Pregenerated sensors for CARHSP1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000261481Ensembl transcript IDs: ENST00000570290.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCCTGGTCCCGGGATCTAGGCTCGCCTTCAGGGGCTGCTCTCGACTaGCCGTGCCCATGGGCTGGTCGCCTCTCTGTGCCTCAGTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PWSRDLGSPSGAALD*PCPWAGRLSVPQFP Trigger: AGGAAACTGAGGCACAGAGAGGCGACCAGCCCATGGGCACGGCCAGTCGAGAGCAGCCCCTGAAGGCGAGCCTAGATCCCGGGACCAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS GCA 90 bp | CAGCAGCTGCGCGGTTGTTCCCACCAGCCGTCTAGGACGGTTCCTTaGCTGGCTTGGACTAGTTGGTTTCGCTGCTGGGCCTTTTCCCCA | + |
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Preference number: 5 (lower is better) Translates to: QQLRGCSHQPSRTVP*LAWTSWFRCWAFSP Trigger: TGGGGAAAAGGCCCAGCAGCGAAACCAACTAGTCCAAGCCAGGCAAGGAACCGTCCTAGACGGCTGGTGGGAACAACCGCGCAGCTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS CCA 90 bp | AGCTGCGCGGTTGTTCCCACCAGCCGTCTAGGACGGTTCCTTGCCTaGCTTGGACTAGTTGGTTTCGCTGCTGGGCCTTTTCCCCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SCAVVPTSRLGRFLA*LGLVGFAAGPFPQW Trigger: CCACTGGGGAAAAGGCCCAGCAGCGAAACCAACTAGTCCAAGCCAGGCAAGGAACCGTCCTAGACGGCTGGTGGGAACAACCGCGCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS CAA 72 bp | CAGGCACAGTCCTCACCGCCGCCTCCGGGGGCCCTGTaGTCCCGGGCGAGCTCCGGGGACCTCTCTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: QAQSSPPPPGAL*SRASSGDLSPS Trigger: GGAAGGAGAGAGGTCCCCGGAGCTCGCCCGGGACAACAGGGCCCCCGGAGGCGGCGGTGAGGACTGTGCCTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS GCA 72 bp | TTTCCTCTCCTGGCGCGCGTGGCGAGGGGAAGGAACTaGACGGGCGCAGGGACACAGTTCCCCCACTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: FPLLARVARGRN*TGAGTQFPHFA Trigger: TGCAAAGTGGGGGAACTGTGTCCCTGCGCCCGTGCAGTTCCTTCCCCTCGCCACGCGCGCCAGGAGAGGAAA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS GCA 72 bp | CTAGGCTCGCCTTCAGGGGCTGCTCTCGACTGGCCGTaGCCATGGGCTGGTCGCCTCTCTGTGCCTCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: LGSPSGAALDWP*PWAGRLSVPQF Trigger: AAACTGAGGCACAGAGAGGCGACCAGCCCATGGGCACGGCCAGTCGAGAGCAGCCCCTGAAGGCGAGCCTAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS GCA 72 bp | CGCGGTTGTTCCCACCAGCCGTCTAGGACGGTTCCTTaGCTGGCTTGGACTAGTTGGTTTCGCTGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RGCSHQPSRTVP*LAWTSWFRCWA Trigger: GGCCCAGCAGCGAAACCAACTAGTCCAAGCCAGGCAAGGAACCGTCCTAGACGGCTGGTGGGAACAACCGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS CCA 72 bp | TCCCACCAGCCGTCTAGGACGGTTCCTTGCCTGGCTTaGACTAGTTGGTTTCGCTGCTGGGCCTTTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SHQPSRTVPCLA*TSWFRCWAFSP Trigger: TGGGGAAAAGGCCCAGCAGCGAAACCAACTAGTCCAAGCCAGGCAAGGAACCGTCCTAGACGGCTGGTGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS CCA 72 bp | GTTGTTCCCACCAGCCGTCTAGGACGGTTCCTTGCCTaGCTTGGACTAGTTGGTTTCGCTGCTGGGCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: VVPTSRLGRFLA*LGLVGFAAGPF Trigger: AAAAGGCCCAGCAGCGAAACCAACTAGTCCAAGCCAGGCAAGGAACCGTCCTAGACGGCTGGTGGGAACAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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| CDS CAA 72 bp | TATTTCTCTTGGGCGCGCAGACACCTAGGAGTGGAGTaGATGGGTTTTATGGAGACTCCAGGGCTCGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: YFSWARRHLGVE*MGFMETPGLVV Trigger: AACCACGAGCCCTGGAGTCTCCATAAAACCCATCAACTCCACTCCTAGGTGTCTGCGCGCCCAAGAGAAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000570290.1 |
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