGGGGGAGAAAGGGGAATGTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 90 bp | GCAGGTATGTATTTCTCACAGTTCTGGAGGCTGAAGTCCAAGGGTTaGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGACTGCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: AGMYFSQFWRLKSKG*VLVRAFFQPVDCWL Trigger: AAGCCAGCAGTCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCAACCCTTGGACTTCAGCCTCCAGAACTGTGAGAAATACATACCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000414739.3 ENST00000445230.1 |
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| CDS TCA 90 bp | GGAGGAACTGCTGCTGGTGTAGTGGGAAAAGCCTGGCATTTGGAGTaGGGTGACATGAGTGCTAGTCCTCAACTCCATGTCAAGTTAGCG | + |
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Preference number: 5 (lower is better) Translates to: GGTAAGVVGKAWHLE*GDMSASPQLHVKLA Trigger: CGCTAACTTGACATGGAGTTGAGGACTAGCACTCATGTCACCTCACTCCAAATGCCAGGCTTTTCCCACTACACCAGCAGCAGTTCCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414739.3 |
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| CDS GCA 90 bp | TCCAAGGGTTGGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGACTaGTGGCTTCTAGTTGTATCCTCACCCATTGAAGTAGGACATGAC | + |
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Preference number: 5 (lower is better) Translates to: SKGWVLVRAFFQPVD*WLLVVSSPIEVGHD Trigger: GTCATGTCCTACTTCAATGGGTGAGGATACAACTAGAAGCCAGCAGTCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCAACCCTTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000414739.3 |
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| CDS CCA 90 bp | GATCAGGTGGGTGGGGGTCACCTCTTACATTCCTCTCTTAGAAGGTaGACTCTACTTCCAGGGTCTTCTTGGATTTCCTGGAAGCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: DQVGGGHLLHSSLRR*TLLPGSSWISWKPR Trigger: CCTTGGCTTCCAGGAAATCCAAGAAGACCCTGGAAGTAGAGTCCACCTTCTAAGAGAGGAATGTAAGAGGTGACCCCCACCCACCTGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 90 bp | GGCTTGGGTGTAGCTCAGAAATATAGGGCAGGAAGCTTAAGTCTGTaGTTCCCTTTTGCCTTCCATGTGAGCCAGGTGATTCCCAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GLGVAQKYRAGSLSL*FPFAFHVSQVIPRR Trigger: CCTCCTGGGAATCACCTGGCTCACATGGAAGGCAAAAGGGAATCACAGACTTAAGCTTCCTGCCCTATATTTCTGAGCTACACCCAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000328453.9 ENST00000414997.1 ENST00000437485.5 ENST00000440058.5 ENST00000454084.5 ENST00000543273.5 ENST00000649671.1 |
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| CDS GCA 90 bp | AGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTaGCTCTCAGATGTGGATACTGAGATCCAGGAGCAGGTGAGTACT | + |
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Preference number: 5 (lower is better) Translates to: SLRDRMVAFCELCQS*LSDVDTEIQEQVST Trigger: AGTACTCACCTGCTCCTGGATCTCAGTATCCACATCTGAGAGGCAACTCTGGCAGAGTTCACAGAAGGCCACCATTCTGTCCCTCAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 90 bp | AAATCCAGGATGAGTCAAATGAAGAACGGCAGGATACAGACATGGTaGGTAGACCACCCTGCCCTTCTCTCTCAAGAACTAGGGGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: KSRMSQMKNGRIQTW*VDHPALLSQELGAD Trigger: ATCAGCCCCTAGTTCTTGAGAGAGAAGGGCAGGGTGGTCTACTCACCATGTCTGTATCCTGCCGTTCTTCATTTGACTCATCCTGGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000435519.6 |
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| CDS GCA 90 bp | AACTCTCAGGGGTCCTCAAAGAACAGTTTGAAAAGCCAGTCTCTTTaGCCCTACATCAGACTCAGCCTTATGGAAGAGGACGAGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: NSQGSSKNSLKSQSL*PYIRLSLMEEDEEE Trigger: TTCTTCCTCGTCCTCTTCCATAAGGCTGAGTCTGATGTAGGGGCAAAGAGACTGGCTTTTCAAACTGTTCTTTGAGGACCCCTGAGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000435519.6 |
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| CDS CCA 90 bp | CACATTTCTAAATCAGATGCTTCCCAGGTGAGTGTGGGTCTTAGATaGGATAATGGGAACAGAGGAGTCTGTGTCTTCATTCTTCCCCTT | + |
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Preference number: 5 (lower is better) Translates to: HISKSDASQVSVGLR*DNGNRGVCVFILPL Trigger: AAGGGGAAGAATGAAGACACAGACTCCTCTGTTCCCATTATCCCATCTAAGACCCACACTCACCTGGGAAGCATCTGATTTAGAAATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 90 bp | TCTCTTAGAAGGTGGACTCTACTTCCAGGGTCTTCTTGGATTTCCTaGAAGCCAAGGATAATATTGAGGGATTCTAGAAGACGTAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: SLRRWTLLPGSSWIS*KPRIILRDSRRRRV Trigger: TACTCTACGTCTTCTAGAATCCCTCAATATTATCCTTGGCTTCCAGGAAATCCAAGAAGACCCTGGAAGTAGAGTCCACCTTCTAAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 90 bp | TTACATTCCTCTCTTAGAAGGTGGACTCTACTTCCAGGGTCTTCTTaGATTTCCTGGAAGCCAAGGATAATATTGAGGGATTCTAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: LHSSLRRWTLLPGSS*ISWKPRIILRDSRR Trigger: TCTTCTAGAATCCCTCAATATTATCCTTGGCTTCCAGGAAATCCAAGAAGACCCTGGAAGTAGAGTCCACCTTCTAAGAGAGGAATGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 90 bp | AGTAAATTAGGGAGCGGTGACATTTCTACTTCGTGTAGATGCCTCTaGAGAATGTCCAGAATATCACTCATTTTCCACTGGAAAAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: SKLGSGDISTSCRCL*RMSRISLIFHWKRN Trigger: ATTCCTTTTCCAGTGGAAAATGAGTGATATTCTGGACATTCTTCAGAGGCATCTACACGAAGTAGAAATGTCACCGCTCCCTAATTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 72 bp | CAGCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTaGCTTTATGGGGTGCTGGAGATGGATGCAGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: QRRRLLAGFCKL*LYGVLEMDAAS Trigger: TGAGGCTGCATCCATCTCCAGCACCCCATAAAGCAACAGCTTGCAGAACCCGGCTAGGAGGCGGCGCCGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000328453.9 ENST00000414997.1 ENST00000437485.5 ENST00000440058.5 ENST00000454084.5 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 72 bp | TCTTCATCCAGCCGGGAGACCTGGGCAGTGGTGCAGTaGCTCTATACCTGGGGCTCAGTAAGGGCTGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSSRETWAVVQ*LYTWGSVRAGA Trigger: AGCCCCAGCCCTTACTGAGCCCCAGGTATAGAGTCACTGCACCACTGCCCAGGTCTCCCGGCTGGATGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000328453.9 ENST00000414997.1 ENST00000437485.5 ENST00000440058.5 ENST00000543273.5 ENST00000649671.1 |
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| CDS GCA 72 bp | CAGCGGTGCTTGAGGCTGGGGCGCATGCCCTCTACCTaGTCTGTAATCCCGAATTCACTTTCTTCAGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: QRCLRLGRMPST*SVIPNSLSSAG Trigger: CCCGGCTGAAGAAAGTGAATTCGGGATTACAGAGCAGGTAGAGGGCATGCGCCCCAGCCTCAAGCACCGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 72 bp | AGCCGGGCGGACTTTGCCCGCAGCCAGCTAGTAGATTaGCTGACTGACCGCTTCCAGCAGGAGCTTGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: SRADFARSQLVD*LTDRFQQELEE Trigger: CTCTTCAAGCTCCTGCTGGAAGCGGTCAGTCAGCAAATCTACTAGCTGGCTGCGGGCAAAGTCCGCCCGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS GCA 72 bp | CTCGCTGGGAGCTCTATGAGCCATGTTGCCAACTCCTaGAGAAGGCTGTGGACACAGGAGAGGTTCCTCACC | + |
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Preference number: 6 (lower is better) Translates to: LAGSSMSHVANS*RRLWTQERFLT Trigger: GGTGAGGAACCTCTCCTGTGTCCACAGCCTTCTGCAGGAGTTGGCAACATGGCTCATAGAGCTCCCAGCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 72 bp | TCTAGGTGGCCACTAGGTGTGTCAAGTCTCAGTGCGTaGAGTGGACAAAGCGAGGAAGATCAGGTGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SRWPLGVSSLSA*SGQSEEDQVGG Trigger: CCCACCCACCTGATCTTCCTCGCTTTGTCCACTCCACGCACTGAGACTTGACACACCTAGTGGCCACCTAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 72 bp | CCCTTTCTCCCCCAAAGCACTCATGACCTGACTCGCTaGGAGCTCTATGAGCCATGTTGCCAACTCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PFLPQSTHDLTR*ELYEPCCQLLQ Trigger: CTGCAGGAGTTGGCAACATGGCTCATAGAGCTCCCAGCGAGTCAGGTCATGAGTGCTTTGGGGGAGAAAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 90 bp | ATTCCCAGCAGTCAGCCCGTCGCAGGCACCGAGAGGTCAAGGTTCTaGGGTCCACAATATTTCCAGACTCCACACAACCCTTCAGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: IPSSQPVAGTERSRF*GPQYFQTPHNPSGP Trigger: AGGACCTGAAGGGTTGTGTGGAGTCTGGAAATATTGTGGACCCAAGAACCTTGACCTCTCGGTGCCTGCGACGGGCTGACTGCTGGGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000414997.1 |
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| CDS CAA 90 bp | ACTTTCTTCAGCCGGGCGGACTTTGCCCGCAGCCAGCTAGTAGATTaGCTGACTGACCGCTTCCAGCAGGAGCTTGAAGAGCTGTTACAG | + |
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Preference number: 6 (lower is better) Translates to: TFFSRADFARSQLVD*LTDRFQQELEELLQ Trigger: CTGTAACAGCTCTTCAAGCTCCTGCTGGAAGCGGTCAGTCAGCAAATCTACTAGCTGGCTGCGGGCAAAGTCCGCCCGGCTGAAGAAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 72 bp | CACACAACCCTTCAGGTCCTGGCCTGGGCAACCAGCTaGTGCGGTGAGCTTTTCTCATCATCTCCTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: HTTLQVLAWATS*CGELFSSSPVF Trigger: GAAGACAGGAGATGATGAGAAAAGCTCACCGCATCAGCTGGTTGCCCAGGCCAGGACCTGAAGGGTTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000328453.9 |
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| CDS GCA 72 bp | TGGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGACTaGTGGCTTCTAGTTGTATCCTCACCTAGACTGCCA | + |
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Preference number: 6 (lower is better) Translates to: WVLVRAFFQPVD*WLLVVSSPRLP Trigger: TGGCAGTCTAGGTGAGGATACAACTAGAAGCCAGCAGTCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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| CDS CAA 90 bp | AGCAGGTATGTATTTCTCACAGTTCTGGAGGCTGAAGTCCAAGGGTaGGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGACTGCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: SRYVFLTVLEAEVQG*GSGEGLLPACRLLA Trigger: AGCCAGCAGTCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCAACCCTTGGACTTCAGCCTCCAGAACTGTGAGAAATACATACCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000414739.3 ENST00000445230.1 |
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| CDS GCA 72 bp | GACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTaGCTCTCAGATGTGGATACTGAGATCCAGGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: DRMVAFCELCQS*LSDVDTEIQEQ Trigger: CTGCTCCTGGATCTCAGTATCCACATCTGAGAGGCAACTCTGGCAGAGTTCACAGAAGGCCACCATTCTGTC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS GCA 72 bp | TCCCTTTCTAACCTAGCCTGTTTCCCCAGGAGGAACTaGTGCTGGTGTAGTGGGAAAAGCCTGGCATTTGGA | + |
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Preference number: 6 (lower is better) Translates to: SLSNLACFPRRN*CWCSGKSLAFG Trigger: TCCAAATGCCAGGCTTTTCCCACTACACCAGCAGCAGTTCCTCCTGGGGAAACAGGCTAGGTTAGAAAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414739.3 |
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| CDS CAA 72 bp | GTATTTCTCACAGTTCTGGAGGCTGAAGTCCAAGGGTaGGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: VFLTVLEAEVQG*GSGEGLLPACR Trigger: TCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCAACCCTTGGACTTCAGCCTCCAGAACTGTGAGAAATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000414739.3 ENST00000445230.1 |
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| CDS GCA 72 bp | TGGGTTCTGGTGAGGGCCTTCTTCCAGCCTGTAGACTaGTGGCTTCTAGTTGTATCCTCACCCATTGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: WVLVRAFFQPVD*WLLVVSSPIEV Trigger: TACTTCAATGGGTGAGGATACAACTAGAAGCCAGCAGTCTACAGGCTGGAAGAAGGCCCTCACCAGAACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000414739.3 |
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| CDS CCA 72 bp | GGTGGGGGTCACCTCTTACATTCCTCTCTTAGAAGGTaGACTCTACTTCCAGGGTCTTCTTGGATTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GGGHLLHSSLRR*TLLPGSSWISW Trigger: CCAGGAAATCCAAGAAGACCCTGGAAGTAGAGTCCACCTTCTAAGAGAGGAATGTAAGAGGTGACCCCCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 72 bp | AAGGTACACCAAGGCCCCTTGATTTTTATCCCATCATaGATCCTGCTTCATTCCCAGCAGTCAGCCCGTCGC | + |
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Preference number: 6 (lower is better) Translates to: KVHQGPLIFIPS*ILLHSQQSARR Trigger: GCGACGGGCTGACTGCTGGGAATGAAGCAGGATCAATGATGGGATAAAAATCAAGGGGCCTTGGTGTACCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000414997.1 |
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| CDS GCA 72 bp | AGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTaGCAGAGTTGCCTCTCAGATGTGGATACTGAGATC | + |
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Preference number: 6 (lower is better) Translates to: SLRDRMVAFCEL*QSCLSDVDTEI Trigger: GATCTCAGTATCCACATCTGAGAGGCAACTCTGGCAGAGTTCACAGAAGGCCACCATTCTGTCCCTCAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 72 bp | GCCAGCCTCTTGAAACTCAGACAGACTTGTTTGCTCTaGTTTTGCCTTGTGGAGCAGCACAGCACCTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: ASLLKLRQTCLL*FCLVEQHSTSV Trigger: AACAGAGGTGCTGTGCTGCTCCACAAGGCAAAACAAGAGCAAACAAGTCTGTCTGAGTTTCAAGAGGCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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| CDS GCA 72 bp | GGGTCCTCAAAGAACAGTTTGAAAAGCCAGTCTCTTTaGCCCTACATCAGACTCAGCCTTATGGAAGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: GSSKNSLKSQSL*PYIRLSLMEED Trigger: GTCCTCTTCCATAAGGCTGAGTCTGATGTAGGGGCAAAGAGACTGGCTTTTCAAACTGTTCTTTGAGGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000435519.6 |
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| CDS CCA 72 bp | GTCTTACAAACAGCAGGTATGTATTTCTCACAGTTCTaGAGGCTGAAGTCCAAGGGTTGGGTTCTGGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: VLQTAGMYFSQF*RLKSKGWVLVR Trigger: CCTCACCAGAACCCAACCCTTGGACTTCAGCCTCCAGAACTGTGAGAAATACATACCTGCTGTTTGTAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000414739.3 ENST00000445230.1 |
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| CDS CCA 72 bp | AACTCAGACAGACTTGTTTGCTCTTGTTTTGCCTTGTaGAGCAGCACAGCACCTCTGTTCTCTCTTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: NSDRLVCSCFAL*SSTAPLFSLVP Trigger: AGGGACAAGAGAGAACAGAGGTGCTGTGCTGCTCCACAAGGCAAAACAAGAGCAAACAAGTCTGTCTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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| CDS TCA 72 bp | ATGAGTCAAATGAAGAACGGCAGGATACAGACATGGTaGGTAGACCACCCTGCCCTTCTCTCTCAAGAACTA | + |
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Preference number: 6 (lower is better) Translates to: MSQMKNGRIQTW*VDHPALLSQEL Trigger: TAGTTCTTGAGAGAGAAGGGCAGGGTGGTCTACTCACCATGTCTGTATCCTGCCGTTCTTCATTTGACTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000328453.9 ENST00000435519.6 |
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| CDS TCA 72 bp | AAGGCGAGTATCCCTGCCCCCATTCCAAGGAGAAATTaGCAGTGTCATTTCTACCTTGGGAAACATTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: KASIPAPIPRRN*QCHFYLGKHSV Trigger: GACAGAATGTTTCCCAAGGTAGAAATGACACTGTCAATTTCTCCTTGGAATGGGGGCAGGGATACTCGCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 72 bp | CAAGGCGAGTATCCCTGCCCCCATTCCAAGGAGAAATaGACAGTGTCATTTCTACCTTGGGAAACATTCTGT | + |
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Preference number: 6 (lower is better) Translates to: QGEYPCPHSKEK*TVSFLPWETFC Trigger: ACAGAATGTTTCCCAAGGTAGAAATGACACTGTCAATTTCTCCTTGGAATGGGGGCAGGGATACTCGCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 72 bp | GTAGCTCAGAAATATAGGGCAGGAAGCTTAAGTCTGTaGTTCCCTTTTGCCTTCCATGTGAGCCAGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: VAQKYRAGSLSL*FPFAFHVSQVI Trigger: AATCACCTGGCTCACATGGAAGGCAAAAGGGAATCACAGACTTAAGCTTCCTGCCCTATATTTCTGAGCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000328453.9 ENST00000414997.1 ENST00000437485.5 ENST00000440058.5 ENST00000454084.5 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 72 bp | GGGAGCGGTGACATTTCTACTTCGTGTAGATGCCTCTaGAGAATGTCCAGAATATCACTCATTTTCCACTGG | + |
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Preference number: 6 (lower is better) Translates to: GSGDISTSCRCL*RMSRISLIFHW Trigger: CCAGTGGAAAATGAGTGATATTCTGGACATTCTTCAGAGGCATCTACACGAAGTAGAAATGTCACCGCTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 72 bp | AAATCAGATGCTTCCCAGGTGAGTGTGGGTCTTAGATaGGATAATGGGAACAGAGGAGTCTGTGTCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: KSDASQVSVGLR*DNGNRGVCVFI Trigger: AATGAAGACACAGACTCCTCTGTTCCCATTATCCCATCTAAGACCCACACTCACCTGGGAAGCATCTGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CCA 72 bp | AGGTGGACTCTACTTCCAGGGTCTTCTTGGATTTCCTaGAAGCCAAGGATAATATTGAGGGATTCTAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: RWTLLPGSSWIS*KPRIILRDSRR Trigger: TCTTCTAGAATCCCTCAATATTATCCTTGGCTTCCAGGAAATCCAAGAAGACCCTGGAAGTAGAGTCCACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS TCA 72 bp | CCTCTGTTCTCTCTTGTCCCTCTGACAAGCAGTATTTaGAGACGGCTGTTGTCATTTTGTACTTTCACTGTT | + |
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Preference number: 6 (lower is better) Translates to: PLFSLVPLTSSI*RRLLSFCTFTV Trigger: AACAGTGAAAGTACAAAATGACAACAGCCGTCTTCAAATACTGCTTGTCAGAGGGACAAGAGAGAACAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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| CDS CAA 72 bp | ACCTCTGTTCTCTCTTGTCCCTCTGACAAGCAGTATTaGAAGACGGCTGTTGTCATTTTGTACTTTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: TSVLSCPSDKQY*KTAVVILYFHC Trigger: ACAGTGAAAGTACAAAATGACAACAGCCGTCTTCAAATACTGCTTGTCAGAGGGACAAGAGAGAACAGAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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| CDS CAA 72 bp | TCAAACCCTTTGTTGTTACAGGTTATCCTGCCAGCCTaGACTCTTGTCTATTTTTCCATTCTCTGGACACTA | + |
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Preference number: 6 (lower is better) Translates to: SNPLLLQVILPA*TLVYFSILWTL Trigger: TAGTGTCCAGAGAATGGAAAAATAGACAAGAGTCAAGGCTGGCAGGATAACCTGTAACAACAAAGGGTTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 90 bp | CCTCATTTTTCAAACCCTTTGTTGTTACAGGTTATCCTGCCAGCCTaGACTCTTGTCTATTTTTCCATTCTCTGGACACTAACCCACATT | + |
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Preference number: 6 (lower is better) Translates to: PHFSNPLLLQVILPA*TLVYFSILWTLTHI Trigger: AATGTGGGTTAGTGTCCAGAGAATGGAAAAATAGACAAGAGTCAAGGCTGGCAGGATAACCTGTAACAACAAAGGGTTTGAAAAATGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000328453.9 ENST00000543273.5 ENST00000649671.1 |
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| CDS CAA 90 bp | TCTTGTCCCTCTGACAAGCAGTATTTGAAGACGGCTGTTGTCATTTaGTACTTTCACTGTTTTCTTCTGTGGTTTAAGGAATGCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SCPSDKQYLKTAVVI*YFHCFLLWFKECFS Trigger: GCTGAAGCATTCCTTAAACCACAGAAGAAAACAGTGAAAGTACAAAATGACAACAGCCGTCTTCAAATACTGCTTGTCAGAGGGACAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445230.1 |
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