Pregenerated sensors for CASC6 (Homo sapiens)
Ensembl gene IDs: ENSG00000224944Ensembl transcript IDs: ENST00000437768.1, ENST00000655239.1, ENST00000656997.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACCAAGCTCAGTGTCTGGGGAGGGCCTGGTCTCTGCTTGCAAGGTaGGGACTTCGTGTGTTCTCCGGAGAAGATGAACGCTTTCATCTC | + |
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Preference number: 5 (lower is better) Translates to: HQAQCLGRAWSLLAR*GLRVFSGEDERFHL Trigger: GAGATGAAAGCGTTCATCTTCTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS GCA 90 bp | AATCCAAGTGCCACCAAGCTCAGTGTCTGGGGAGGGCCTGGTCTCTaGTTGCAAGGTGAGGACTTCGTGTGTTCTCCGGAGAAGATGAAC | + |
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Preference number: 5 (lower is better) Translates to: NPSATKLSVWGGPGL*LQGEDFVCSPEKMN Trigger: GTTCATCTTCTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGGTGGCACTTGGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS TCA 90 bp | GTCTCTGCTTGCAAGGTGAGGACTTCGTGTGTTCTCCGGAGAAGATaGACGCTTTCATCTCGCCCAGCAGAAGAGCTAGAAGAACAAATA | + |
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Preference number: 5 (lower is better) Translates to: VSACKVRTSCVLRRR*TLSSRPAEELEEQI Trigger: TATTTGTTCTTCTAGCTCTTCTGCTGGGCGAGATGAAAGCGTTCATCTTCTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655239.1 |
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| CDS GCA 90 bp | CCCTCCATCCCAACATGTCCATCTGCCTTAGGATATAGGAAACACTaGTCCTTAAAAAGCCAGCAGAACTGTATGTATCTGAACCTTCGT | + |
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Preference number: 5 (lower is better) Translates to: PSIPTCPSALGYRKH*SLKSQQNCMYLNLR Trigger: ACGAAGGTTCAGATACATACAGTTCTGCTGGCTTTTTAAGGAGCAGTGTTTCCTATATCCTAAGGCAGATGGACATGTTGGGATGGAGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CCA 90 bp | GAGATATGTTACTTGAGCAGGTCAATGAATAGGTTCTCACAATTTTaGAGGCTGGAAGTCCAAAATCCAAGTGCCACCAAGCTCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: EICYLSRSMNRFSQF*RLEVQNPSATKLSV Trigger: GACACTGAGCTTGGTGGCACTTGGATTTTGGACTTCCAGCCTCCAAAATTGTGAGAACCTATTCATTGACCTGCTCAAGTAACATATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655239.1 |
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| CDS CCA 90 bp | TCTTCAATGTACAGGGTCAACATCTTGTTCAGGTCTACTGTATTGTaGGGAGGGTCATGGATGGCCTCTTTTTCTCATATTTCAGAATAC | + |
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Preference number: 5 (lower is better) Translates to: SSMYRVNILFRSTVL*GGSWMASFSHISEY Trigger: GTATTCTGAAATATGAGAAAAAGAGGCCATCCATGACCCTCCCCACAATACAGTAGACCTGAACAAGATGTTGACCCTGTACATTGAAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS CCA 90 bp | ACACTCATTGTTTTGGTTGTGATGAAGTTTAACATGTGTATACACTaGTTGCTGTTATCTTCAATGTACAGGGTCAACATCTTGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: TLIVLVVMKFNMCIH*LLLSSMYRVNILFR Trigger: CCTGAACAAGATGTTGACCCTGTACATTGAAGATAACAGCAACCAGTGTATACACATGTTAAACTTCATCACAACCAAAACAATGAGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS GCA 72 bp | GCCACCAAGCTCAGTGTCTGGGGAGGGCCTGGTCTCTaGTTGCAAGGTGAGGACTTCGTGTGTTCTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: ATKLSVWGGPGL*LQGEDFVCSPE Trigger: CTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS GCA 72 bp | CCAAGCTCAGTGTCTGGGGAGGGCCTGGTCTCTGCTTaGAAGGTGAGGACTTCGTGTGTTCTCCGGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PSSVSGEGLVSA*KVRTSCVLRRR Trigger: TCTTCTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS CAA 72 bp | ACCAAGCTCAGTGTCTGGGGAGGGCCTGGTCTCTGCTaGCAAGGTGAGGACTTCGTGTGTTCTCCGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: TKLSVWGGPGLC*QGEDFVCSPEK Trigger: CTTCTCCGGAGAACACACGAAGTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS CCA 72 bp | GAAGTCCAAAATCCAAGTGCCACCAAGCTCAGTGTCTaGGGAGGGCCTGGTCTCTGCTTGCAAGGTGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: EVQNPSATKLSV*GGPGLCLQGED Trigger: GTCCTCACCTTGCAAGCAGAGACCAGGCCCTCCCCAGACACTGAGCTTGGTGGCACTTGGATTTTGGACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000437768.1 ENST00000655239.1 |
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| CDS TCA 72 bp | TGCAAGGTGAGGACTTCGTGTGTTCTCCGGAGAAGATaGACGCTTTCATCTCGCCCAGCAGAAGAGCTAGAA | + |
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Preference number: 6 (lower is better) Translates to: CKVRTSCVLRRR*TLSSRPAEELE Trigger: TTCTAGCTCTTCTGCTGGGCGAGATGAAAGCGTTCATCTTCTCCGGAGAACACACGAAGTCCTCACCTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655239.1 |
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| CDS CAA 90 bp | GGGTCCATGTGTTCTCATTGTTCAGCTCCCACAAACATGCAGTGTTaGGTTTTCTGTTCCTGTGTTAATTTTCCGAGGATAATGGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: GSMCSHCSAPTNMQC*VFCSCVNFPRIMAS Trigger: GGAAGCCATTATCCTCGGAAAATTAACACAGGAACAGAAAACCAAACACTGCATGTTTGTGGGAGCTGAACAATGAGAACACATGGACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CCA 72 bp | TACTTGAGCAGGTCAATGAATAGGTTCTCACAATTTTaGAGGCTGGAAGTCCAAAATCCAAGTGCCACCAAG | + |
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Preference number: 6 (lower is better) Translates to: YLSRSMNRFSQF*RLEVQNPSATK Trigger: CTTGGTGGCACTTGGATTTTGGACTTCCAGCCTCCAAAATTGTGAGAACCTATTCATTGACCTGCTCAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655239.1 |
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| CDS CCA 72 bp | TACAGGGTCAACATCTTGTTCAGGTCTACTGTATTGTaGGGAGGGTCATGGATGGCCTCTTTTTCTCATATT | + |
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Preference number: 6 (lower is better) Translates to: YRVNILFRSTVL*GGSWMASFSHI Trigger: AATATGAGAAAAAGAGGCCATCCATGACCCTCCCCACAATACAGTAGACCTGAACAAGATGTTGACCCTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS GCA 72 bp | CCAACATGTCCATCTGCCTTAGGATATAGGAAACACTaGTCCTTAAAAAGCCAGCAGAACTGTATGTATCTG | + |
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Preference number: 6 (lower is better) Translates to: PTCPSALGYRKH*SLKSQQNCMYL Trigger: CAGATACATACAGTTCTGCTGGCTTTTTAAGGAGCAGTGTTTCCTATATCCTAAGGCAGATGGACATGTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CAA 72 bp | ACAATGAGAGGCAAGGGTGAAGGATTACAAAGGGGCTaGAGGAAACTTCTGGATGATGAATACACTCATTGT | + |
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Preference number: 6 (lower is better) Translates to: TMRGKGEGLQRG*RKLLDDEYTHC Trigger: ACAATGAGTGTATTCATCATCCAGAAGTTTCCTCAAGCCCCTTTGTAATCCTTCACCCTTGCCTCTCATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS CAA 90 bp | TTATCTTCAATGTACAGGGTCAACATCTTGTTCAGGTCTACTGTATaGTGGGGAGGGTCATGGATGGCCTCTTTTTCTCATATTTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LSSMYRVNILFRSTV*WGGSWMASFSHISE Trigger: TTCTGAAATATGAGAAAAAGAGGCCATCCATGACCCTCCCCACAATACAGTAGACCTGAACAAGATGTTGACCCTGTACATTGAAGATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS GCA 72 bp | AAAAAGCCAGCAGAACTGTATGTATCTGAACCTTCGTaGAACATTTATAGGCTCTGTCAGTTTCTCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: KKPAELYVSEPS*NIYRLCQFLFL Trigger: GAGAAAGAGAAACTGACAGAGCCTATAAATGTTGCACGAAGGTTCAGATACATACAGTTCTGCTGGCTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CCA 72 bp | ATCTTGTTCAGGTCTACTGTATTGTGGGGAGGGTCATaGATGGCCTCTTTTTCTCATATTTCAGAATACAAT | + |
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Preference number: 6 (lower is better) Translates to: ILFRSTVLWGGS*MASFSHISEYN Trigger: ATTGTATTCTGAAATATGAGAAAAAGAGGCCATCCATGACCCTCCCCACAATACAGTAGACCTGAACAAGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS CAA 72 bp | TGTTCTCATTGTTCAGCTCCCACAAACATGCAGTGTTaGGTTTTCTGTTCCTGTGTTAATTTTCCGAGGATA | + |
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Preference number: 6 (lower is better) Translates to: CSHCSAPTNMQC*VFCSCVNFPRI Trigger: TATCCTCGGAAAATTAACACAGGAACAGAAAACCAAACACTGCATGTTTGTGGGAGCTGAACAATGAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CAA 90 bp | CTCATTGTTTTGGTTGTGATGAAGTTTAACATGTGTATACACTGGTaGCTGTTATCTTCAATGTACAGGGTCAACATCTTGTTCAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LIVLVVMKFNMCIHW*LLSSMYRVNILFRS Trigger: AGACCTGAACAAGATGTTGACCCTGTACATTGAAGATAACAGCAACCAGTGTATACACATGTTAAACTTCATCACAACCAAAACAATGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS TCA 72 bp | TTGCAGTCTTATCTGATTACGTGTCTTGGAGGATTATaGAGGCTTAATAATTTGGACTGGATTAACCGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LQSYLITCLGGL*RLNNLDWINRE Trigger: TTCTCGGTTAATCCAGTCCAAATTATTAAGCCTTCATAATCCTCCAAGACACGTAATCAGATAAGACTGCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437768.1 |
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| CDS CAA 72 bp | TTGGTTGTGATGAAGTTTAACATGTGTATACACTGGTaGCTGTTATCTTCAATGTACAGGGTCAACATCTTG | + |
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Preference number: 6 (lower is better) Translates to: LVVMKFNMCIHW*LLSSMYRVNIL Trigger: CAAGATGTTGACCCTGTACATTGAAGATAACAGCAACCAGTGTATACACATGTTAAACTTCATCACAACCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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| CDS TCA 72 bp | ATGTGCAGAATGGCTATATTTGCATTAACCCAAGACTaGAAACAATCAAATGTCCTTAAACAGGTGAACATA | + |
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Preference number: 6 (lower is better) Translates to: MCRMAIFALTQD*KQSNVLKQVNI Trigger: TATGTTCACCTGTTTAAGGACATTTGATTGTTTTCAGTCTTGGGTTAATGCAAATATAGCCATTCTGCACAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656997.1 |
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