Pregenerated sensors for CASP4 (Homo sapiens)
Ensembl gene IDs: ENSG00000196954Ensembl transcript IDs: ENST00000393150.7, ENST00000417440.2, ENST00000444739.7, ENST00000524843.5, ENST00000525116.5, ENST00000529183.5, ENST00000529565.1, ENST00000531333.5, ENST00000531546.1, ENST00000533730.5, ENST00000534356.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGACCCACAGTTCCCCACGGTTTGCTATGGAGACATTAACTTTCTaGACACTGCTGTGCCTCCCACAGAATGGCTGTCACAGTTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LTHSSPRFAMETLTF*TLLCLPQNGCHSCP Trigger: TGGGCAACTGTGACAGCCATTCTGTGGGAGGCACAGCAGTGTGCAGAAAGTTAATGTCTCCATAGCAAACCGTGGGGAACTGTGGGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000525116.5 ENST00000529565.1 |
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| CDS TCA 90 bp | GGTCAAGATGGTTACCCCTTGCTGCCTTCATCCCATCCCTCATCATaGTTCTTCTTGCATCCTCTTCCATGTGCTCTTGCCACTTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: GQDGYPLLPSSHPSS*FFLHPLPCALATSL Trigger: AAGGGAAGTGGCAAGAGCACATGGAAGAGGATGCAAGAAGAATCATGATGAGGGATGGGATGAAGGCAGCAAGGGGTAACCATCTTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 90 bp | TGCCATTTTCTCCACTCACGTTCTCTTTTGGTCACACTGTCTCATTaGAGTTCTTTAAACATGTTTAGTGCATTGCTATCCCAGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: CHFLHSRSLLVTLSH*SSLNMFSALLSQGI Trigger: AATGCCCTGGGATAGCAATGCACTAAACATGTTTAAAGAACTGCAATGAGACAGTGTGACCAAAAGAGAACGTGAGTGGAGAAAATGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 90 bp | AAGAAGCATTTGTCCTGCCATACGTTGCTTCTCTTGCATAGAGTCTaGCATGACCCGAACTTTGTCTTCAGTTTTAGCATCGTAATATTT | + |
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Preference number: 5 (lower is better) Translates to: KKHLSCHTLLLLHRV*HDPNFVFSFSIVIF Trigger: AAATATTACGATGCTAAAACTGAAGACAAAGTTCGGGTCATGGCAGACTCTATGCAAGAGAAGCAACGTATGGCAGGACAAATGCTTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000393150.7 ENST00000417440.2 ENST00000444739.7 ENST00000524843.5 ENST00000529183.5 ENST00000531333.5 ENST00000531546.1 ENST00000533730.5 |
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| CDS TCA 90 bp | TTTTTCATCATCACATTCTGCTGCGGTTTTCCTTACCTCCTTGATTaGTTGATTGATTGCCTGATTAATTGTAGAGTTGGAGGAATCCAA | + |
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Preference number: 5 (lower is better) Translates to: FFIITFCCGFPYLLD*LIDCLINCRVGGIQ Trigger: TTGGATTCCTCCAACTCTACAATTAATCAGGCAATCAATCAATCAATCAAGGAGGTAAGGAAAACCGCAGCAGAATGTGATGATGAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CCA 72 bp | TTTCTGACAGTGCTAGGGAGGCTGGGCAGATTGGACTaGGCAGCAGTCTTCACAGTGCAGCACAGCCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FLTVLGRLGRLD*AAVFTVQHSRC Trigger: ACAGCGGCTGTGCTGCACTGTGAAGACTGCTGCCCAGTCCAATCTGCCCAGCCTCCCTAGCACTGTCAGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000417440.2 |
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| CDS CAA 90 bp | AGGCATGAGCCACCATCCTCAGCCAGCCATGAGGCAATTGAATCTTaGGAGCAAAGTGGCACTGCAACATTCTACAGTCCCCTGATCTCT | + |
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Preference number: 6 (lower is better) Translates to: RHEPPSSASHEAIES*EQSGTATFYSPLIS Trigger: AGAGATCAGGGGACTGTAGAATGTTGCAGTGCCACTTTGCTCCAAAGATTCAATTGCCTCATGGCTGGCTGAGGATGGTGGCTCATGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS TCA 72 bp | GGTTACCCCTTGCTGCCTTCATCCCATCCCTCATCATaGTTCTTCTTGCATCCTCTTCCATGTGCTCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: GYPLLPSSHPSS*FFLHPLPCALA Trigger: GGCAAGAGCACATGGAAGAGGATGCAAGAAGAATCATGATGAGGGATGGGATGAAGGCAGCAAGGGGTAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 72 bp | AGTTCCCCACGGTTTGCTATGGAGACATTAACTTTCTaGACACTGCTGTGCCTCCCACAGAATGGCTGTCAC | + |
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Preference number: 6 (lower is better) Translates to: SSPRFAMETLTF*TLLCLPQNGCH Trigger: GTGACAGCCATTCTGTGGGAGGCACAGCAGTGTGCAGAAAGTTAATGTCTCCATAGCAAACCGTGGGGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000525116.5 ENST00000529565.1 ENST00000534356.1 |
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| CDS CCA 72 bp | CACCATCCTCAGCCAGCCATGAGGCAATTGAATCTTTaGAGCAAAGTGGCACTGCAACATTCTACAGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: HHPQPAMRQLNL*SKVALQHSTVP Trigger: GGGGACTGTAGAATGTTGCAGTGCCACTTTGCTCCAAAGATTCAATTGCCTCATGGCTGGCTGAGGATGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 72 bp | CCACCATCCTCAGCCAGCCATGAGGCAATTGAATCTTaGGAGCAAAGTGGCACTGCAACATTCTACAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: PPSSASHEAIES*EQSGTATFYSP Trigger: GGGACTGTAGAATGTTGCAGTGCCACTTTGCTCCAAAGATTCAATTGCCTCATGGCTGGCTGAGGATGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 72 bp | GGCATGAGCCACCATCCTCAGCCAGCCATGAGGCAATaGAATCTTTGGAGCAAAGTGGCACTGCAACATTCT | + |
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Preference number: 6 (lower is better) Translates to: GMSHHPQPAMRQ*NLWSKVALQHS Trigger: AGAATGTTGCAGTGCCACTTTGCTCCAAAGATTCAATTGCCTCATGGCTGGCTGAGGATGGTGGCTCATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 72 bp | TTTGCTATGGAGACATTAACTTTCTGCACACTGCTGTaGCTCCCACAGAATGGCTGTCACAGTTGCCCACCT | + |
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Preference number: 6 (lower is better) Translates to: FAMETLTFCTLL*LPQNGCHSCPP Trigger: AGGTGGGCAACTGTGACAGCCATTCTGTGGGAGGCACAGCAGTGTGCAGAAAGTTAATGTCTCCATAGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000525116.5 ENST00000529565.1 |
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| CDS CAA 90 bp | CCCATCCCTCATCATGATTCTTCTTGCATCCTCTTCCATGTGCTCTaGCCACTTCCCTTGACTTCCATCTGTGACATCTTAGTCTATTCA | + |
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Preference number: 6 (lower is better) Translates to: PIPHHDSSCILFHVL*PLPLTSICDILVYS Trigger: TGAATAGACTAAGATGTCACAGATGGAAGTCAAGGGAAGTGGCAAGAGCACATGGAAGAGGATGCAAGAAGAATCATGATGAGGGATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 72 bp | TTGCACTGGCTGTATTCTGTGCTGGAACACTTTTCCTaGATAAGAACCACATTATTCACTCCCCAACTCTGT | + |
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Preference number: 6 (lower is better) Translates to: LHWLYSVLEHFS*IRTTLFTPQLC Trigger: ACAGAGTTGGGGAGTGAATAATGTGGTTCTTATGCAGGAAAAGTGTTCCAGCACAGAATACAGCCAGTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 72 bp | CATCATGATTCTTCTTGCATCCTCTTCCATGTGCTCTaGCCACTTCCCTTGACTTCCATCTGTGACATCTTA | + |
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Preference number: 6 (lower is better) Translates to: HHDSSCILFHVL*PLPLTSICDIL Trigger: TAAGATGTCACAGATGGAAGTCAAGGGAAGTGGCAAGAGCACATGGAAGAGGATGCAAGAAGAATCATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 90 bp | CATGATTCTTCTTGCATCCTCTTCCATGTGCTCTTGCCACTTCCCTaGACTTCCATCTGTGACATCTTAGTCTATTCACCAAAATGTGAT | + |
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Preference number: 6 (lower is better) Translates to: HDSSCILFHVLLPLP*TSICDILVYSPKCD Trigger: ATCACATTTTGGTGAATAGACTAAGATGTCACAGATGGAAGTCAAGGGAAGTGGCAAGAGCACATGGAAGAGGATGCAAGAAGAATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS GCA 72 bp | CTCCACTCACGTTCTCTTTTGGTCACACTGTCTCATTaGAGTTCTTTAAACATGTTTAGTGCATTGCTATCC | + |
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Preference number: 6 (lower is better) Translates to: LHSRSLLVTLSH*SSLNMFSALLS Trigger: GGATAGCAATGCACTAAACATGTTTAAAGAACTGCAATGAGACAGTGTGACCAAAAGAGAACGTGAGTGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 90 bp | GGCATATTCCAAGCATCTAGAACAAAACCTGGTGCACAGTTAGTGTaGGCAAATATTAGTCAACAAACAATTCAATGTCCAAATGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GIFQASRTKPGAQLV*ANISQQTIQCPNAA Trigger: GGCTGCATTTGGACATTGAATTGTTTGTTGACTAATATTTGCCAACACTAACTGTGCACCAGGTTTTGTTCTAGATGCTTGGAATATGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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| CDS CAA 72 bp | CAAGCATCTAGAACAAAACCTGGTGCACAGTTAGTGTaGGCAAATATTAGTCAACAAACAATTCAATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: QASRTKPGAQLV*ANISQQTIQCP Trigger: TGGACATTGAATTGTTTGTTGACTAATATTTGCCAACACTAACTGTGCACCAGGTTTTGTTCTAGATGCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529565.1 |
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