Pregenerated sensors for CASC9 (Homo sapiens)
Ensembl gene IDs: ENSG00000249395Ensembl transcript IDs: ENST00000504531.3, ENST00000521147.2, ENST00000522183.2, ENST00000523313.2, ENST00000654852.2, ENST00000669950.1, ENST00000670695.1, ENST00000675539.1, ENST00000675549.1, ENST00000675884.1, ENST00000675897.1, ENST00000676127.1, ENST00000676364.1
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGGCTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATTGC | + |
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Preference number: 5 (lower is better) Translates to: RLHLTRECQTVGAGQ*VRAPCASRSRARHC Trigger: GCAATGCCTCGCCCTGCTTCGGCTCGCGCATGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAAGCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670695.1 |
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| CDS GCA 90 bp | CACAGCTGGGAGGCGGGTAGCCTGGTTCAAGTTCTCAGCCCTGCTTaGCCACTGCCTGGAAACAGACTTAGTGTTGTTGGGGGTGGGGGT | + |
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Preference number: 5 (lower is better) Translates to: HSWEAGSLVQVLSPA*PLPGNRLSVVGGGG Trigger: ACCCCCACCCCCAACAACACTAAGTCTGTTTCCAGGCAGTGGGCAAGCAGGGCTGAGAACTTGAACCAGGCTACCCGCCTCCCAGCTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CCA 90 bp | CCAGAGGCACTGGGAAAAGCCTTCACAGCTGGGAGGCGGGTAGCCTaGTTCAAGTTCTCAGCCCTGCTTGCCCACTGCCTGGAAACAGAC | + |
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Preference number: 5 (lower is better) Translates to: PEALGKAFTAGRRVA*FKFSALLAHCLETD Trigger: GTCTGTTTCCAGGCAGTGGGCAAGCAGGGCTGAGAACTTGAACCAGGCTACCCGCCTCCCAGCTGTGAAGGCTTTTCCCAGTGCCTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS TCA 90 bp | CAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGG | + |
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Preference number: 5 (lower is better) Translates to: QLRSTAPSVSDAEDG*FLHFHLRYRVHLTR Trigger: CCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000669950.1 ENST00000676364.1 |
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| CDS TCA 90 bp | CAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTGGT | + |
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Preference number: 5 (lower is better) Translates to: QLRSTAPSVSDAEDG*FLHFHLRYRVHLTG Trigger: ACCAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000675897.1 |
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| CDS CCA 90 bp | TTAGTGTTGTTGGGGGTGGGGGTGGTGGGAGTAAGACTGGCTCTTTaGATTGCATGGGAGCTGGGTGAGGCTTGTGACTGCTGGCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LVLLGVGVVGVRLAL*IAWELGEACDCWLS Trigger: GGAAAGCCAGCAGTCACAAGCCTCACCCAGCTCCCATGCAATCCAAAGAGCCAGTCTTACTCCCACCACCCCCACCCCCAACAACACTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS TCA 90 bp | ACAGCTCCGGTCTACAGCTCCCAGCCTGAGCGACACAGAAGACGGTaGTTTCCGCATTTCCATCTGAGGTACCGGCTTCATCTCACTGGT | + |
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Preference number: 5 (lower is better) Translates to: TAPVYSSQPERHRRR*FPHFHLRYRLHLTG Trigger: ACCAGTGAGATGAAGCCGGTACCTCAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521147.2 |
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| CDS TCA 90 bp | ACAGCTCCGGTCTACAGCTCCCAGCCTGAGCGACACAGAAGACGGTaGTTTCCGCATTTCCATCTGAGGTACCGGCTTCATCTCACTAGG | + |
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Preference number: 5 (lower is better) Translates to: TAPVYSSQPERHRRR*FPHFHLRYRLHLTR Trigger: CCTAGTGAGATGAAGCCGGTACCTCAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670695.1 |
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| CDS TCA 90 bp | CCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCCTaGGCGACACAGAAGACGGTGATTTCCGCATTTCCATCTGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: PRWPNRNSSGLQLPA*ATQKTVISAFPSEV Trigger: TACCTCAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000521147.2 ENST00000670695.1 |
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| CDS CCA 90 bp | TATTATTTTAACTCCAGTGGGACAAGAATCCAGACACAGTTTAGTTaGATGCTTTGCTTCAGTGTCTGTCACAGACTGCGATCAAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: YYFNSSGTRIQTQFS*MLCFSVCHRLRSRA Trigger: AGCCCTTGATCGCAGTCTGTGACAGACACTGAAGCAAAGCATCCAACTAAACTGTGTCTGGATTCTTGTCCCACTGGAGTTAAAATAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CCA 90 bp | ATTGCTTTGCTGCTGTCTGGGTCCCACCTGGTTTTCAATTTTGCTTaGGTCTTTCTCCTCCTCTCTCAAATCTACACTTTAATATTTCTT | + |
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Preference number: 5 (lower is better) Translates to: IALLLSGSHLVFNFA*VFLLLSQIYTLIFL Trigger: AAGAAATATTAAAGTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAGCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS CCA 72 bp | CTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCATGCGCGAGCCGAAGCAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: LTRECQTVGAGQ*VRAPCASRSRA Trigger: CGCCCTGCTTCGGCTCGCGCATGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670695.1 |
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| CDS CAA 72 bp | GCGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATaGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: ARTMREPKQGEA*PHLGSARGQGV Trigger: AACTCCCTGACCCCTTGCACTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCATGGTGCGCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670695.1 |
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| CDS GCA 72 bp | CGTGCACTGTGCGCCAGCCGAAGCAGGGCGAGGCATTaGCTCACTTGGGAAGCGCAAAGGGTCAGGGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: RALCASRSRARH*LTWEAQRVREF Trigger: GAACTCCCTGACCCTTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTGGCGCACAGTGCACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000669950.1 ENST00000676364.1 |
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| CDS GCA 72 bp | GAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTaGTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACT | + |
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Preference number: 6 (lower is better) Translates to: EAGGGAPAIAQA*LGKQSSREART Trigger: AGTTCGAGCTTCCCTGCTGCTTTGTTTACCTAAGCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654852.2 |
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| CDS CAA 72 bp | ATGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACTaGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: MREPKQGEALPH*GSARGQGVPFP Trigger: CGGAAAGGGAACTCCCTGACCCCTTGCACTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670695.1 |
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| CDS TCA 72 bp | GAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTaGTTAGGTAAACAAAGCAGCCAGGAAGCTCCAACT | + |
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Preference number: 6 (lower is better) Translates to: EAGGGAPAIAQA*LGKQSSQEAPT Trigger: AGTTGGAGCTTCCTGGCTGCTTTGTTTACCTAATCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000676127.1 |
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| CDS CCA 72 bp | AGGGTTGCCAGAGGCACTGGGAAAAGCCTTCACAGCTaGGAGGCGGGTAGCCTGGTTCAAGTTCTCAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: RVARGTGKSLHS*EAGSLVQVLSP Trigger: AGGGCTGAGAACTTGAACCAGGCTACCCGCCTCCCAGCTGTGAAGGCTTTTCCCAGTGCCTCTGGCAACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CAA 72 bp | GCCCTGCTTGCCCACTGCCTGGAAACAGACTTAGTGTaGTTGGGGGTGGGGGTGGTGGGAGTAAGACTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ALLAHCLETDLV*LGVGVVGVRLA Trigger: AGCCAGTCTTACTCCCACCACCCCCACCCCCAACAACACTAAGTCTGTTTCCAGGCAGTGGGCAAGCAGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CCA 72 bp | TTAGGTAAACAAAGCAGCCAGGAAGCTCCAACTGGGTaGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LGKQSSQEAPTG*SPPQLKEACLP Trigger: AGGCAGGCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTGGAGCTTCCTGGCTGCTTTGTTTACCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000676127.1 |
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| CDS CCA 72 bp | GGGGTGGTGGGAGTAAGACTGGCTCTTTGGATTGCATaGGAGCTGGGTGAGGCTTGTGACTGCTGGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: GVVGVRLALWIA*ELGEACDCWLS Trigger: GGAAAGCCAGCAGTCACAAGCCTCACCCAGCTCCCATGCAATCCAAAGAGCCAGTCTTACTCCCACCACCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS TCA 72 bp | GGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAGGGGTaGCAGACGGCACCTGGAAAATCGGGTCACTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: GQGVPFPSQRKG*QTAPGKSGHSH Trigger: GTGGGAGTGACCCGATTTTCCAGGTGCCGTCTGTCACCCCTTTCTTTGACTGGGAAAGGGAACTCCCTGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669950.1 |
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| CDS GCA 72 bp | GAGGCGGGTAGCCTGGTTCAAGTTCTCAGCCCTGCTTaGCCACTGCCTGGAAACAGACTTAGTGTTGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: EAGSLVQVLSPA*PLPGNRLSVVG Trigger: CCCAACAACACTAAGTCTGTTTCCAGGCAGTGGGCAAGCAGGGCTGAGAACTTGAACCAGGCTACCCGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS TCA 72 bp | CCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCCTaGGCGACACAGAAGACGGTGATTTCCGCATTTCCA | + |
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Preference number: 6 (lower is better) Translates to: PNRNSSGLQLPA*ATQKTVISAFP Trigger: TGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000670695.1 |
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| CDS CAA 72 bp | TTGAAGCTCACAGGGTTGTGGGCTGGGCTTGCTTCCTaGCAGGCTGTTGAGCTGAGGGCCTTAGTTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: LKLTGLWAGLAS*QAVELRALVSC Trigger: GCAAGAAACTAAGGCCCTCAGCTCAACAGCCTGCAAGGAAGCAAGCCCAGCCCACAACCCTGTGAGCTTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CAA 90 bp | AGGGCTAGGCTGTCATCTGGAAGCCTGACTGAAGAAGAATCCACTTaGAAGCTCACAGGGTTGTGGGCTGGGCTTGCTTCCTTGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RARLSSGSLTEEEST*KLTGLWAGLASLQA Trigger: AGCCTGCAAGGAAGCAAGCCCAGCCCACAACCCTGTGAGCTTCAAAGTGGATTCTTCTTCAGTCAGGCTTCCAGATGACAGCCTAGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CAA 90 bp | AAGTTCTCAGCCCTGCTTGCCCACTGCCTGGAAACAGACTTAGTGTaGTTGGGGGTGGGGGTGGTGGGAGTAAGACTGGCTCTTTGGATT | + |
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Preference number: 6 (lower is better) Translates to: KFSALLAHCLETDLV*LGVGVVGVRLALWI Trigger: AATCCAAAGAGCCAGTCTTACTCCCACCACCCCCACCCCCAACAACACTAAGTCTGTTTCCAGGCAGTGGGCAAGCAGGGCTGAGAACTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS TCA 72 bp | GTCTACAGCTCCCAGCCTGAGCGACACAGAAGACGGTaGTTTCCGCATTTCCATCTGAGGTACCGGCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: VYSSQPERHRRR*FPHFHLRYRLH Trigger: ATGAAGCCGGTACCTCAGATGGAAATGCGGAAATCACCGTCTTCTGTGTCGCTCAGGCTGGGAGCTGTAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000521147.2 ENST00000670695.1 |
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| CDS TCA 72 bp | GCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTaGGGTACCGGGTTCATCTCACTGGTTCAGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: ATQKTGDFCISI*GTGFISLVQRV Trigger: GACCCTCTGAACCAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000675897.1 |
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| CDS TCA 72 bp | AGGGTTGTGGGCTGGGCTTGCTTCCTTGCAGGCTGTTaGGCTGAGGGCCTTAGTTTCTTGCTGACTATTATG | + |
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Preference number: 6 (lower is better) Translates to: RVVGWACFLAGC*AEGLSFLLTIM Trigger: CATAATAGTCAGCAAGAAACTAAGGCCCTCAGCTCAACAGCCTGCAAGGAAGCAAGCCCAGCCCACAACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CCA 72 bp | ACTGAAGAAGAATCCACTTTGAAGCTCACAGGGTTGTaGGCTGGGCTTGCTTCCTTGCAGGCTGTTGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: TEEESTLKLTGL*AGLASLQAVEL Trigger: CAGCTCAACAGCCTGCAAGGAAGCAAGCCCAGCCCACAACCCTGTGAGCTTCAAAGTGGATTCTTCTTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CAA 72 bp | CTGACTGAAGAAGAATCCACTTTGAAGCTCACAGGGTaGTGGGCTGGGCTTGCTTCCTTGCAGGCTGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: LTEEESTLKLTG*WAGLASLQAVE Trigger: CTCAACAGCCTGCAAGGAAGCAAGCCCAGCCCACAACCCTGTGAGCTTCAAAGTGGATTCTTCTTCAGTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS CAA 72 bp | CTGTCATCTGGAAGCCTGACTGAAGAAGAATCCACTTaGAAGCTCACAGGGTTGTGGGCTGGGCTTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSSGSLTEEEST*KLTGLWAGLAS Trigger: GGAAGCAAGCCCAGCCCACAACCCTGTGAGCTTCAAAGTGGATTCTTCTTCAGTCAGGCTTCCAGATGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000675539.1 ENST00000676364.1 |
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| CDS GCA 72 bp | AATTTAGAGAGCCAAGTGAAATACAGGGGTAAAGGATaGAGAGGGAAAAGCCCTGGGAACTCGCTGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: NLESQVKYRGKG*RGKSPGNSLGL Trigger: GAGACCCAGCGAGTTCCCAGGGCTTTTCCCTCTGCATCCTTTACCCCTGTATTTCACTTGGCTCTCTAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CCA 72 bp | ATGCTTCCATTGCTTTGCTGCTGTCTGGGTCCCACCTaGTTTTCAATTTTGCTTGGGTCTTTCTCCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: MLPLLCCCLGPT*FSILLGSFSSS Trigger: AGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAGCAATGGAAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS GCA 72 bp | TTTGCTGCTGTCTGGGTCCCACCTGGTTTTCAATTTTaGTTGGGTCTTTCTCCTCCTCTCTCAAATCTACAC | + |
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Preference number: 6 (lower is better) Translates to: FAAVWVPPGFQF*LGLSPPLSNLH Trigger: GTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS CAA 72 bp | GCTGCTGTCTGGGTCCCACCTGGTTTTCAATTTTGCTaGGGTCTTTCTCCTCCTCTCTCAAATCTACACTTT | + |
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Preference number: 6 (lower is better) Translates to: AAVWVPPGFQFC*GLSPPLSNLHF Trigger: AAAGTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS CAA 72 bp | CTTTGCTGCTGTCTGGGTCCCACCTGGTTTTCAATTTaGCTTGGGTCTTTCTCCTCCTCTCTCAAATCTACA | + |
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Preference number: 6 (lower is better) Translates to: LCCCLGPTWFSI*LGSFSSSLKST Trigger: TGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS TCA 72 bp | TATGTTCTTCTGGATTCCCTGCTGGTATGCTGGAGCTaGGTCAATTTAGAGAGCCAAGTGAAATACAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: YVLLDSLLVCWS*VNLESQVKYRG Trigger: ACCCCTGTATTTCACTTGGCTCTCTAAATTGACTCAGCTCCAGCATACCAGCAGGGAATCCAGAAGAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CCA 72 bp | CTATCCTGTGGGATGACTCTTAGAGTTATGTTCTTCTaGATTCCCTGCTGGTATGCTGGAGCTGAGTCAATT | + |
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Preference number: 6 (lower is better) Translates to: LSCGMTLRVMFF*IPCWYAGAESI Trigger: AATTGACTCAGCTCCAGCATACCAGCAGGGAATCCAGAAGAACATAACTCTAAGAGTCATCCCACAGGATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS CAA 90 bp | TTCTTGATAGTGCCAATGACTCTCCAGCCAAACATAACCTGTTTCTaGCCAGGTGTTGTTCTGCTATCACAGGCTATGTTCCAGAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: FLIVPMTLQPNITCF*PGVVLLSQAMFQKS Trigger: GCTTTTCTGGAACATAGCCTGTGATAGCAGAACAACACCTGGCAAGAAACAGGTTATGTTTGGCTGGAGAGTCATTGGCACTATCAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS CAA 90 bp | CATTGCTTTGCTGCTGTCTGGGTCCCACCTGGTTTTCAATTTTGCTaGGGTCTTTCTCCTCCTCTCTCAAATCTACACTTTAATATTTCT | + |
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Preference number: 6 (lower is better) Translates to: HCFAAVWVPPGFQFC*GLSPPLSNLHFNIS Trigger: AGAAATATTAAAGTGTAGATTTGAGAGAGGAGGAGAAAGACCCAAGCAAAATTGAAAACCAGGTGGGACCCAGACAGCAGCAAAGCAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS TCA 72 bp | CATAGACAAAAGATGCATCTTCTCTATCCTGTGGGATaGCTCTTAGAGTTATGTTCTTCTGGATTCCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: HRQKMHLLYPVG*LLELCSSGFPA Trigger: AGCAGGGAATCCAGAAGAACATAACTCTAAGAGTCATCCCACAGGATAGAGAAGATGCATCTTTTGTCTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000675549.1 |
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| CDS GCA 72 bp | CTTATGTTTAGAATGGAAGCAGCAAATGTGTCCATCTaGAAACTCTGGAAATTCTTCCTGATTCCTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: LMFRMEAANVSI*KLWKFFLIPEF Trigger: AAATTCAGGAATCAGGAAGAATTTCCAGAGTTTGCAGATGGACACATTTGCTGCTTCCATTCTAAACATAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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| CDS CCA 72 bp | AGAATGGAAGCAGCAAATGTGTCCATCTGCAAACTCTaGAAATTCTTCCTGATTCCTGAATTTAAAGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: RMEAANVSICKL*KFFLIPEFKGN Trigger: ATTTCCTTTAAATTCAGGAATCAGGAAGAATTTCCAGAGTTTGCAGATGGACACATTTGCTGCTTCCATTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000504531.3 ENST00000521147.2 ENST00000522183.2 ENST00000523313.2 ENST00000654852.2 ENST00000669950.1 ENST00000670695.1 ENST00000675549.1 ENST00000675884.1 ENST00000675897.1 ENST00000676127.1 |
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