Pregenerated sensors for CASC16 (Homo sapiens)
Ensembl gene IDs: ENSG00000249231Ensembl transcript IDs: ENST00000510238.8, ENST00000563844.1, ENST00000565755.1, ENST00000652959.1, ENST00000671536.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCCCTGGTGTTGTCCACAAAGACCACCGGCTGAACAATGAAAGCTaGAGACCCAGTACTTTCTTCGCAAATGGGTGGGGGTCAGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: APGVVHKDHRLNNES*RPSTFFANGWGSVH Trigger: GTGGACTGACCCCCACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000510238.8 ENST00000565755.1 ENST00000652959.1 ENST00000671536.1 |
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| CDS TCA 90 bp | AATGTGGAAGTTGTAGCGCTGCCCCTGAGCACAGTTCTCAGAGTGTaGGTGGAGGGAGAGAGTAAGGTAGGTGTCAAAGAGGACCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: NVEVVALPLSTVLRV*VEGESKVGVKEDLQ Trigger: CTGCAGGTCCTCTTTGACACCTACCTTACTCTCTCCCTCCACTCACACTCTGAGAACTGTGCTCAGGGGCAGCGCTACAACTTCCACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000510238.8 ENST00000671536.1 |
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| CDS TCA 90 bp | CTTCAGCAGGAGGGGCCCCTGGTGTTGTCCACAAAGACCACCGGCTaGACAATGAAAGCTGAAGACCCAGTACTTTCTTCGCAAATGGGT | + |
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Preference number: 5 (lower is better) Translates to: LQQEGPLVLSTKTTG*TMKAEDPVLSSQMG Trigger: ACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGGGCCCCTCCTGCTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000510238.8 ENST00000565755.1 ENST00000652959.1 ENST00000671536.1 |
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| CDS TCA 90 bp | AGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATTaGCTCATCAGATGTTCAGTTCCAGGATCACAGCCTAGGGTGCAT | + |
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Preference number: 5 (lower is better) Translates to: RSHGSGRRALLRALY*LIRCSVPGSQPRVH Trigger: ATGCACCCTAGGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 90 bp | CAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTaGGATGCAGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: QSEGSVPLLHMFSAT*DAGLMVQGEEHYSV Trigger: CACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CCA 90 bp | TTCCGAGAAGATCCAATGGAGGACTTCAAAGTCCTGACTCCACTGTaGTGGGATGTGAACACCACTAGAGGATGGTGCTGTCTTGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: FREDPMEDFKVLTPL*WDVNTTRGWCCLGF Trigger: GAAACCAAGACAGCACCATCCTCTAGTGGTGTTCACATCCCACCACAGTGGAGTCAGGACTTTGAAGTCCTCCATTGGATCTTCTCGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000510238.8 ENST00000671536.1 |
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| CDS TCA 90 bp | GCTAAGAGACAGCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAATCTCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: AKRQLTVPCTHVAGF*TMTTSRPDLQNLSP Trigger: TGGAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGCTGTCTCTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671536.1 |
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| CDS GCA 90 bp | AGGGTAGCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATGCTaGAGCCATAAATCTGGAGAGGTCATTAGAATTACGAACTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: RVAHYMPLPTPSWEC*SHKSGEVIRITNSG Trigger: ACCAGAGTTCGTAATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGCTACCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000565755.1 |
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| CDS GCA 90 bp | CTGAGGGTAGCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATaGTGCAGCCATAAATCTGGAGAGGTCATTAGAATTACGAACTCT | + |
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Preference number: 5 (lower is better) Translates to: LRVAHYMPLPTPSWE*CSHKSGEVIRITNS Trigger: AGAGTTCGTAATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGCTACCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000565755.1 |
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| CDS GCA 90 bp | AAAGTCTTTATTTGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTaGTCCACATGTTTTCTGCAACCTGAGATGCAGGTCTCATGGTTC | + |
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Preference number: 5 (lower is better) Translates to: KVFICCCSKVKALYL*STCFLQPEMQVSWF Trigger: GAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 90 bp | ATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTGCAGCAAAGTaGAGGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTGAGA | + |
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Preference number: 5 (lower is better) Translates to: IQWRTSKSLFVAAAK*RLCTSAPHVFCNLR Trigger: TCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 90 bp | ACAGAACATATTCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAATCTCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: TEHILTVPCTHVAGF*TMTTSRPDLQNLSP Trigger: TGGAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS GCA 90 bp | TTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTaGAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: FREDPMEDFKVFICC*SKVKALYLCSTCFL Trigger: CAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CCA 90 bp | AGTGTCCACAGAACATATTCTTACAGTTCCATGTACCCACGTGGCTaGATTCTGAACAATGACCACTTCCAGACCGGACTTACAAAATCT | + |
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Preference number: 5 (lower is better) Translates to: SVHRTYSYSSMYPRG*ILNNDHFQTGLTKS Trigger: AGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCTGTGGACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS GCA 90 bp | ATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTaGTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTTT | + |
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Preference number: 5 (lower is better) Translates to: IFREDPMEDFKVFIC*CSKVKALYLCSTCF Trigger: AAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 90 bp | GATACAACGAAATATGGTAAAGGTTTCCACACAGCGTTCTGTTCTTaGAATAATCACTCAAGCCCTGTAAAGACCAATGTGGAAGTTGTA | + |
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Preference number: 5 (lower is better) Translates to: DTTKYGKGFHTAFCS*NNHSSPVKTNVEVV Trigger: TACAACTTCCACATTGGTCTTTACAGGGCTTGAGTGATTATTTCAAGAACAGAACGCTGTGTGGAAACCTTTACCATATTTCGTTGTATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000510238.8 ENST00000671536.1 |
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| CDS CCA 90 bp | CTATGTAGATGTAATGATGAAGAGCATACATTTAGCAAACAGACTTaGGTAAAAATTCCAACTTCACCACTTAACTGGTTAGGAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: LCRCNDEEHTFSKQT*VKIPTSPLNWLGDL Trigger: AAGATCTCCTAACCAGTTAAGTGGTGAAGTTGGAATTTTTACCCAAGTCTGTTTGCTAAATGTATGCTCTTCATCATTACATCTACATAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | GGCTCTGTACCTCTGCTCCACATGTTTTCTGCAACCTaGGATGCAGGTCTCATGGTTCAGGGAGAAGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: GSVPLLHMFSAT*DAGLMVQGEEH Trigger: GTGCTCTTCTCCCTGAACCATGAGACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | GTTGTCCACAAAGACCACCGGCTGAACAATGAAAGCTaGAGACCCAGTACTTTCTTCGCAAATGGGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VVHKDHRLNNES*RPSTFFANGWG Trigger: CCCCCACCCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000510238.8 ENST00000565755.1 ENST00000652959.1 ENST00000671536.1 |
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| CDS TCA 72 bp | GGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATTaGCTCATCAGATGTTCAGTTCCAGGATCACAGCCT | + |
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Preference number: 6 (lower is better) Translates to: GSGRRALLRALY*LIRCSVPGSQP Trigger: AGGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS GCA 72 bp | CAGGTCTCATGGTTCAGGGAGAAGAGCACTACTCCGTaGCCTGTATTGACTCATCAGATGTTCAGTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: QVSWFREKSTTP*PVLTHQMFSSR Trigger: CCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCATGAGACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CAA 72 bp | TGGTTCAGGGAGAAGAGCACTACTCCGTGCCCTGTATaGACTCATCAGATGTTCAGTTCCAGGATCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: WFREKSTTPCPV*THQMFSSRITA Trigger: GGCTGTGATCCTGGAACTGAACATCTGATGAGTCAATACAGGGCACGGAGTAGTGCTCTTCTCCCTGAACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | CCCTGGTGTTGTCCACAAAGACCACCGGCTGAACAATaGAAGCTGAAGACCCAGTACTTTCTTCGCAAATGG | + |
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Preference number: 6 (lower is better) Translates to: PWCCPQRPPAEQ*KLKTQYFLRKW Trigger: CCATTTGCGAAGAAAGTACTGGGTCTTCAGCTTTCATTGTTCAGCCGGTGGTCTTTGTGGACAACACCAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000510238.8 ENST00000565755.1 ENST00000652959.1 ENST00000671536.1 |
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| CDS TCA 72 bp | CAGTTCCATGTACCCACGTGGCTGGATTCTGAACAATaGCCACTTCCAGACCGGACTTACAAAATCTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: QFHVPTWLDSEQ*PLPDRTYKISL Trigger: GAGAGAGATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000510238.8 ENST00000563844.1 ENST00000652959.1 ENST00000671536.1 |
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| CDS TCA 72 bp | TTCCGCAGGGATATGCCCGATTTCAGTTTCCCATGTTaGAATAGCCTTACAGTTCCATGTACCCACGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: FRRDMPDFSFPC*NSLTVPCTHVA Trigger: AGCCACGTGGGTACATGGAACTGTAAGGCTATTTCAACATGGGAAACTGAAATCGGGCATATCCCTGCGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510238.8 |
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| CDS GCA 72 bp | ATTTGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTaGTCCACATGTTTTCTGCAACCTGAGATGCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: ICCCSKVKALYL*STCFLQPEMQV Trigger: GACCTGCATCTCAGGTTGCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CAA 90 bp | CCTCATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTaGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATG | + |
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Preference number: 6 (lower is better) Translates to: PHLPRRSNGGLQSLY*LLQQSEGSVPLLHM Trigger: CATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | AGCCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: SLTVPCTHVAGF*TMTTSRPDLQN Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510238.8 |
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| CDS TCA 72 bp | CAGCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: QLTVPCTHVAGF*TMTTSRPDLQN Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671536.1 |
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| CDS GCA 72 bp | GCTCATTATATGCCCCTCCCTACCCCTTCTTGGGAATaGTGCAGCCATAAATCTGGAGAGGTCATTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: AHYMPLPTPSWE*CSHKSGEVIRI Trigger: AATTCTAATGACCTCTCCAGATTTATGGCTGCAGCATTCCCAAGAAGGGGTAGGGAGGGGCATATAATGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000565755.1 |
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| CDS GCA 72 bp | GATCCAATGGAGGACTTCAAAGTCTTTATTTGTTGCTaGAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: DPMEDFKVFICC*SKVKALYLCST Trigger: TGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS GCA 72 bp | GAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTTaGTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: EDPMEDFKVFIC*CSKVKALYLCS Trigger: GGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CCA 72 bp | AGAACATATTCTTACAGTTCCATGTACCCACGTGGCTaGATTCTGAACAATGACCACTTCCAGACCGGACTT | + |
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Preference number: 6 (lower is better) Translates to: RTYSYSSMYPRG*ILNNDHFQTGL Trigger: AAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAATATGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CAA 72 bp | CCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTaGTTGCTGCAGCAAAGTGAAGGCTCTGTACCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PRRSNGGLQSLY*LLQQSEGSVPL Trigger: CAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CAA 90 bp | CATCTTCCGAGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTaGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTCCACATGTTT | + |
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Preference number: 6 (lower is better) Translates to: HLPRRSNGGLQSLYL*LQQSEGSVPLLHMF Trigger: AAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | AGGACTTCAAAGTCTTTATTTGTTGCTGCAGCAAAGTaGAGGCTCTGTACCTCTGCTCCACATGTTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: RTSKSLFVAAAK*RLCTSAPHVFC Trigger: GCAGAAAACATGTGGAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | ATTCTTACAGTTCCATGTACCCACGTGGCTGGATTCTaGACAATGACCACTTCCAGACCGGACTTACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: ILTVPCTHVAGF*TMTTSRPDLQN Trigger: ATTTTGTAAGTCCGGTCTGGAAGTGGTCATTGTTCAGAATCCAGCCACGTGGGTACATGGAACTGTAAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CAA 72 bp | AGAAGATCCAATGGAGGACTTCAAAGTCTTTATTTGTaGCTGCAGCAAAGTGAAGGCTCTGTACCTCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: RRSNGGLQSLYL*LQQSEGSVPLL Trigger: GAGCAGAGGTACAGAGCCTTCACTTTGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CCA 72 bp | ACTCTCTCATTTCCCTCATCTTCCGAGAAGATCCAATaGAGGACTTCAAAGTCTTTATTTGTTGCTGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: TLSFPSSSEKIQ*RTSKSLFVAAA Trigger: TGCTGCAGCAACAAATAAAGACTTTGAAGTCCTCCATTGGATCTTCTCGGAAGATGAGGGAAATGAGAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS TCA 72 bp | AAATATGGTAAAGGTTTCCACACAGCGTTCTGTTCTTaGAATAATCACTCAAGCCCTGTAAAGACCAATGTG | + |
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Preference number: 6 (lower is better) Translates to: KYGKGFHTAFCS*NNHSSPVKTNV Trigger: CACATTGGTCTTTACAGGGCTTGAGTGATTATTTCAAGAACAGAACGCTGTGTGGAAACCTTTACCATATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000510238.8 ENST00000671536.1 |
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| CDS CCA 72 bp | TTTTCATTTTGCACTGGGCACTACAAGTTATGTAGCTaGTCCTATGTAGATGTAATGATGAAGAGCATACAT | + |
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Preference number: 6 (lower is better) Translates to: FSFCTGHYKLCS*SYVDVMMKSIH Trigger: ATGTATGCTCTTCATCATTACATCTACATAGGACCAGCTACATAACTTGTAGTGCCCAGTGCAAAATGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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| CDS CCA 72 bp | TGTAATGATGAAGAGCATACATTTAGCAAACAGACTTaGGTAAAAATTCCAACTTCACCACTTAACTGGTTA | + |
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Preference number: 6 (lower is better) Translates to: CNDEEHTFSKQT*VKIPTSPLNWL Trigger: TAACCAGTTAAGTGGTGAAGTTGGAATTTTTACCCAAGTCTGTTTGCTAAATGTATGCTCTTCATCATTACA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000563844.1 ENST00000652959.1 |
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