RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASC16 (Homo sapiens)

Ensembl gene IDs: ENSG00000249231

Ensembl transcript IDs: ENST00000510238.8, ENST00000563844.1, ENST00000565755.1, ENST00000652959.1, ENST00000671536.1

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GCCCCTGGTGTTGTCCACAAAGACCACCGGCTGAACAATGAAAGCTaGAGACCCAGTACTTTCTTCGCAAATGGGTGGGGGTCAGTCCAC +
Preference number: 5 (lower is better)
Translates to: APGVVHKDHRLNNES*RPSTFFANGWGSVH
Trigger: GTGGACTGACCCCCACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000510238.8
ENST00000565755.1
ENST00000652959.1
ENST00000671536.1
CDS TCA 90 bp AATGTGGAAGTTGTAGCGCTGCCCCTGAGCACAGTTCTCAGAGTGTaGGTGGAGGGAGAGAGTAAGGTAGGTGTCAAAGAGGACCTGCAG +
Preference number: 5 (lower is better)
Translates to: NVEVVALPLSTVLRV*VEGESKVGVKEDLQ
Trigger: CTGCAGGTCCTCTTTGACACCTACCTTACTCTCTCCCTCCACTCACACTCTGAGAACTGTGCTCAGGGGCAGCGCTACAACTTCCACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000510238.8
ENST00000671536.1
CDS TCA 90 bp CTTCAGCAGGAGGGGCCCCTGGTGTTGTCCACAAAGACCACCGGCTaGACAATGAAAGCTGAAGACCCAGTACTTTCTTCGCAAATGGGT +
Preference number: 5 (lower is better)
Translates to: LQQEGPLVLSTKTTG*TMKAEDPVLSSQMG
Trigger: ACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGGGCCCCTCCTGCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000510238.8
ENST00000565755.1
ENST00000652959.1
ENST00000671536.1
CDS TCA 90 bp AGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATTaGCTCATCAGATGTTCAGTTCCAGGATCACAGCCTAGGGTGCAT +
Preference number: 5 (lower is better)
Translates to: RSHGSGRRALLRALY*LIRCSVPGSQPRVH
Trigger: ATGCACCCTAGGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 90 bp CAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTaGGATGCAGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTG +
Preference number: 5 (lower is better)
Translates to: QSEGSVPLLHMFSAT*DAGLMVQGEEHYSV
Trigger: CACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CCA 90 bp TTCCGAGAAGATCCAATGGAGGACTTCAAAGTCCTGACTCCACTGTaGTGGGATGTGAACACCACTAGAGGATGGTGCTGTCTTGGTTTC +
Preference number: 5 (lower is better)
Translates to: FREDPMEDFKVLTPL*WDVNTTRGWCCLGF
Trigger: GAAACCAAGACAGCACCATCCTCTAGTGGTGTTCACATCCCACCACAGTGGAGTCAGGACTTTGAAGTCCTCCATTGGATCTTCTCGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000510238.8
ENST00000671536.1
CDS TCA 90 bp GCTAAGAGACAGCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAATCTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: AKRQLTVPCTHVAGF*TMTTSRPDLQNLSP
Trigger: TGGAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGCTGTCTCTTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000671536.1
CDS GCA 90 bp AGGGTAGCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATGCTaGAGCCATAAATCTGGAGAGGTCATTAGAATTACGAACTCTGGT +
Preference number: 5 (lower is better)
Translates to: RVAHYMPLPTPSWEC*SHKSGEVIRITNSG
Trigger: ACCAGAGTTCGTAATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGCTACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565755.1
CDS GCA 90 bp CTGAGGGTAGCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATaGTGCAGCCATAAATCTGGAGAGGTCATTAGAATTACGAACTCT +
Preference number: 5 (lower is better)
Translates to: LRVAHYMPLPTPSWE*CSHKSGEVIRITNS
Trigger: AGAGTTCGTAATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGCTACCCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565755.1
CDS GCA 90 bp AAAGTCTTTATTTGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTaGTCCACATGTTTTCTGCAACCTGAGATGCAGGTCTCATGGTTC +
Preference number: 5 (lower is better)
Translates to: KVFICCCSKVKALYL*STCFLQPEMQVSWF
Trigger: GAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 90 bp ATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTGCAGCAAAGTaGAGGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTGAGA +
Preference number: 5 (lower is better)
Translates to: IQWRTSKSLFVAAAK*RLCTSAPHVFCNLR
Trigger: TCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 90 bp ACAGAACATATTCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAATCTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: TEHILTVPCTHVAGF*TMTTSRPDLQNLSP
Trigger: TGGAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS GCA 90 bp TTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTaGAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTTCTG +
Preference number: 5 (lower is better)
Translates to: FREDPMEDFKVFICC*SKVKALYLCSTCFL
Trigger: CAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CCA 90 bp AGTGTCCACAGAACATATTCTTACAGTTCCATGTACCCACGTGGCTaGATTCTGAACAATGACCACTTCCAGACCGGACTTACAAAATCT +
Preference number: 5 (lower is better)
Translates to: SVHRTYSYSSMYPRG*ILNNDHFQTGLTKS
Trigger: AGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCTGTGGACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS GCA 90 bp ATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTaGTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTT +
Preference number: 5 (lower is better)
Translates to: IFREDPMEDFKVFIC*CSKVKALYLCSTCF
Trigger: AAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 90 bp GATACAACGAAATATGGTAAAGGTTTCCACACAGCGTTCTGTTCTTaGAATAATCACTCAAGCCCTGTAAAGACCAATGTGGAAGTTGTA +
Preference number: 5 (lower is better)
Translates to: DTTKYGKGFHTAFCS*NNHSSPVKTNVEVV
Trigger: TACAACTTCCACATTGGTCTTTACAGGGCTTGAGTGATTATTTCAAGAACAGAACGCTGTGTGGAAACCTTTACCATATTTCGTTGTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000510238.8
ENST00000671536.1
CDS CCA 90 bp CTATGTAGATGTAATGATGAAGAGCATACATTTAGCAAACAGACTTaGGTAAAAATTCCAACTTCACCACTTAACTGGTTAGGAGATCTT +
Preference number: 5 (lower is better)
Translates to: LCRCNDEEHTFSKQT*VKIPTSPLNWLGDL
Trigger: AAGATCTCCTAACCAGTTAAGTGGTGAAGTTGGAATTTTTACCCAAGTCTGTTTGCTAAATGTATGCTCTTCATCATTACATCTACATAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp GGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTaGGATGCAGGTCTCATGGTTCAGGGAGAAGAGCAC +
Preference number: 6 (lower is better)
Translates to: GSVPLLHMFSAT*DAGLMVQGEEH
Trigger: GTGCTCTTCTCCCTGAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp GTTGTCCACAAAGACCACCGGCTGAACAATGAAAGCTaGAGACCCAGTACTTTCTTCGCAAATGGGTGGGGG +
Preference number: 6 (lower is better)
Translates to: VVHKDHRLNNES*RPSTFFANGWG
Trigger: CCCCCACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000510238.8
ENST00000565755.1
ENST00000652959.1
ENST00000671536.1
CDS TCA 72 bp GGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATTaGCTCATCAGATGTTCAGTTCCAGGATCACAGCCT +
Preference number: 6 (lower is better)
Translates to: GSGRRALLRALY*LIRCSVPGSQP
Trigger: AGGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS GCA 72 bp CAGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTaGCCTGTATTGACTCATCAGATGTTCAGTTCCAGG +
Preference number: 6 (lower is better)
Translates to: QVSWFREKSTTP*PVLTHQMFSSR
Trigger: CCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CAA 72 bp TGGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATaGACTCATCAGATGTTCAGTTCCAGGATCACAGCC +
Preference number: 6 (lower is better)
Translates to: WFREKSTTPCPV*THQMFSSRITA
Trigger: GGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp CCCTGGTGTTGTCCACAAAGACCACCGGCTGAACAATaGAAGCTGAAGACCCAGTACTTTCTTCGCAAATGG +
Preference number: 6 (lower is better)
Translates to: PWCCPQRPPAEQ*KLKTQYFLRKW
Trigger: CCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000510238.8
ENST00000565755.1
ENST00000652959.1
ENST00000671536.1
CDS TCA 72 bp CAGTTCCATGTACCCACGTGGCTGGATTCTGAACAATaGCCACTTCCAGACCGGACTTACAAAATCTCTCTC +
Preference number: 6 (lower is better)
Translates to: QFHVPTWLDSEQ*PLPDRTYKISL
Trigger: GAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000510238.8
ENST00000563844.1
ENST00000652959.1
ENST00000671536.1
CDS TCA 72 bp TTCCGCAGGGATATGCCCGATTTCAGTTTCCCATGTTaGAATAGCCTTACAGTTCCATGTACCCACGTGGCT +
Preference number: 6 (lower is better)
Translates to: FRRDMPDFSFPC*NSLTVPCTHVA
Trigger: AGCCACGTGGGTACATGGAACTGTAAGGCTATTTCAACATGGGAAACTGAAATCGGGCATATCCCTGCGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000510238.8
CDS GCA 72 bp ATTTGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTaGTCCACATGTTTTCTGCAACCTGAGATGCAGGTC +
Preference number: 6 (lower is better)
Translates to: ICCCSKVKALYL*STCFLQPEMQV
Trigger: GACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CAA 90 bp CCTCATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTaGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATG +
Preference number: 6 (lower is better)
Translates to: PHLPRRSNGGLQSLY*LLQQSEGSVPLLHM
Trigger: CATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp AGCCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT +
Preference number: 6 (lower is better)
Translates to: SLTVPCTHVAGF*TMTTSRPDLQN
Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000510238.8
CDS TCA 72 bp CAGCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT +
Preference number: 6 (lower is better)
Translates to: QLTVPCTHVAGF*TMTTSRPDLQN
Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000671536.1
CDS GCA 72 bp GCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATaGTGCAGCCATAAATCTGGAGAGGTCATTAGAATT +
Preference number: 6 (lower is better)
Translates to: AHYMPLPTPSWE*CSHKSGEVIRI
Trigger: AATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565755.1
CDS GCA 72 bp GATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTaGAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACA +
Preference number: 6 (lower is better)
Translates to: DPMEDFKVFICC*SKVKALYLCST
Trigger: TGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS GCA 72 bp GAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTaGTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: EDPMEDFKVFIC*CSKVKALYLCS
Trigger: GGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CCA 72 bp AGAACATATTCTTACAGTTCCATGTACCCACGTGGCTaGATTCTGAACAATGACCACTTCCAGACCGGACTT +
Preference number: 6 (lower is better)
Translates to: RTYSYSSMYPRG*ILNNDHFQTGL
Trigger: AAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CAA 72 bp CCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTaGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTG +
Preference number: 6 (lower is better)
Translates to: PRRSNGGLQSLY*LLQQSEGSVPL
Trigger: CAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CAA 90 bp CATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTaGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTT +
Preference number: 6 (lower is better)
Translates to: HLPRRSNGGLQSLYL*LQQSEGSVPLLHMF
Trigger: AAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp AGGACTTCAAAGTCTTTATTTGTTGCTGCAGCAAAGTaGAGGCTCTGTACCTCTGCTCCACATGTTTTCTGC +
Preference number: 6 (lower is better)
Translates to: RTSKSLFVAAAK*RLCTSAPHVFC
Trigger: GCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp ATTCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT +
Preference number: 6 (lower is better)
Translates to: ILTVPCTHVAGF*TMTTSRPDLQN
Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CAA 72 bp AGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTaGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTC +
Preference number: 6 (lower is better)
Translates to: RRSNGGLQSLYL*LQQSEGSVPLL
Trigger: GAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CCA 72 bp ACTCTCTCATTTCCCTCATCTTCCGAGAAGATCCAATaGAGGACTTCAAAGTCTTTATTTGTTGCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: TLSFPSSSEKIQ*RTSKSLFVAAA
Trigger: TGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATGAGGGAAATGAGAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS TCA 72 bp AAATATGGTAAAGGTTTCCACACAGCGTTCTGTTCTTaGAATAATCACTCAAGCCCTGTAAAGACCAATGTG +
Preference number: 6 (lower is better)
Translates to: KYGKGFHTAFCS*NNHSSPVKTNV
Trigger: CACATTGGTCTTTACAGGGCTTGAGTGATTATTTCAAGAACAGAACGCTGTGTGGAAACCTTTACCATATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000510238.8
ENST00000671536.1
CDS CCA 72 bp TTTTCATTTTGCACTGGGCACTACAAGTTATGTAGCTaGTCCTATGTAGATGTAATGATGAAGAGCATACAT +
Preference number: 6 (lower is better)
Translates to: FSFCTGHYKLCS*SYVDVMMKSIH
Trigger: ATGTATGCTCTTCATCATTACATCTACATAGGACCAGCTACATAACTTGTAGTGCCCAGTGCAAAATGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1
CDS CCA 72 bp TGTAATGATGAAGAGCATACATTTAGCAAACAGACTTaGGTAAAAATTCCAACTTCACCACTTAACTGGTTA +
Preference number: 6 (lower is better)
Translates to: CNDEEHTFSKQT*VKIPTSPLNWL
Trigger: TAACCAGTTAAGTGGTGAAGTTGGAATTTTTACCCAAGTCTGTTTGCTAAATGTATGCTCTTCATCATTACA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000563844.1
ENST00000652959.1