Pregenerated sensors for CAPZA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000116489Ensembl transcript IDs: ENST00000466066.1, ENST00000485542.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACACACACAACATTGCAGAATTAGCAATAAGCACAAGAAAGAGGTaGTTTGCCACTGAGGTACAGAAGTTGGGAAAGAGGGGTGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: HTHNIAELAISTRKR*FATEVQKLGKRGAK Trigger: TTTTGCACCCCTCTTTCCCAACTTCTGTACCTCAGTGGCAAATCACCTCTTTCTTGTGCTTATTGCTAATTCTGCAATGTTGTGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466066.1 |
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| CDS TCA 72 bp | AACATTGCAGAATTAGCAATAAGCACAAGAAAGAGGTaGTTTGCCACTGAGGTACAGAAGTTGGGAAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: NIAELAISTRKR*FATEVQKLGKR Trigger: CCTCTTTCCCAACTTCTGTACCTCAGTGGCAAATCACCTCTTTCTTGTGCTTATTGCTAATTCTGCAATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466066.1 |
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| CDS CCA 72 bp | AAGCTCTGTCTACTCAAATGTAAGTCTGGATCTAAGTaGCCTGACCATAAGCCTTTTCTAAGTTATTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: KLCLLKCKSGSK*PDHKPFLSYFV Trigger: GACAAAATAACTTAGAAAAGGCTTATGGTCAGGCCACTTAGATCCAGACTTACATTTGAGTAGACAGAGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466066.1 |
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| CDS TCA 72 bp | GAAAGATTAATTAGCTTCAGAGTGGTAAGGAGTCAATaGCTAGGTAAGCTAATCATGCTTTTATCTTATGGT | + |
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Preference number: 6 (lower is better) Translates to: ERLISFRVVRSQ*LGKLIMLLSYG Trigger: ACCATAAGATAAAAGCATGATTAGCTTACCTAGTCATTGACTCCTTACCACTCTGAAGCTAATTAATCTTTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485542.5 |
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| CDS GCA 72 bp | ACTATAAAGGAAAACCTAACAGCTAACATTAAACTCTaGTTTAATCGGGCAAATGTGGGCAGAAATAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: TIKENLTANIKL*FNRANVGRNKN Trigger: GTTTTTATTTCTGCCCACATTTGCCCGATTAAAGCAGAGTTTAATGTTAGCTGTTAGGTTTTCCTTTATAGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000485542.5 |
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